RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 TNNC1P63316 161 aa12.74□□□□□ -0.37
UPF3B-204ENST00000619445 TNK2Q07912 1038 aa12.74□□□□□ -0.37
UPF3B-204ENST00000619445 MTF1Q14872 753 aa12.74□□□□□ -0.37
UPF3B-204ENST00000619445 PSMD6Q15008 389 aa12.74□□□□□ -0.37
UPF3B-204ENST00000619445 TRAPPC11Q7Z392 1133 aa12.74□□□□□ -0.37
UPF3B-204ENST00000619445 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.74□□□□□ -0.37
UPF3B-204ENST00000619445 GPIHBP1Q8IV16 184 aa12.74□□□□□ -0.37
UPF3B-204ENST00000619445 HSCBQ8IWL3 235 aa12.74□□□□□ -0.37
UPF3B-204ENST00000619445 SCN4BQ8IWT1 228 aa12.74□□□□□ -0.37
UPF3B-204ENST00000619445 C12orf56Q8IXR9 622 aa12.74□□□□□ -0.37
UPF3B-204ENST00000619445 CAMKK1Q8N5S9 505 aa12.74□□□□□ -0.37
UPF3B-204ENST00000619445 ZSWIM2Q8NEG5 633 aa12.74□□□□□ -0.37
UPF3B-204ENST00000619445 OSCP1Q8WVF1 389 aa12.74□□□□□ -0.37
UPF3B-204ENST00000619445 LOXL4Q96JB6 756 aa12.74□□□□□ -0.37
UPF3B-204ENST00000619445 MMS19Q96T76 1030 aa12.74□□□□□ -0.37
UPF3B-204ENST00000619445 CGRRF1Q99675 332 aa12.74□□□□□ -0.37
UPF3B-204ENST00000619445 RTKNQ9BST9 563 aa12.74□□□□□ -0.37
UPF3B-204ENST00000619445 FGFBP2Q9BYJ0 223 aa12.74□□□□□ -0.37
UPF3B-204ENST00000619445 SNX25Q9H3E2 840 aa12.74□□□□□ -0.37
UPF3B-204ENST00000619445 RBM12Q9NTZ6 932 aaKnown RBP12.74□□□□□ -0.37
UPF3B-204ENST00000619445 TRPM5Q9NZQ8 1165 aa12.74□□□□□ -0.37
UPF3B-204ENST00000619445 TPRP12270 2363 aaKnown RBP12.74□□□□□ -0.37
UPF3B-204ENST00000619445 PTPRDP23468 1912 aa12.74□□□□□ -0.37
UPF3B-204ENST00000619445 ZSCAN22P10073 491 aaPredicted RBP12.73□□□□□ -0.37
UPF3B-204ENST00000619445 GNL1P36915 607 aaPredicted RBP12.73□□□□□ -0.37
UPF3B-204ENST00000619445 GRIK1P39086 918 aa12.73□□□□□ -0.37
UPF3B-204ENST00000619445 FNTBP49356 437 aa12.73□□□□□ -0.37
UPF3B-204ENST00000619445 CYP24A1Q07973 514 aa12.73□□□□□ -0.37
UPF3B-204ENST00000619445 USP4Q13107 963 aa12.73□□□□□ -0.37
UPF3B-204ENST00000619445 TRPC3Q13507 836 aa12.73□□□□□ -0.37
UPF3B-204ENST00000619445 BMT2Q1RMZ1 405 aa12.73□□□□□ -0.37
UPF3B-204ENST00000619445 Q6ZS52 159 aa12.73□□□□□ -0.37
UPF3B-204ENST00000619445 DENND5BQ6ZUT9 1274 aa12.73□□□□□ -0.37
UPF3B-204ENST00000619445 CEP68Q76N32 757 aa12.73□□□□□ -0.37
UPF3B-204ENST00000619445 OSTM1Q86WC4 334 aa12.73□□□□□ -0.37
UPF3B-204ENST00000619445 CEP57L1Q8IYX8 460 aa12.73□□□□□ -0.37
UPF3B-204ENST00000619445 OR5B17Q8NGF7 314 aa12.73□□□□□ -0.37
UPF3B-204ENST00000619445 TTC8Q8TAM2 541 aa12.73□□□□□ -0.37
UPF3B-204ENST00000619445 MYCBPAPQ8TBZ2 947 aa12.73□□□□□ -0.37
UPF3B-204ENST00000619445 NETO1Q8TDF5 533 aa12.73□□□□□ -0.37
UPF3B-204ENST00000619445 KBTBD7Q8WVZ9 684 aa12.73□□□□□ -0.37
UPF3B-204ENST00000619445 SYAP1Q96A49 352 aaPredicted RBP12.73□□□□□ -0.37
UPF3B-204ENST00000619445 ACDQ96AP0 544 aa12.73□□□□□ -0.37
UPF3B-204ENST00000619445 P2RY13Q9BPV8 354 aa12.73□□□□□ -0.37
UPF3B-204ENST00000619445 ELOVL4Q9GZR5 314 aa12.73□□□□□ -0.37
UPF3B-204ENST00000619445 SMG9Q9H0W8 520 aaKnown RBP12.73□□□□□ -0.37
UPF3B-204ENST00000619445 EBF3Q9H4W6 596 aa12.73□□□□□ -0.37
UPF3B-204ENST00000619445 TRPC7Q9HCX4 862 aa12.73□□□□□ -0.37
UPF3B-204ENST00000619445 HPS4Q9NQG7 708 aa12.73□□□□□ -0.37
UPF3B-204ENST00000619445 DUS2Q9NX74 493 aaKnown RBP12.73□□□□□ -0.37
UPF3B-204ENST00000619445 TFIP11Q9UBB9 837 aaKnown RBP12.73□□□□□ -0.37
UPF3B-204ENST00000619445 ARHGAP26Q9UNA1 814 aa12.73□□□□□ -0.37
UPF3B-204ENST00000619445 SLC8A2Q9UPR5 921 aa12.73□□□□□ -0.37
UPF3B-204ENST00000619445 CCL26Q9Y258 94 aa12.73□□□□□ -0.37
UPF3B-204ENST00000619445 ATP8B3O60423 1300 aa12.72□□□□□ -0.37
UPF3B-204ENST00000619445 CNOT1A5YKK6 2376 aaKnown RBP12.72□□□□□ -0.37
UPF3B-204ENST00000619445 SLC9A3R1O14745 358 aaPredicted RBP12.72□□□□□ -0.37
UPF3B-204ENST00000619445 POLR2DO15514 142 aaKnown RBP12.72□□□□□ -0.37
UPF3B-204ENST00000619445 NFATC1O95644 943 aa12.72□□□□□ -0.37
UPF3B-204ENST00000619445 MYL1P05976 194 aa12.72□□□□□ -0.37
UPF3B-204ENST00000619445 DLATP10515 647 aaKnown RBP12.72□□□□□ -0.37
UPF3B-204ENST00000619445 HDCP19113 662 aa12.72□□□□□ -0.37
UPF3B-204ENST00000619445 TRIM21P19474 475 aaKnown RBP12.72□□□□□ -0.37
UPF3B-204ENST00000619445 ME1P48163 572 aa12.72□□□□□ -0.37
UPF3B-204ENST00000619445 GPR15P49685 360 aa12.72□□□□□ -0.37
UPF3B-204ENST00000619445 NOP14P78316 857 aaKnown RBP12.72□□□□□ -0.37
UPF3B-204ENST00000619445 CYP27A1Q02318 531 aa12.72□□□□□ -0.37
UPF3B-204ENST00000619445 EHHADHQ08426 723 aa12.72□□□□□ -0.37
UPF3B-204ENST00000619445 ZNF77Q15935 545 aa12.72□□□□□ -0.37
UPF3B-204ENST00000619445 CSRP2Q16527 193 aa12.72□□□□□ -0.37
UPF3B-204ENST00000619445 LMBRD2Q68DH5 695 aaPredicted RBP12.72□□□□□ -0.37
UPF3B-204ENST00000619445 SHC4Q6S5L8 630 aa12.72□□□□□ -0.37
UPF3B-204ENST00000619445 DDX1Q92499 740 aaKnown RBP12.72□□□□□ -0.37
UPF3B-204ENST00000619445 MYLPFQ96A32 169 aa12.72□□□□□ -0.37
UPF3B-204ENST00000619445 C8orf48Q96LL4 319 aa12.72□□□□□ -0.37
UPF3B-204ENST00000619445 TTLL2Q9BWV7 592 aa12.72□□□□□ -0.37
UPF3B-204ENST00000619445 ECT2Q9H8V3 914 aa12.72□□□□□ -0.37
UPF3B-204ENST00000619445 USP25Q9UHP3 1055 aa12.72□□□□□ -0.37
UPF3B-204ENST00000619445 HELZP42694 1942 aaKnown RBP12.72□□□□□ -0.37
UPF3B-204ENST00000619445 SDK1Q7Z5N4 2213 aa12.72□□□□□ -0.37
UPF3B-204ENST00000619445 PTPRJQ12913 1337 aa12.72□□□□□ -0.37
UPF3B-204ENST00000619445 TGFB1I1O43294 461 aa12.71□□□□□ -0.37
UPF3B-204ENST00000619445 HRO43593 1189 aa12.71□□□□□ -0.37
UPF3B-204ENST00000619445 EXOC3O60645 756 aa12.71□□□□□ -0.37
UPF3B-204ENST00000619445 TADA3O75528 432 aa12.71□□□□□ -0.37
UPF3B-204ENST00000619445 F13A1P00488 732 aa12.71□□□□□ -0.37
UPF3B-204ENST00000619445 P4HA1P13674 534 aa12.71□□□□□ -0.37
UPF3B-204ENST00000619445 TGM1P22735 817 aa12.71□□□□□ -0.37
UPF3B-204ENST00000619445 GJA4P35212 333 aa12.71□□□□□ -0.37
UPF3B-204ENST00000619445 HOXD13P35453 343 aa12.71□□□□□ -0.37
UPF3B-204ENST00000619445 CYP2J2P51589 502 aa12.71□□□□□ -0.37
UPF3B-204ENST00000619445 CDR1P51861 262 aa12.71□□□□□ -0.37
UPF3B-204ENST00000619445 PSMD2Q13200 908 aa12.71□□□□□ -0.37
UPF3B-204ENST00000619445 KNOP1Q1ED39 458 aaKnown RBP12.71□□□□□ -0.37
UPF3B-204ENST00000619445 WDR72Q3MJ13 1102 aa12.71□□□□□ -0.37
UPF3B-204ENST00000619445 SDHAF4Q5VUM1 108 aa12.71□□□□□ -0.37
UPF3B-204ENST00000619445 FSTL4Q6MZW2 842 aa12.71□□□□□ -0.37
UPF3B-204ENST00000619445 CACNA2D4Q7Z3S7 1137 aa12.71□□□□□ -0.37
UPF3B-204ENST00000619445 DDX42Q86XP3 938 aaKnown RBP eCLIP12.71□□□□□ -0.37
UPF3B-204ENST00000619445 PDZD8Q8NEN9 1154 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms