RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 IGHA2P01877 340 aa12.12□□□□□ -0.47
CLN6-217ENST00000636964 MMP8P22894 467 aa12.12□□□□□ -0.47
CLN6-217ENST00000636964 CTNNA1P35221 906 aaKnown RBP12.12□□□□□ -0.47
CLN6-217ENST00000636964 RBP5P82980 135 aa12.12□□□□□ -0.47
CLN6-217ENST00000636964 HLTFQ14527 1009 aaKnown RBP eCLIP12.12□□□□□ -0.47
CLN6-217ENST00000636964 SEL1L2Q5TEA6 688 aa12.12□□□□□ -0.47
CLN6-217ENST00000636964 TMEM110Q86TL2 294 aa12.12□□□□□ -0.47
CLN6-217ENST00000636964 ERICH1Q86X53 443 aa12.12□□□□□ -0.47
CLN6-217ENST00000636964 RBM12BQ8IXT5 1001 aaKnown RBP12.12□□□□□ -0.47
CLN6-217ENST00000636964 SLC4A11Q8NBS3 891 aa12.12□□□□□ -0.47
CLN6-217ENST00000636964 TMEM35BQ8NCS4 154 aa12.12□□□□□ -0.47
CLN6-217ENST00000636964 HEXIM2Q96MH2 286 aaKnown RBP12.12□□□□□ -0.47
CLN6-217ENST00000636964 ZNF570Q96NI8 536 aa12.12□□□□□ -0.47
CLN6-217ENST00000636964 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.12□□□□□ -0.476e-12■■■■■ 40.9
CLN6-217ENST00000636964 PARP2Q9UGN5 583 aa12.12□□□□□ -0.47
CLN6-217ENST00000636964 CYTH4Q9UIA0 394 aa12.12□□□□□ -0.47
CLN6-217ENST00000636964 TMEM88BA6NKF7 163 aa12.12□□□□□ -0.47
CLN6-217ENST00000636964 GOLGA8SH3BPF8 625 aa12.12□□□□□ -0.47
CLN6-217ENST00000636964 CCDC188H7C350 402 aa12.12□□□□□ -0.47
CLN6-217ENST00000636964 PIK3R2O00459 728 aa12.12□□□□□ -0.47
CLN6-217ENST00000636964 DUSP11O75319 330 aaKnown RBP12.12□□□□□ -0.47
CLN6-217ENST00000636964 CTSHP09668 335 aa12.12□□□□□ -0.47
CLN6-217ENST00000636964 ELNP15502 786 aa12.12□□□□□ -0.47
CLN6-217ENST00000636964 DCAF4L1Q3SXM0 396 aa12.12□□□□□ -0.47
CLN6-217ENST00000636964 BZW1Q7L1Q6 419 aaKnown RBP12.12□□□□□ -0.47
CLN6-217ENST00000636964 DPH5Q9H2P9 285 aa12.12□□□□□ -0.47
CLN6-217ENST00000636964 RABL2AQ9UBK7 228 aaPredicted RBP12.12□□□□□ -0.47
CLN6-217ENST00000636964 TTC7AQ9ULT0 858 aaPredicted RBP12.12□□□□□ -0.47
CLN6-217ENST00000636964 C2CD2Q9Y426 696 aa12.12□□□□□ -0.47
CLN6-217ENST00000636964 LAMA2P24043 3122 aaKnown RBP12.12□□□□□ -0.47
CLN6-217ENST00000636964 SRRM3A6NNA2 597 aaPredicted RBP12.11□□□□□ -0.47
CLN6-217ENST00000636964 STK10O94804 968 aaKnown RBP12.11□□□□□ -0.47
CLN6-217ENST00000636964 YARSP54577 528 aaKnown RBP12.11□□□□□ -0.47
CLN6-217ENST00000636964 TAS2R40P59535 323 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 YWHAEP62258 255 aaKnown RBP12.11□□□□□ -0.47
CLN6-217ENST00000636964 C1QBPQ07021 282 aaKnown RBP12.11□□□□□ -0.47
CLN6-217ENST00000636964 KYAT1Q16773 422 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 PLEKHA7Q6IQ23 1121 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 UBA3Q8TBC4 463 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 RAPGEF5Q92565 580 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 C18orf8Q96DM3 657 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 SPDL1Q96EA4 605 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 MCEEQ96PE7 176 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 KATNAL1Q9BW62 490 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 Q9Y3F1 56 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 SNX9Q9Y5X1 595 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 GOLGA6L7A0A1B0GV03 622 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 CILPO75339 1184 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 CYBAP13498 195 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 TCF4P15884 667 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 NDST1P52848 882 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 SLC8A3P57103 927 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 CDC42EP1Q00587 391 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 MYO1EQ12965 1108 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 ATP13A4Q4VNC1 1196 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 MFSD14CQ5VZR4 134 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 C12orf29Q8N999 325 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 FEZF2Q8TBJ5 459 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 TMEM176AQ96HP8 235 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 GOLGA2P5Q9HBQ8 144 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 MRPL47Q9HD33 250 aaKnown RBP12.11□□□□□ -0.47
CLN6-217ENST00000636964 PARVAQ9NVD7 372 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 KLHL11Q9NVR0 708 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 ITGA11Q9UKX5 1188 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 HMGB1P1B2RPK0 211 aaPredicted RBP12.11□□□□□ -0.47
CLN6-217ENST00000636964 ZSCAN9O15535 394 aaPredicted RBP12.11□□□□□ -0.47
CLN6-217ENST00000636964 DAPK3O43293 454 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 DNAJC8O75937 253 aaPredicted RBP12.11□□□□□ -0.47
CLN6-217ENST00000636964 PTPN11Q06124 597 aaPredicted RBP12.11□□□□□ -0.47
CLN6-217ENST00000636964 CACNB2Q08289 660 aaPredicted RBP12.11□□□□□ -0.47
CLN6-217ENST00000636964 IRF5Q13568 498 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 DCUN1D2Q6PH85 259 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 PRELID2Q8N945 189 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 WNT8BQ93098 351 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 SNX27Q96L92 541 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 NAP1L3Q99457 506 aaPredicted RBP12.11□□□□□ -0.47
CLN6-217ENST00000636964 HEMGNQ9BXL5 484 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 NEUROG2Q9H2A3 272 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 SCN1AP35498 2009 aa12.11□□□□□ -0.47
CLN6-217ENST00000636964 GOLGA6L10A0A0M3HER8 536 aa12.1□□□□□ -0.47
CLN6-217ENST00000636964 PROSCO94903 275 aa12.1□□□□□ -0.47
CLN6-217ENST00000636964 FAM200BP0CF97 657 aa12.1□□□□□ -0.47
CLN6-217ENST00000636964 CTNNA2P26232 953 aa12.1□□□□□ -0.47
CLN6-217ENST00000636964 CCND3P30281 292 aaPredicted RBP12.1□□□□□ -0.47
CLN6-217ENST00000636964 ATICP31939 592 aa12.1□□□□□ -0.47
CLN6-217ENST00000636964 GBP2P32456 591 aaPredicted RBP12.1□□□□□ -0.47
CLN6-217ENST00000636964 KCNJ1P48048 391 aa12.1□□□□□ -0.47
CLN6-217ENST00000636964 NFX1Q12986 1120 aaKnown RBP12.1□□□□□ -0.47
CLN6-217ENST00000636964 PTPN20Q4JDL3 420 aa12.1□□□□□ -0.47
CLN6-217ENST00000636964 DNAJC24Q6P3W2 148 aa12.1□□□□□ -0.47
CLN6-217ENST00000636964 MAGOHBQ96A72 148 aaKnown RBP12.1□□□□□ -0.47
CLN6-217ENST00000636964 VCPIP1Q96JH7 1222 aa12.1□□□□□ -0.47
CLN6-217ENST00000636964 LPIN3Q9BQK8 851 aa12.1□□□□□ -0.47
CLN6-217ENST00000636964 F8VP50 259 aa12.1□□□□□ -0.47
CLN6-217ENST00000636964 HCRTO43612 131 aa12.1□□□□□ -0.47
CLN6-217ENST00000636964 P4HA1P13674 534 aa12.1□□□□□ -0.47
CLN6-217ENST00000636964 HSD17B3P37058 310 aa12.1□□□□□ -0.47
CLN6-217ENST00000636964 ZNF844Q08AG5 666 aa12.1□□□□□ -0.47
CLN6-217ENST00000636964 SF3A3Q12874 501 aaKnown RBP eCLIP12.1□□□□□ -0.47
CLN6-217ENST00000636964 TWF2Q6IBS0 349 aaKnown RBP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms