RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 PPP1R7Q15435 360 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 TTC27Q6P3X3 843 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 NOTUMQ6P988 496 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 ZDHHC14Q8IZN3 488 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 NME8Q8N427 588 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 UBLCP1Q8WVY7 318 aaPredicted RBP19.36■□□□□ 0.69
CLN3-263ENST00000637871 BADQ92934 168 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 ART4Q93070 314 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 FOXP3Q9BZS1 431 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 DCLK3Q9C098 648 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 SNX24Q9Y343 169 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 NFS1Q9Y697 457 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 TET1Q8NFU7 2136 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 NBNO60934 754 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 TJP3O95049 919 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 CSF2RAP15509 400 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 GABRB2P47870 512 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 PLTPP55058 493 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 KLF1Q13351 362 aaPredicted RBP19.36■□□□□ 0.69
CLN3-263ENST00000637871 PTK6Q13882 451 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 HADHQ16836 314 aaKnown RBP19.36■□□□□ 0.69
CLN3-263ENST00000637871 ODF2Q5BJF6 829 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 CEP85LQ5SZL2 805 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 KDM7AQ6ZMT4 941 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 DEFB128Q7Z7B8 93 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 HOOK3Q86VS8 718 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 TMEM192Q8IY95 271 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 WDTC1Q8N5D0 677 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 TFAP2BQ92481 460 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 CPB2Q96IY4 423 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 PABPC3Q9H361 631 aaKnown RBP19.36■□□□□ 0.69
CLN3-263ENST00000637871 GRHL1Q9NZI5 618 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 CALCOCO1Q9P1Z2 691 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 POLIQ9UNA4 740 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 AGAP1Q9UPQ3 857 aa19.36■□□□□ 0.69
CLN3-263ENST00000637871 SRRM3A6NNA2 597 aaPredicted RBP19.35■□□□□ 0.69
CLN3-263ENST00000637871 M0QZ92 97 aa19.35■□□□□ 0.69
CLN3-263ENST00000637871 XPOTO43592 962 aaKnown RBP19.35■□□□□ 0.69
CLN3-263ENST00000637871 KRT7P08729 469 aa19.35■□□□□ 0.69
CLN3-263ENST00000637871 RARGP13631 454 aa19.35■□□□□ 0.69
CLN3-263ENST00000637871 ATF7P17544 494 aaPredicted RBP19.35■□□□□ 0.69
CLN3-263ENST00000637871 PMS2P54278 862 aa19.35■□□□□ 0.69
CLN3-263ENST00000637871 UAP1Q16222 522 aaPredicted RBP19.35■□□□□ 0.69
CLN3-263ENST00000637871 ZNF394Q53GI3 561 aa19.35■□□□□ 0.69
CLN3-263ENST00000637871 TTMPQ5BVD1 217 aa19.35■□□□□ 0.69
CLN3-263ENST00000637871 FAM26DQ5JW98 314 aa19.35■□□□□ 0.69
CLN3-263ENST00000637871 SCARA5Q6ZMJ2 495 aa19.35■□□□□ 0.69
CLN3-263ENST00000637871 CDR2LQ86X02 465 aaPredicted RBP19.35■□□□□ 0.69
CLN3-263ENST00000637871 CCDC50Q8IVM0 306 aa19.35■□□□□ 0.69
CLN3-263ENST00000637871 LRRC52Q8N7C0 313 aa19.35■□□□□ 0.69
CLN3-263ENST00000637871 CCDC89Q8N998 374 aa19.35■□□□□ 0.69
CLN3-263ENST00000637871 SLC4A11Q8NBS3 891 aa19.35■□□□□ 0.69
CLN3-263ENST00000637871 ARL8AQ96BM9 186 aa19.35■□□□□ 0.69
CLN3-263ENST00000637871 NCAPGQ9BPX3 1015 aa19.35■□□□□ 0.69
CLN3-263ENST00000637871 TRIM31Q9BZY9 425 aa19.35■□□□□ 0.69
CLN3-263ENST00000637871 TRIM7Q9C029 511 aa19.35■□□□□ 0.69
CLN3-263ENST00000637871 ANK1P16157 1881 aa19.35■□□□□ 0.69
CLN3-263ENST00000637871 CAND2O75155 1236 aa19.34■□□□□ 0.69
CLN3-263ENST00000637871 KRT14P02533 472 aa19.34■□□□□ 0.69
CLN3-263ENST00000637871 KRT3P12035 628 aa19.34■□□□□ 0.69
CLN3-263ENST00000637871 RPL21P46778 160 aaKnown RBP19.34■□□□□ 0.69
CLN3-263ENST00000637871 NFX1Q12986 1120 aaKnown RBP19.34■□□□□ 0.69
CLN3-263ENST00000637871 LPIN1Q14693 890 aa19.34■□□□□ 0.69
CLN3-263ENST00000637871 TCTN1Q2MV58 587 aa19.34■□□□□ 0.69
CLN3-263ENST00000637871 ZDHHC24Q6UX98 284 aa19.34■□□□□ 0.69
CLN3-263ENST00000637871 TRMT10CQ7L0Y3 403 aaKnown RBP19.34■□□□□ 0.69
CLN3-263ENST00000637871 CATSPER4Q7RTX7 472 aa19.34■□□□□ 0.69
CLN3-263ENST00000637871 BEST2Q8NFU1 509 aa19.34■□□□□ 0.69
CLN3-263ENST00000637871 VWCEQ96DN2 955 aa19.34■□□□□ 0.69
CLN3-263ENST00000637871 TMEM109Q9BVC6 243 aa19.34■□□□□ 0.69
CLN3-263ENST00000637871 CAPS2Q9BXY5 557 aa19.34■□□□□ 0.69
CLN3-263ENST00000637871 AGO3Q9H9G7 860 aaKnown RBP19.34■□□□□ 0.69
CLN3-263ENST00000637871 GTF3C5Q9Y5Q8 519 aaPredicted RBP19.34■□□□□ 0.69
CLN3-263ENST00000637871 TCRBV7S2A1N4TA0A589 114 aa19.33■□□□□ 0.69
CLN3-263ENST00000637871 FAM170AA1A519 330 aa19.33■□□□□ 0.69
CLN3-263ENST00000637871 SETSIPP0DME0 302 aa19.33■□□□□ 0.69
CLN3-263ENST00000637871 RALAP11233 206 aa19.33■□□□□ 0.69
CLN3-263ENST00000637871 DARSP14868 501 aaKnown RBP19.33■□□□□ 0.69
CLN3-263ENST00000637871 CD52P31358 61 aa19.33■□□□□ 0.69
CLN3-263ENST00000637871 CDR1P51861 262 aa19.33■□□□□ 0.69
CLN3-263ENST00000637871 TAS2R40P59535 323 aa19.33■□□□□ 0.69
CLN3-263ENST00000637871 FBXO47Q5MNV8 452 aa19.33■□□□□ 0.69
CLN3-263ENST00000637871 MFSD5Q6N075 450 aa19.33■□□□□ 0.69
CLN3-263ENST00000637871 CPNE8Q86YQ8 564 aa19.33■□□□□ 0.69
CLN3-263ENST00000637871 FBXO25Q8TCJ0 367 aa19.33■□□□□ 0.69
CLN3-263ENST00000637871 IPO4Q8TEX9 1081 aaKnown RBP19.33■□□□□ 0.69
CLN3-263ENST00000637871 KIF12Q96FN5 646 aa19.33■□□□□ 0.69
CLN3-263ENST00000637871 SNF8Q96H20 258 aa19.33■□□□□ 0.69
CLN3-263ENST00000637871 MCEEQ96PE7 176 aa19.33■□□□□ 0.69
CLN3-263ENST00000637871 NT5C1AQ9BXI3 368 aa19.33■□□□□ 0.69
CLN3-263ENST00000637871 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.33■□□□□ 0.69
CLN3-263ENST00000637871 DRG1Q9Y295 367 aaKnown RBP19.33■□□□□ 0.69
CLN3-263ENST00000637871 ACRP10323 421 aa19.33■□□□□ 0.68
CLN3-263ENST00000637871 SSR1P43307 286 aaKnown RBP19.33■□□□□ 0.68
CLN3-263ENST00000637871 CRYBB1P53674 252 aaPredicted RBP19.33■□□□□ 0.68
CLN3-263ENST00000637871 DENND2CQ68D51 928 aa19.33■□□□□ 0.68
CLN3-263ENST00000637871 DENND1BQ6P3S1 775 aa19.33■□□□□ 0.68
CLN3-263ENST00000637871 LCLAT1Q6UWP7 414 aa19.33■□□□□ 0.68
CLN3-263ENST00000637871 FAM228AQ86W67 206 aa19.33■□□□□ 0.68
CLN3-263ENST00000637871 UNC93AQ86WB7 457 aa19.33■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms