RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 FAM32AQ9Y421 112 aaKnown RBP11.83□□□□□ -0.52
CLIP1-219ENST00000620786 SGPL1O95470 568 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 CAPZA2P47755 286 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 CARSP49589 748 aaKnown RBP11.83□□□□□ -0.52
CLIP1-219ENST00000620786 GYS2P54840 703 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 CENPCQ03188 943 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 TTC39BQ5VTQ0 682 aaPredicted RBP11.83□□□□□ -0.52
CLIP1-219ENST00000620786 WDR49Q8IV35 697 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 ZNF669Q96BR6 464 aaPredicted RBP11.83□□□□□ -0.52
CLIP1-219ENST00000620786 HES6Q96HZ4 224 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 PDCD2LQ9BRP1 358 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 DDX43Q9NXZ2 648 aaKnown RBP11.83□□□□□ -0.52
CLIP1-219ENST00000620786 PCDH8O95206 1070 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 HSPA1AP0DMV8 641 aaKnown RBP11.83□□□□□ -0.52
CLIP1-219ENST00000620786 HSPA1BP0DMV9 641 aaKnown RBP11.83□□□□□ -0.52
CLIP1-219ENST00000620786 GARTP22102 1010 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 CASP4P49662 377 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 NCALDP61601 193 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 TP53BP2Q13625 1128 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 LONRF1Q17RB8 773 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 ERAP2Q6P179 960 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 SLFN11Q7Z7L1 901 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 B4GALNT2Q8NHY0 566 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 ECT2Q9H8V3 914 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 PCDHB5Q9Y5E4 795 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 A0A1W2PQJ5 194 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 GTPBP10A4D1E9 387 aaKnown RBP11.83□□□□□ -0.52
CLIP1-219ENST00000620786 FDPSP14324 419 aaKnown RBP11.83□□□□□ -0.52
CLIP1-219ENST00000620786 FDFT1P37268 417 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 MED21Q13503 144 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 STARD3Q14849 445 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 PLCL1Q15111 1095 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 BOLA3Q53S33 107 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 PHACTR4Q8IZ21 702 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 CSGALNACT1Q8TDX6 532 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 ATP8B4Q8TF62 1192 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 MFSD1Q9H3U5 465 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 MRFAP1Q9Y605 127 aa11.83□□□□□ -0.52
CLIP1-219ENST00000620786 GMNCA6NCL1 334 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 PNMA6AP0CW24 399 aaPredicted RBP11.82□□□□□ -0.52
CLIP1-219ENST00000620786 AKAP5P24588 427 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 AP2B1P63010 937 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 POU4F1Q01851 419 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 TROAPQ12815 778 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 PPM1LQ5SGD2 360 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 UBE2Q2Q8WVN8 375 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 LRRC1Q9BTT6 524 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 CDYLQ9Y232 598 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 TIMM13Q9Y5L4 95 aaPredicted RBP11.82□□□□□ -0.52
CLIP1-219ENST00000620786 F9P00740 461 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 CXCL8P10145 99 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 SOX10P56693 466 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 STX3Q13277 289 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 FAM171A1Q5VUB5 890 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 ADGRA1Q86SQ6 560 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 C17orf80Q9BSJ5 609 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 MRPL9Q9BYD2 267 aaKnown RBP11.82□□□□□ -0.52
CLIP1-219ENST00000620786 UBXN6Q9BZV1 441 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 HPS4Q9NQG7 708 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 NR2E3Q9Y5X4 410 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 MST1RQ04912 1400 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 RBP3P10745 1247 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 PLA2G4AP47712 749 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 CENPAP49450 140 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 KIF2CQ99661 725 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 PRMT1Q99873 361 aaKnown RBP11.82□□□□□ -0.52
CLIP1-219ENST00000620786 ABHD16BQ9H3Z7 469 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 MSRAQ9UJ68 235 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 ITGA11Q9UKX5 1188 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 SPACA6W5XKT8 324 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 XYLBO75191 536 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 CTDNEP1O95476 244 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 OVOS1Q6IE37 1185 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 C3orf67Q6ZVT6 689 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 C4orf19Q8IY42 314 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 POP1Q99575 1024 aaKnown RBP11.82□□□□□ -0.52
CLIP1-219ENST00000620786 TSEN34Q9BSV6 310 aaKnown RBP11.82□□□□□ -0.52
CLIP1-219ENST00000620786 ATXN3LQ9H3M9 355 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 SPASTQ9UBP0 616 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 TRPV2Q9Y5S1 764 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 CBX4O00257 560 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 ALOX15P16050 662 aaPredicted RBP11.82□□□□□ -0.52
CLIP1-219ENST00000620786 KIRREL3Q8IZU9 778 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 LRRIQ1Q96JM4 1722 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 C9orf72Q96LT7 481 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 COPS7BQ9H9Q2 264 aaPredicted RBP11.82□□□□□ -0.52
CLIP1-219ENST00000620786 ZDHHC9Q9Y397 364 aa11.82□□□□□ -0.52
CLIP1-219ENST00000620786 SHMT1P34896 483 aa11.81□□□□□ -0.52
CLIP1-219ENST00000620786 BLVRAP53004 296 aa11.81□□□□□ -0.52
CLIP1-219ENST00000620786 INPP5AQ14642 412 aa11.81□□□□□ -0.52
CLIP1-219ENST00000620786 NR1I3Q14994 352 aa11.81□□□□□ -0.52
CLIP1-219ENST00000620786 FBXO47Q5MNV8 452 aa11.81□□□□□ -0.52
CLIP1-219ENST00000620786 PPIL6Q8IXY8 311 aa11.81□□□□□ -0.52
CLIP1-219ENST00000620786 CCDC33Q8N5R6 958 aa11.81□□□□□ -0.52
CLIP1-219ENST00000620786 FAM172AQ8WUF8 416 aa11.81□□□□□ -0.52
CLIP1-219ENST00000620786 MAGEB10Q96LZ2 347 aaPredicted RBP11.81□□□□□ -0.52
CLIP1-219ENST00000620786 ZFP42Q96MM3 310 aa11.81□□□□□ -0.52
CLIP1-219ENST00000620786 DBR1Q9UK59 544 aaKnown RBP11.81□□□□□ -0.52
CLIP1-219ENST00000620786 SMG5Q9UPR3 1016 aaKnown RBP11.81□□□□□ -0.52
CLIP1-219ENST00000620786 AAR2Q9Y312 384 aaKnown RBP11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms