RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 CAVIN2O95810 425 aa19.42■□□□□ 0.7
CLN3-259ENST00000637551 HMGA1P17096 107 aaKnown RBP19.42■□□□□ 0.7
CLN3-259ENST00000637551 PDE6CP51160 858 aa19.42■□□□□ 0.7
CLN3-259ENST00000637551 CYP27A1Q02318 531 aa19.42■□□□□ 0.7
CLN3-259ENST00000637551 HTR4Q13639 388 aa19.42■□□□□ 0.7
CLN3-259ENST00000637551 ARHGAP15Q53QZ3 475 aa19.42■□□□□ 0.7
CLN3-259ENST00000637551 EHBP1Q8NDI1 1231 aa19.42■□□□□ 0.7
CLN3-259ENST00000637551 FEZF2Q8TBJ5 459 aa19.42■□□□□ 0.7
CLN3-259ENST00000637551 OVCA2Q8WZ82 227 aa19.42■□□□□ 0.7
CLN3-259ENST00000637551 KCNK12Q9HB15 430 aa19.42■□□□□ 0.7
CLN3-259ENST00000637551 DMAP1Q9NPF5 467 aaPredicted RBP19.42■□□□□ 0.7
CLN3-259ENST00000637551 OBP2AQ9NY56 170 aa19.42■□□□□ 0.7
CLN3-259ENST00000637551 DAAM1Q9Y4D1 1078 aa19.42■□□□□ 0.7
CLN3-259ENST00000637551 ZDBF2Q9HCK1 2354 aa19.41■□□□□ 0.7
CLN3-259ENST00000637551 RTN3O95197 1032 aaPredicted RBP19.41■□□□□ 0.7
CLN3-259ENST00000637551 RFX1P22670 979 aa19.41■□□□□ 0.7
CLN3-259ENST00000637551 RAP1GAPP47736 663 aa19.41■□□□□ 0.7
CLN3-259ENST00000637551 NTHL1P78549 312 aa19.41■□□□□ 0.7
CLN3-259ENST00000637551 MYL5Q02045 173 aa19.41■□□□□ 0.7
CLN3-259ENST00000637551 TDGQ13569 410 aa19.41■□□□□ 0.7
CLN3-259ENST00000637551 CDKAL1Q5VV42 579 aa19.41■□□□□ 0.7
CLN3-259ENST00000637551 DENND5BQ6ZUT9 1274 aa19.41■□□□□ 0.7
CLN3-259ENST00000637551 FAM35AQ86V20 835 aa19.41■□□□□ 0.7
CLN3-259ENST00000637551 FUKQ8N0W3 1084 aa19.41■□□□□ 0.7
CLN3-259ENST00000637551 UBR7Q8N806 425 aa19.41■□□□□ 0.7
CLN3-259ENST00000637551 PRSS33Q8NF86 280 aa19.41■□□□□ 0.7
CLN3-259ENST00000637551 ITFG1Q8TB96 612 aa19.41■□□□□ 0.7
CLN3-259ENST00000637551 FAM200AQ8TCP9 573 aa19.41■□□□□ 0.7
CLN3-259ENST00000637551 WHAMMQ8TF30 809 aa19.41■□□□□ 0.7
CLN3-259ENST00000637551 EDAQ92838 391 aa19.41■□□□□ 0.7
CLN3-259ENST00000637551 DPEP3Q9H4B8 488 aa19.41■□□□□ 0.7
CLN3-259ENST00000637551 IL21Q9HBE4 155 aa19.41■□□□□ 0.7
CLN3-259ENST00000637551 NFE2L3Q9Y4A8 694 aa19.41■□□□□ 0.7
CLN3-259ENST00000637551 TECTAO75443 2155 aa19.4■□□□□ 0.7
CLN3-259ENST00000637551 HCRTO43612 131 aa19.4■□□□□ 0.7
CLN3-259ENST00000637551 MOSPD3O75425 235 aa19.4■□□□□ 0.7
CLN3-259ENST00000637551 PAEPP09466 180 aa19.4■□□□□ 0.7
CLN3-259ENST00000637551 BDNFP23560 247 aa19.4■□□□□ 0.7
CLN3-259ENST00000637551 GRIK1P39086 918 aa19.4■□□□□ 0.7
CLN3-259ENST00000637551 CCR2P41597 374 aa19.4■□□□□ 0.7
CLN3-259ENST00000637551 MTIF2P46199 727 aaKnown RBP19.4■□□□□ 0.7
CLN3-259ENST00000637551 STILQ15468 1287 aa19.4■□□□□ 0.7
CLN3-259ENST00000637551 MEA1Q16626 185 aa19.4■□□□□ 0.7
CLN3-259ENST00000637551 TCP11X2Q5H9J9 407 aa19.4■□□□□ 0.7
CLN3-259ENST00000637551 ARHGAP17Q68EM7 881 aa19.4■□□□□ 0.7
CLN3-259ENST00000637551 GBP6Q6ZN66 633 aa19.4■□□□□ 0.7
CLN3-259ENST00000637551 GAREM2Q75VX8 874 aa19.4■□□□□ 0.7
CLN3-259ENST00000637551 ACOT1Q86TX2 421 aa19.4■□□□□ 0.7
CLN3-259ENST00000637551 KIAA1958Q8N8K9 716 aa19.4■□□□□ 0.7
CLN3-259ENST00000637551 SHKBP1Q8TBC3 707 aa19.4■□□□□ 0.7
CLN3-259ENST00000637551 SMARCD2Q92925 531 aa19.4■□□□□ 0.7
CLN3-259ENST00000637551 ELSPBP1Q96BH3 223 aa19.4■□□□□ 0.7
CLN3-259ENST00000637551 LPIN3Q9BQK8 851 aa19.4■□□□□ 0.7
CLN3-259ENST00000637551 B3GNT5Q9BYG0 378 aa19.4■□□□□ 0.7
CLN3-259ENST00000637551 IL37Q9NZH6 218 aa19.4■□□□□ 0.7
CLN3-259ENST00000637551 GCNT4Q9P109 453 aa19.4■□□□□ 0.7
CLN3-259ENST00000637551 LIMD1Q9UGP4 676 aa19.4■□□□□ 0.7
CLN3-259ENST00000637551 DUSP12Q9UNI6 340 aa19.4■□□□□ 0.7
CLN3-259ENST00000637551 CNTN6Q9UQ52 1028 aa19.4■□□□□ 0.7
CLN3-259ENST00000637551 ANAPC1Q9H1A4 1944 aa19.4■□□□□ 0.7
CLN3-259ENST00000637551 FAM92AA1XBS5 289 aa19.39■□□□□ 0.69
CLN3-259ENST00000637551 SLC38A8A6NNN8 435 aa19.39■□□□□ 0.69
CLN3-259ENST00000637551 KCNJ18B7U540 433 aa19.39■□□□□ 0.69
CLN3-259ENST00000637551 TPM2P07951 284 aa19.39■□□□□ 0.69
CLN3-259ENST00000637551 MYL4P12829 197 aa19.39■□□□□ 0.69
CLN3-259ENST00000637551 CEBPBP17676 345 aa19.39■□□□□ 0.69
CLN3-259ENST00000637551 GABRR2P28476 465 aa19.39■□□□□ 0.69
CLN3-259ENST00000637551 ZXDAP98168 799 aa19.39■□□□□ 0.69
CLN3-259ENST00000637551 TYRO3Q06418 890 aa19.39■□□□□ 0.69
CLN3-259ENST00000637551 SIGLEC14Q08ET2 396 aa19.39■□□□□ 0.69
CLN3-259ENST00000637551 KCNJ12Q14500 433 aa19.39■□□□□ 0.69
CLN3-259ENST00000637551 EXOC3L4Q17RC7 722 aa19.39■□□□□ 0.69
CLN3-259ENST00000637551 CAVIN1Q6NZI2 390 aaKnown RBP19.39■□□□□ 0.69
CLN3-259ENST00000637551 TRIM65Q6PJ69 517 aa19.39■□□□□ 0.69
CLN3-259ENST00000637551 PDZD8Q8NEN9 1154 aa19.39■□□□□ 0.69
CLN3-259ENST00000637551 ANKRD20A12PQ8NF67 263 aa19.39■□□□□ 0.69
CLN3-259ENST00000637551 DEPDC1BQ8WUY9 529 aa19.39■□□□□ 0.69
CLN3-259ENST00000637551 TMEM176AQ96HP8 235 aa19.39■□□□□ 0.69
CLN3-259ENST00000637551 ASB16Q96NS5 453 aa19.39■□□□□ 0.69
CLN3-259ENST00000637551 TUBGCP2Q9BSJ2 902 aa19.39■□□□□ 0.69
CLN3-259ENST00000637551 UBXN6Q9BZV1 441 aa19.39■□□□□ 0.69
CLN3-259ENST00000637551 ZNF518BQ9C0D4 1074 aa19.39■□□□□ 0.69
CLN3-259ENST00000637551 NDST4Q9H3R1 872 aa19.39■□□□□ 0.69
CLN3-259ENST00000637551 TASP1Q9H6P5 420 aa19.39■□□□□ 0.69
CLN3-259ENST00000637551 SLC2A4RGQ9NR83 387 aa19.39■□□□□ 0.69
CLN3-259ENST00000637551 HMGXB4Q9UGU5 601 aa19.39■□□□□ 0.69
CLN3-259ENST00000637551 MUTYHQ9UIF7 546 aa19.39■□□□□ 0.69
CLN3-259ENST00000637551 F8VP50 259 aa19.38■□□□□ 0.69
CLN3-259ENST00000637551 SOAT2O75908 522 aa19.38■□□□□ 0.69
CLN3-259ENST00000637551 F11P03951 625 aa19.38■□□□□ 0.69
CLN3-259ENST00000637551 FAM200BP0CF97 657 aa19.38■□□□□ 0.69
CLN3-259ENST00000637551 RAD23BP54727 409 aa19.38■□□□□ 0.69
CLN3-259ENST00000637551 PTPN5P54829 565 aa19.38■□□□□ 0.69
CLN3-259ENST00000637551 FOXK2Q01167 660 aa19.38■□□□□ 0.69
CLN3-259ENST00000637551 DDR2Q16832 855 aa19.38■□□□□ 0.69
CLN3-259ENST00000637551 VWA3BQ502W6 1294 aa19.38■□□□□ 0.69
CLN3-259ENST00000637551 PAQR9Q6ZVX9 377 aa19.38■□□□□ 0.69
CLN3-259ENST00000637551 HS6ST3Q8IZP7 471 aa19.38■□□□□ 0.69
CLN3-259ENST00000637551 PPM1KQ8N3J5 372 aa19.38■□□□□ 0.69
CLN3-259ENST00000637551 SLC4A11Q8NBS3 891 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms