RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 PHLDB3Q6NSJ2 640 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 OTOP3Q7RTS5 596 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 RAB20Q9NX57 234 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 PCDHB5Q9Y5E4 795 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 FREM2Q5SZK8 3169 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 GVINP1Q7Z2Y8 2422 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 H0Y858 1186 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 XYLBO75191 536 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 SCP2P22307 547 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 ABCD1P33897 745 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 PAK1Q13153 545 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 TDGQ13569 410 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 MYBPC2Q14324 1141 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 CLEC17AQ6ZS10 378 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 NT5DC4Q86YG4 428 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 SPATA2LQ8IUW3 424 aaPredicted RBP6.07□□□□□ -1.44
CPNE3-208ENST00000614678 THEM5Q8N1Q8 247 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 UBA3Q8TBC4 463 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 MYCBPAPQ8TBZ2 947 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 TMC2Q8TDI7 906 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 KREMEN1Q96MU8 473 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 HSD3B7Q9H2F3 369 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 SNX25Q9H3E2 840 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 CCSER2Q9H7U1 834 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 GKN1Q9NS71 199 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 KRT82Q9NSB4 513 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 EPS15L1Q9UBC2 864 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 USTQ9Y2C2 406 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 HEPACAM2A8MVW5 462 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 TRIM24O15164 1050 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 KIF20AO95235 890 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 HOXA9P31269 272 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 PNPLA4P41247 253 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 FMO5P49326 533 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 NLRP12P59046 1061 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 KCNH2Q12809 1159 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 INTS8Q75QN2 995 aaKnown RBP6.07□□□□□ -1.44
CPNE3-208ENST00000614678 FAM35AQ86V20 835 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 GPR65Q8IYL9 337 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 ZDHHC14Q8IZN3 488 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 SLC4A11Q8NBS3 891 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 USP13Q92995 863 aaPredicted RBP6.07□□□□□ -1.44
CPNE3-208ENST00000614678 ACSF2Q96CM8 615 aaPredicted RBP6.07□□□□□ -1.44
CPNE3-208ENST00000614678 BCO2Q9BYV7 579 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 NUP62CLQ9H1M0 184 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 NMUR1Q9HB89 426 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 TMEM8AQ9HCN3 771 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 CISHQ9NSE2 258 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.07□□□□□ -1.445e-7■■■□□ 17.3
CPNE3-208ENST00000614678 ARMCX3Q9UH62 379 aaPredicted RBP6.07□□□□□ -1.44
CPNE3-208ENST00000614678 FAM50BQ9Y247 325 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 NR2E1Q9Y466 385 aa6.07□□□□□ -1.44
CPNE3-208ENST00000614678 KMT2EQ8IZD2 1858 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 STK25O00506 426 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 EPHB6O15197 1021 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 GPR37L1O60883 481 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 ARSAP15289 507 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 RAD23BP54727 409 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 EPHB3P54753 998 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 TSPY1Q01534 308 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 CCDC40Q4G0X9 1142 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 KRT39Q6A163 491 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 IQCEQ6IPM2 695 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 PKN3Q6P5Z2 889 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 TSSK4Q6SA08 328 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 TTC30AQ86WT1 665 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 CLEC4CQ8WTT0 213 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 EBF3Q9H4W6 596 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 DUSP12Q9UNI6 340 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 PSMA7O14818 248 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 IKBKBO14920 756 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 KIAA0391O15091 583 aaKnown RBP6.06□□□□□ -1.44
CPNE3-208ENST00000614678 CYP26A1O43174 497 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 CILPO75339 1184 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 EPB41P11171 864 aaKnown RBP6.06□□□□□ -1.44
CPNE3-208ENST00000614678 GDI1P31150 447 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 EPHA5P54756 1037 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 MYL7Q01449 175 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 CREMQ03060 361 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 SIGLEC14Q08ET2 396 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 TAF10Q12962 218 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 CAVIN1Q6NZI2 390 aaKnown RBP6.06□□□□□ -1.44
CPNE3-208ENST00000614678 TRIM59Q8IWR1 403 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 PRSS33Q8NF86 280 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 GOLGA5Q8TBA6 731 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 TMEM174Q8WUU8 243 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 CNOT6LQ96LI5 555 aaKnown RBP6.06□□□□□ -1.44
CPNE3-208ENST00000614678 RMND1Q9NWS8 449 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 MYO16Q9Y6X6 1858 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 HHLA1C9JL84 531 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 ARNTLO00327 626 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 TNFRSF10BO14763 440 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 TACC1O75410 805 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 ATP1A3P13637 1013 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 KRT13P13646 458 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 LHX1P48742 406 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 SLC5A3P53794 718 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 POU5F1Q01860 360 aaKnown RBP6.06□□□□□ -1.44
CPNE3-208ENST00000614678 NFIL3Q16649 462 aa6.06□□□□□ -1.44
CPNE3-208ENST00000614678 SGSM1Q2NKQ1 1148 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms