RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 OTOL1A6NHN0 477 aaPredicted RBP14.89□□□□□ -0.03
LINC00339-211ENST00000641009 ACTN4O43707 911 aaKnown RBP14.89□□□□□ -0.03
LINC00339-211ENST00000641009 KLRC4O43908 158 aa14.89□□□□□ -0.03
LINC00339-211ENST00000641009 BDNFP23560 247 aa14.89□□□□□ -0.03
LINC00339-211ENST00000641009 MAGEA11P43364 429 aa14.89□□□□□ -0.03
LINC00339-211ENST00000641009 CXCL12P48061 93 aa14.89□□□□□ -0.03
LINC00339-211ENST00000641009 CASP4P49662 377 aa14.89□□□□□ -0.03
LINC00339-211ENST00000641009 SNRPFP62306 86 aaKnown RBP14.89□□□□□ -0.03
LINC00339-211ENST00000641009 CYP27A1Q02318 531 aa14.89□□□□□ -0.03
LINC00339-211ENST00000641009 PPP2R5DQ14738 602 aa14.89□□□□□ -0.03
LINC00339-211ENST00000641009 KNOP1Q1ED39 458 aaKnown RBP14.89□□□□□ -0.03
LINC00339-211ENST00000641009 C4orf50Q6ZRC1 276 aa14.89□□□□□ -0.03
LINC00339-211ENST00000641009 ZNF516Q92618 1163 aa14.89□□□□□ -0.03
LINC00339-211ENST00000641009 CHAMP1Q96JM3 812 aa14.89□□□□□ -0.03
LINC00339-211ENST00000641009 SLC22A12Q96S37 553 aa14.89□□□□□ -0.03
LINC00339-211ENST00000641009 CYP2S1Q96SQ9 504 aa14.89□□□□□ -0.03
LINC00339-211ENST00000641009 C2orf42Q9NWW7 574 aa14.89□□□□□ -0.03
LINC00339-211ENST00000641009 NCDNQ9UBB6 729 aa14.89□□□□□ -0.03
LINC00339-211ENST00000641009 MAGEC2Q9UBF1 373 aaPredicted RBP14.89□□□□□ -0.03
LINC00339-211ENST00000641009 SDK1Q7Z5N4 2213 aa14.88□□□□□ -0.03
LINC00339-211ENST00000641009 SLFN14P0C7P3 912 aa14.88□□□□□ -0.03
LINC00339-211ENST00000641009 ARSAP15289 507 aa14.88□□□□□ -0.03
LINC00339-211ENST00000641009 NRLP54845 237 aa14.88□□□□□ -0.03
LINC00339-211ENST00000641009 DMWDQ09019 674 aa14.88□□□□□ -0.03
LINC00339-211ENST00000641009 RUNX3Q13761 415 aa14.88□□□□□ -0.03
LINC00339-211ENST00000641009 CCINQ13939 588 aa14.88□□□□□ -0.03
LINC00339-211ENST00000641009 DGKKQ5KSL6 1271 aa14.88□□□□□ -0.03
LINC00339-211ENST00000641009 C12orf56Q8IXR9 622 aa14.88□□□□□ -0.03
LINC00339-211ENST00000641009 SPEM1Q8N4L4 309 aa14.88□□□□□ -0.03
LINC00339-211ENST00000641009 TTC16Q8NEE8 873 aa14.88□□□□□ -0.03
LINC00339-211ENST00000641009 CHFRQ96EP1 664 aa14.88□□□□□ -0.03
LINC00339-211ENST00000641009 PAGE5Q96GU1 130 aa14.88□□□□□ -0.03
LINC00339-211ENST00000641009 PCED1BQ96HM7 432 aa14.88□□□□□ -0.03
LINC00339-211ENST00000641009 KIF9Q9HAQ2 790 aa14.88□□□□□ -0.03
LINC00339-211ENST00000641009 CGNQ9P2M7 1197 aaKnown RBP14.88□□□□□ -0.03
LINC00339-211ENST00000641009 A0A1B0GVL5 298 aa14.87□□□□□ -0.03
LINC00339-211ENST00000641009 C2orf78A6NCI8 922 aa14.87□□□□□ -0.03
LINC00339-211ENST00000641009 SOBPA7XYQ1 873 aa14.87□□□□□ -0.03
LINC00339-211ENST00000641009 EXOC3O60645 756 aa14.87□□□□□ -0.03
LINC00339-211ENST00000641009 CKMP06732 381 aa14.87□□□□□ -0.03
LINC00339-211ENST00000641009 PFKFB1P16118 471 aa14.87□□□□□ -0.03
LINC00339-211ENST00000641009 HOXC13P31276 330 aa14.87□□□□□ -0.03
LINC00339-211ENST00000641009 GNL1P36915 607 aaPredicted RBP14.87□□□□□ -0.03
LINC00339-211ENST00000641009 GRIK1P39086 918 aa14.87□□□□□ -0.03
LINC00339-211ENST00000641009 MYL6P60660 151 aa14.87□□□□□ -0.03
LINC00339-211ENST00000641009 TNNC1P63316 161 aa14.87□□□□□ -0.03
LINC00339-211ENST00000641009 STK4Q13043 487 aa14.87□□□□□ -0.03
LINC00339-211ENST00000641009 MAPRE1Q15691 268 aaKnown RBP14.87□□□□□ -0.03
LINC00339-211ENST00000641009 WDR72Q3MJ13 1102 aa14.87□□□□□ -0.03
LINC00339-211ENST00000641009 MDH1BQ5I0G3 518 aa14.87□□□□□ -0.03
LINC00339-211ENST00000641009 CC2D1AQ6P1N0 951 aaPredicted RBP14.87□□□□□ -0.03
LINC00339-211ENST00000641009 VSTM1Q6UX27 236 aa14.87□□□□□ -0.03
LINC00339-211ENST00000641009 KIAA0895Q8NCT3 520 aa14.87□□□□□ -0.03
LINC00339-211ENST00000641009 OR6B3Q8NGW1 331 aa14.87□□□□□ -0.03
LINC00339-211ENST00000641009 MYCBPAPQ8TBZ2 947 aa14.87□□□□□ -0.03
LINC00339-211ENST00000641009 PLEKHO2Q8TD55 490 aa14.87□□□□□ -0.03
LINC00339-211ENST00000641009 RMDN1Q96DB5 314 aa14.87□□□□□ -0.03
LINC00339-211ENST00000641009 SNX25Q9H3E2 840 aa14.87□□□□□ -0.03
LINC00339-211ENST00000641009 DPEP3Q9H4B8 488 aa14.87□□□□□ -0.03
LINC00339-211ENST00000641009 TRAV19A0A0A6YYK7 116 aa14.86□□□□□ -0.03
LINC00339-211ENST00000641009 K7ESF4 209 aa14.86□□□□□ -0.03
LINC00339-211ENST00000641009 TACC1O75410 805 aa14.86□□□□□ -0.03
LINC00339-211ENST00000641009 USP46P62068 366 aa14.86□□□□□ -0.03
LINC00339-211ENST00000641009 FAM160A1Q05DH4 1040 aa14.86□□□□□ -0.03
LINC00339-211ENST00000641009 TRPC3Q13507 836 aa14.86□□□□□ -0.03
LINC00339-211ENST00000641009 ZNF268Q14587 947 aaPredicted RBP14.86□□□□□ -0.03
LINC00339-211ENST00000641009 MTF1Q14872 753 aa14.86□□□□□ -0.03
LINC00339-211ENST00000641009 LPAL2Q16609 132 aa14.86□□□□□ -0.03
LINC00339-211ENST00000641009 KMT5BQ4FZB7 885 aa14.86□□□□□ -0.03
LINC00339-211ENST00000641009 ARL14EPQ8N8R7 260 aaPredicted RBP14.86□□□□□ -0.03
LINC00339-211ENST00000641009 FSIP1Q8NA03 581 aa14.86□□□□□ -0.03
LINC00339-211ENST00000641009 SPATA17Q96L03 361 aa14.86□□□□□ -0.03
LINC00339-211ENST00000641009 XYLT2Q9H1B5 865 aa14.86□□□□□ -0.03
LINC00339-211ENST00000641009 EXOC1Q9NV70 894 aa14.86□□□□□ -0.03
LINC00339-211ENST00000641009 NXF1Q9UBU9 619 aaKnown RBP14.86□□□□□ -0.03
LINC00339-211ENST00000641009 ZDHHC9Q9Y397 364 aa14.86□□□□□ -0.03
LINC00339-211ENST00000641009 CHURC1-FNTBB4DL54 471 aa14.85□□□□□ -0.03
LINC00339-211ENST00000641009 PHACTR2O75167 634 aa14.85□□□□□ -0.03
LINC00339-211ENST00000641009 USP17L7P0C7H9 530 aa14.85□□□□□ -0.03
LINC00339-211ENST00000641009 CMA1P23946 247 aa14.85□□□□□ -0.03
LINC00339-211ENST00000641009 FNTBP49356 437 aa14.85□□□□□ -0.03
LINC00339-211ENST00000641009 CACNA2D1P54289 1103 aa14.85□□□□□ -0.03
LINC00339-211ENST00000641009 ZNF77Q15935 545 aa14.85□□□□□ -0.03
LINC00339-211ENST00000641009 TDRD10Q5VZ19 366 aaKnown RBP14.85□□□□□ -0.03
LINC00339-211ENST00000641009 NAIF1Q69YI7 327 aaPredicted RBP14.85□□□□□ -0.03
LINC00339-211ENST00000641009 HEATR6Q6AI08 1181 aaKnown RBP14.85□□□□□ -0.03
LINC00339-211ENST00000641009 FSTL4Q6MZW2 842 aa14.85□□□□□ -0.03
LINC00339-211ENST00000641009 PKN3Q6P5Z2 889 aa14.85□□□□□ -0.03
LINC00339-211ENST00000641009 DENND5BQ6ZUT9 1274 aa14.85□□□□□ -0.03
LINC00339-211ENST00000641009 GOLGA5Q8TBA6 731 aa14.85□□□□□ -0.03
LINC00339-211ENST00000641009 ELMO3Q96BJ8 720 aa14.85□□□□□ -0.03
LINC00339-211ENST00000641009 SPATA32Q96LK8 384 aa14.85□□□□□ -0.03
LINC00339-211ENST00000641009 TMEM30AQ9NV96 361 aa14.85□□□□□ -0.03
LINC00339-211ENST00000641009 GCNT4Q9P109 453 aa14.85□□□□□ -0.03
LINC00339-211ENST00000641009 LRRIQ3A6PVS8 624 aaPredicted RBP14.84□□□□□ -0.03
LINC00339-211ENST00000641009 A8MXQ7 604 aa14.84□□□□□ -0.03
LINC00339-211ENST00000641009 F8VP50 259 aa14.84□□□□□ -0.03
LINC00339-211ENST00000641009 TRIM66O15016 1216 aa14.84□□□□□ -0.03
LINC00339-211ENST00000641009 PAPSS2O95340 614 aaPredicted RBP14.84□□□□□ -0.03
LINC00339-211ENST00000641009 STAU1O95793 577 aaKnown RBP14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms