RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, human

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-223	ENST00000627587	FAM124B	Q9H5Z6	455 aa	Predicted RBP	10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	SNX12	Q9UMY4	172 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	PCDHGC3	Q9UN70	934 aa		10.08	□□□□□ -0.8
PDLIM5-223	ENST00000627587	LOC730098	B7Z3J9	87 aa		10.07	□□□□□ -0.8
PDLIM5-223	ENST00000627587	PDE2A	O00408	941 aa	Predicted RBP	10.07	□□□□□ -0.8
PDLIM5-223	ENST00000627587	HCRT	O43612	131 aa		10.07	□□□□□ -0.8
PDLIM5-223	ENST00000627587	TBX10	O75333	385 aa		10.07	□□□□□ -0.8
PDLIM5-223	ENST00000627587	PAEP	P09466	180 aa		10.07	□□□□□ -0.8
PDLIM5-223	ENST00000627587	SRGAP2B	P0DMP2	458 aa		10.07	□□□□□ -0.8
PDLIM5-223	ENST00000627587	FGFR1	P11362	822 aa		10.07	□□□□□ -0.8
PDLIM5-223	ENST00000627587	CDH5	P33151	784 aa	Predicted RBP	10.07	□□□□□ -0.8
PDLIM5-223	ENST00000627587	PNPLA4	P41247	253 aa		10.07	□□□□□ -0.8
PDLIM5-223	ENST00000627587	NDST1	P52848	882 aa		10.07	□□□□□ -0.8
PDLIM5-223	ENST00000627587	GPC5	P78333	572 aa		10.07	□□□□□ -0.8
PDLIM5-223	ENST00000627587	CBX2	Q14781	532 aa	Predicted RBP	10.07	□□□□□ -0.8
PDLIM5-223	ENST00000627587	PPP1R2P3	Q6NXS1	205 aa		10.07	□□□□□ -0.8
PDLIM5-223	ENST00000627587	TRIM67	Q6ZTA4	783 aa		10.07	□□□□□ -0.8
PDLIM5-223	ENST00000627587	HFE2	Q6ZVN8	426 aa		10.07	□□□□□ -0.8
PDLIM5-223	ENST00000627587	CPNE8	Q86YQ8	564 aa		10.07	□□□□□ -0.8
PDLIM5-223	ENST00000627587	RHOT2	Q8IXI1	618 aa		10.07	□□□□□ -0.8
PDLIM5-223	ENST00000627587	C3orf58	Q8NDZ4	430 aa		10.07	□□□□□ -0.8
PDLIM5-223	ENST00000627587	COG1	Q8WTW3	980 aa		10.07	□□□□□ -0.8
PDLIM5-223	ENST00000627587	ZNF560	Q96MR9	790 aa		10.07	□□□□□ -0.8
PDLIM5-223	ENST00000627587	RPS6KC1	Q96S38	1066 aa		10.07	□□□□□ -0.8
PDLIM5-223	ENST00000627587	PAAF1	Q9BRP4	392 aa		10.07	□□□□□ -0.8
PDLIM5-223	ENST00000627587	TLE6	Q9H808	572 aa		10.07	□□□□□ -0.8
PDLIM5-223	ENST00000627587	SLC38A7	Q9NVC3	462 aa		10.07	□□□□□ -0.8
PDLIM5-223	ENST00000627587	GDAP2	Q9NXN4	497 aa		10.07	□□□□□ -0.8
PDLIM5-223	ENST00000627587	CYTH4	Q9UIA0	394 aa		10.07	□□□□□ -0.8
PDLIM5-223	ENST00000627587	MUTYH	Q9UIF7	546 aa		10.07	□□□□□ -0.8
PDLIM5-223	ENST00000627587	GTF3C4	Q9UKN8	822 aa		10.07	□□□□□ -0.8
PDLIM5-223	ENST00000627587	BARX2	Q9UMQ3	279 aa	Predicted RBP	10.07	□□□□□ -0.8
PDLIM5-223	ENST00000627587	SNX9	Q9Y5X1	595 aa		10.07	□□□□□ -0.8
PDLIM5-223	ENST00000627587	SAR1B	Q9Y6B6	198 aa		10.07	□□□□□ -0.8
PDLIM5-223	ENST00000627587	TCRBV5S1A1T	A0A578	114 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587		C9IYK1	514 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	LINC01565	O15544	149 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	TADA3	O75528	432 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	SKI	P12755	728 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	PRLR	P16471	622 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	RRM1	P23921	792 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	CXCR5	P32302	372 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	NSF	P46459	744 aa	Known RBP	10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	SCNN1G	P51170	649 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	PTPN5	P54829	565 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	LILRA4	P59901	499 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	NT5DC3	Q86UY8	548 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	ECHDC2	Q86YB7	292 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	PHF13	Q86YI8	300 aa	Predicted RBP	10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	CREG2	Q8IUH2	290 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	SMRP1	Q8NCR6	262 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	MICAL1	Q8TDZ2	1067 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	TMEM176A	Q96HP8	235 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	CALR3	Q96L12	384 aa	Known RBP	10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	OSBPL9	Q96SU4	736 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	PHF7	Q9BWX1	381 aa	Predicted RBP	10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	TRIM7	Q9C029	511 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	RGS18	Q9NS28	235 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	CLEC1B	Q9P126	229 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	GIT1	Q9Y2X7	761 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	HYOU1	Q9Y4L1	999 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	FNDC1	Q4ZHG4	1894 aa	Predicted RBP	10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	MYO7A	Q13402	2215 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	KPNA7	A9QM74	516 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	INPPL1	O15357	1258 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	MED7	O43513	233 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	B4GALT3	O60512	393 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	CD19	P15391	556 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	MMP8	P22894	467 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	NRIP1	P48552	1158 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	ZXDA	P98168	799 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	SPOUT1	Q5T280	376 aa	Known RBP	10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	DENND1B	Q6P3S1	775 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	SLC24A5	Q71RS6	500 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	SUGP1	Q8IWZ8	645 aa	Known RBP	10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	SYCE1	Q8N0S2	351 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	C12orf29	Q8N999	325 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	C1orf131	Q8NDD1	294 aa	Known RBP	10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	MNS1	Q8NEH6	495 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	PBXIP1	Q96AQ6	731 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	ZNF653	Q96CK0	615 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	PGBD4	Q96DM1	585 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	TRIM11	Q96F44	468 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	BTBD6	Q96KE9	485 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	PSMB7	Q99436	277 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	ELAC1	Q9H777	363 aa	Known RBP	10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	CTTNBP2NL	Q9P2B4	639 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	TJP2	Q9UDY2	1190 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	L1RE1	Q9UN81	338 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	LZTS1	Q9Y250	596 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	CEP83	Q9Y592	693 aa		10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587		V9GYY5	206 aa	Predicted RBP	10.06	□□□□□ -0.8
PDLIM5-223	ENST00000627587	TMEM221	A6NGB7	291 aa		10.05	□□□□□ -0.8
PDLIM5-223	ENST00000627587		M0R296	226 aa		10.05	□□□□□ -0.8
PDLIM5-223	ENST00000627587		O00370	1275 aa		10.05	□□□□□ -0.8
PDLIM5-223	ENST00000627587	HOXA2	O43364	376 aa		10.05	□□□□□ -0.8
PDLIM5-223	ENST00000627587	LSM8	O95777	96 aa	Known RBP	10.05	□□□□□ -0.8
PDLIM5-223	ENST00000627587	TH	P07101	528 aa		10.05	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms