RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 EBF3Q9H4W6 596 aa19.71■□□□□ 0.75
CLN3-241ENST00000635861 PTPRJQ12913 1337 aa19.71■□□□□ 0.75
CLN3-241ENST00000635861 HRO43593 1189 aa19.7■□□□□ 0.74
CLN3-241ENST00000635861 CKMP06732 381 aa19.7■□□□□ 0.74
CLN3-241ENST00000635861 HOXD13P35453 343 aa19.7■□□□□ 0.74
CLN3-241ENST00000635861 PPP3CCP48454 512 aa19.7■□□□□ 0.74
CLN3-241ENST00000635861 EHHADHQ08426 723 aa19.7■□□□□ 0.74
CLN3-241ENST00000635861 USP4Q13107 963 aa19.7■□□□□ 0.74
CLN3-241ENST00000635861 ZNF77Q15935 545 aa19.7■□□□□ 0.74
CLN3-241ENST00000635861 SDHAF4Q5VUM1 108 aa19.7■□□□□ 0.74
CLN3-241ENST00000635861 LMBRD2Q68DH5 695 aaPredicted RBP19.7■□□□□ 0.74
CLN3-241ENST00000635861 ATL3Q6DD88 541 aa19.7■□□□□ 0.74
CLN3-241ENST00000635861 UNC13DQ70J99 1090 aa19.7■□□□□ 0.74
CLN3-241ENST00000635861 HS2ST1Q7LGA3 356 aa19.7■□□□□ 0.74
CLN3-241ENST00000635861 TRAPPC11Q7Z392 1133 aa19.7■□□□□ 0.74
CLN3-241ENST00000635861 ARHGAP30Q7Z6I6 1101 aaPredicted RBP19.7■□□□□ 0.74
CLN3-241ENST00000635861 SCN4BQ8IWT1 228 aa19.7■□□□□ 0.74
CLN3-241ENST00000635861 GLIS3Q8NEA6 775 aa19.7■□□□□ 0.74
CLN3-241ENST00000635861 OSCP1Q8WVF1 389 aa19.7■□□□□ 0.74
CLN3-241ENST00000635861 ATP2A3Q93084 1043 aa19.7■□□□□ 0.74
CLN3-241ENST00000635861 FNBP1Q96RU3 617 aa19.7■□□□□ 0.74
CLN3-241ENST00000635861 PARD6AQ9NPB6 346 aa19.7■□□□□ 0.74
CLN3-241ENST00000635861 AGPAT3Q9NRZ7 376 aa19.7■□□□□ 0.74
CLN3-241ENST00000635861 FOXD4L1Q9NU39 408 aa19.7■□□□□ 0.74
CLN3-241ENST00000635861 SPTBN2O15020 2390 aa19.7■□□□□ 0.74
CLN3-241ENST00000635861 TRIM66O15016 1216 aa19.69■□□□□ 0.74
CLN3-241ENST00000635861 TACC1O75410 805 aa19.69■□□□□ 0.74
CLN3-241ENST00000635861 STAU1O95793 577 aaKnown RBP19.69■□□□□ 0.74
CLN3-241ENST00000635861 PSMD6Q15008 389 aa19.69■□□□□ 0.74
CLN3-241ENST00000635861 SCARA3Q6AZY7 606 aa19.69■□□□□ 0.74
CLN3-241ENST00000635861 TRIM68Q6AZZ1 485 aa19.69■□□□□ 0.74
CLN3-241ENST00000635861 FSTL4Q6MZW2 842 aa19.69■□□□□ 0.74
CLN3-241ENST00000635861 SHC4Q6S5L8 630 aa19.69■□□□□ 0.74
CLN3-241ENST00000635861 C12orf56Q8IXR9 622 aa19.69■□□□□ 0.74
CLN3-241ENST00000635861 CAMKK1Q8N5S9 505 aa19.69■□□□□ 0.74
CLN3-241ENST00000635861 XXYLT1Q8NBI6 393 aa19.69■□□□□ 0.74
CLN3-241ENST00000635861 CCDC26Q8TAB7 109 aa19.69■□□□□ 0.74
CLN3-241ENST00000635861 MYLPFQ96A32 169 aa19.69■□□□□ 0.74
CLN3-241ENST00000635861 CGRRF1Q99675 332 aa19.69■□□□□ 0.74
CLN3-241ENST00000635861 PVALEFA0A1B0GWK0 134 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 MED19A0JLT2 244 aaPredicted RBP19.68■□□□□ 0.74
CLN3-241ENST00000635861 TGFB1I1O43294 461 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 AKAP3O75969 853 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 TNNI1P19237 187 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 ANXA13P27216 316 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 ATXN1P54253 815 aaKnown RBP19.68■□□□□ 0.74
CLN3-241ENST00000635861 DMWDQ09019 674 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 SPEM2Q0P670 501 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 KCNB1Q14721 858 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 CSRP2Q16527 193 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 BMT2Q1RMZ1 405 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 DENND5BQ6ZUT9 1274 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 STKLD1Q8NE28 680 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 MYCBPAPQ8TBZ2 947 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 NETO1Q8TDF5 533 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 HPS3Q969F9 1004 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 CHFRQ96EP1 664 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 LOXL4Q96JB6 756 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 MMS19Q96T76 1030 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 ECT2Q9H8V3 914 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 TRPC7Q9HCX4 862 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 CRTAC1Q9NQ79 661 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 DUS2Q9NX74 493 aaKnown RBP19.68■□□□□ 0.74
CLN3-241ENST00000635861 GCNT4Q9P109 453 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 TFIP11Q9UBB9 837 aaKnown RBP19.68■□□□□ 0.74
CLN3-241ENST00000635861 ARHGAP26Q9UNA1 814 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 SLC8A2Q9UPR5 921 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 SDK1Q7Z5N4 2213 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 OTOL1A6NHN0 477 aaPredicted RBP19.68■□□□□ 0.74
CLN3-241ENST00000635861 LMO2P25791 158 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 GJA4P35212 333 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 IFNAR2P48551 515 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 NOP14P78316 857 aaKnown RBP19.68■□□□□ 0.74
CLN3-241ENST00000635861 CYP24A1Q07973 514 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 NR1H3Q13133 447 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 LPAL2Q16609 132 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 CEP68Q76N32 757 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 RIN3Q8TB24 985 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 SCFD1Q8WVM8 642 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 FAM84AQ96KN4 292 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 P2RY13Q9BPV8 354 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 TTLL2Q9BWV7 592 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 SEMA4GQ9NTN9 838 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 FAM13BQ9NYF5 915 aa19.68■□□□□ 0.74
CLN3-241ENST00000635861 POLR2DO15514 142 aaKnown RBP19.67■□□□□ 0.74
CLN3-241ENST00000635861 HCRTO43612 131 aa19.67■□□□□ 0.74
CLN3-241ENST00000635861 ATP2C2O75185 946 aa19.67■□□□□ 0.74
CLN3-241ENST00000635861 DLATP10515 647 aaKnown RBP19.67■□□□□ 0.74
CLN3-241ENST00000635861 ARSAP15289 507 aa19.67■□□□□ 0.74
CLN3-241ENST00000635861 HDCP19113 662 aa19.67■□□□□ 0.74
CLN3-241ENST00000635861 BDNFP23560 247 aa19.67■□□□□ 0.74
CLN3-241ENST00000635861 ATICP31939 592 aa19.67■□□□□ 0.74
CLN3-241ENST00000635861 GNL1P36915 607 aaPredicted RBP19.67■□□□□ 0.74
CLN3-241ENST00000635861 GRIK1P39086 918 aa19.67■□□□□ 0.74
CLN3-241ENST00000635861 PSMC1P62191 440 aaKnown RBP19.67■□□□□ 0.74
CLN3-241ENST00000635861 TNNC1P63316 161 aa19.67■□□□□ 0.74
CLN3-241ENST00000635861 HEATR6Q6AI08 1181 aaKnown RBP19.67■□□□□ 0.74
CLN3-241ENST00000635861 GOLGA5Q8TBA6 731 aa19.67■□□□□ 0.74
CLN3-241ENST00000635861 GAB3Q8WWW8 586 aa19.67■□□□□ 0.74
CLN3-241ENST00000635861 PCED1BQ96HM7 432 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms