RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 C1orf54Q8WWF1 131 aa21.26■□□□□ 0.99
UPF1-207ENST00000599848 ELAC2Q9BQ52 826 aaKnown RBP21.26■□□□□ 0.99
UPF1-207ENST00000599848 CCDC90BQ9GZT6 254 aa21.26■□□□□ 0.99
UPF1-207ENST00000599848 INTUQ9ULD6 942 aa21.26■□□□□ 0.99
UPF1-207ENST00000599848 CCDC195A0A1B0GUA6 201 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 PP2D1A8MPX8 630 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 TRIM16O95361 564 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 BYSLQ13895 437 aaKnown RBP21.25■□□□□ 0.99
UPF1-207ENST00000599848 HLA-DQA1Q5Y7H0 255 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 ZFYVE19Q96K21 471 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 RMND5AQ9H871 391 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 POLD4Q9HCU8 107 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 XPO7Q9UIA9 1087 aaKnown RBP21.25■□□□□ 0.99
UPF1-207ENST00000599848 SRP72O76094 671 aaKnown RBP21.25■□□□□ 0.99
UPF1-207ENST00000599848 SRGNP10124 158 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 NBPF9Q3BBW0 867 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 RIBC1Q8N443 379 aaPredicted RBP21.25■□□□□ 0.99
UPF1-207ENST00000599848 CEP70Q8NHQ1 597 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 L3MBTL3Q96JM7 780 aaPredicted RBP21.25■□□□□ 0.99
UPF1-207ENST00000599848 PSMC3IPQ9P2W1 217 aaPredicted RBP21.25■□□□□ 0.99
UPF1-207ENST00000599848 UMODL1Q5DID0 1318 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 ERN1O75460 977 aaKnown RBP21.25■□□□□ 0.99
UPF1-207ENST00000599848 ATP1A3P13637 1013 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 GAS2L1Q99501 681 aaPredicted RBP21.25■□□□□ 0.99
UPF1-207ENST00000599848 PRRG3Q9BZD7 231 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 PDGFCQ9NRA1 345 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 SYNPO2Q9UMS6 1093 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 A0A1B0GW55 424 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 NDUFS2O75306 463 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 TMEM253P0C7T8 217 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 DUX4L2P0CJ85 424 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 DUX4L3P0CJ86 424 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 DUX4L4P0CJ87 422 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 DUX4L5P0CJ88 424 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 DUX4L6P0CJ89 424 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 DUX4L7P0CJ90 424 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 SPATA18Q8TC71 538 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 CPA5Q8WXQ8 436 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 DUX4Q9UBX2 424 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 GRID1Q9ULK0 1009 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 COPG1Q9Y678 874 aaKnown RBP21.25■□□□□ 0.99
UPF1-207ENST00000599848 TRPC5OSA6NMA1 111 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 UCHL3P15374 230 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 GTF2E2P29084 291 aaKnown RBP21.25■□□□□ 0.99
UPF1-207ENST00000599848 PPM1AP35813 382 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 FTHL17Q9BXU8 183 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 NMRK2Q9NPI5 230 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 STK39Q9UEW8 545 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 FBXO10Q9UK96 956 aa21.25■□□□□ 0.99
UPF1-207ENST00000599848 DYNC1LI1Q9Y6G9 523 aaKnown RBP21.25■□□□□ 0.99
UPF1-207ENST00000599848 KITP10721 976 aa21.24■□□□□ 0.99
UPF1-207ENST00000599848 SSTR3P32745 418 aaPredicted RBP21.24■□□□□ 0.99
UPF1-207ENST00000599848 PPP2R2AP63151 447 aa21.24■□□□□ 0.99
UPF1-207ENST00000599848 NCAPHQ15003 741 aa21.24■□□□□ 0.99
UPF1-207ENST00000599848 PCBP1Q15365 356 aaKnown RBP eCLIP21.24■□□□□ 0.992e-9■■■■■ 36.2
UPF1-207ENST00000599848 KBTBD12Q3ZCT8 623 aa21.24■□□□□ 0.99
UPF1-207ENST00000599848 FKBP9O95302 570 aa21.24■□□□□ 0.99
UPF1-207ENST00000599848 IMPDH2P12268 514 aa21.24■□□□□ 0.99
UPF1-207ENST00000599848 VCAM1P19320 739 aa21.24■□□□□ 0.99
UPF1-207ENST00000599848 MFSD10Q14728 455 aa21.24■□□□□ 0.99
UPF1-207ENST00000599848 OVOS1Q6IE37 1185 aa21.24■□□□□ 0.99
UPF1-207ENST00000599848 C16orf89Q6UX73 402 aa21.24■□□□□ 0.99
UPF1-207ENST00000599848 FKBP9P1Q75LS8 142 aa21.24■□□□□ 0.99
UPF1-207ENST00000599848 FBXO16Q8IX29 292 aaPredicted RBP21.24■□□□□ 0.99
UPF1-207ENST00000599848 UROC1Q96N76 676 aa21.24■□□□□ 0.99
UPF1-207ENST00000599848 CDY2AQ9Y6F7 541 aa21.24■□□□□ 0.99
UPF1-207ENST00000599848 CDY1Q9Y6F8 540 aa21.24■□□□□ 0.99
UPF1-207ENST00000599848 MYPNQ86TC9 1320 aa21.24■□□□□ 0.99
UPF1-207ENST00000599848 CDH16O75309 829 aa21.24■□□□□ 0.99
UPF1-207ENST00000599848 GUCY2CP25092 1073 aa21.24■□□□□ 0.99
UPF1-207ENST00000599848 PLA2G4AP47712 749 aa21.24■□□□□ 0.99
UPF1-207ENST00000599848 STX3Q13277 289 aa21.24■□□□□ 0.99
UPF1-207ENST00000599848 CHADLQ6NUI6 762 aa21.24■□□□□ 0.99
UPF1-207ENST00000599848 WDR49Q8IV35 697 aa21.24■□□□□ 0.99
UPF1-207ENST00000599848 ADSSL1Q8N142 457 aa21.24■□□□□ 0.99
UPF1-207ENST00000599848 ZNF655Q8N720 491 aaPredicted RBP21.24■□□□□ 0.99
UPF1-207ENST00000599848 CDYLQ9Y232 598 aa21.24■□□□□ 0.99
UPF1-207ENST00000599848 FRMPD1Q5SYB0 1578 aa21.24■□□□□ 0.99
UPF1-207ENST00000599848 SNRPAP09012 282 aaKnown RBP21.24■□□□□ 0.99
UPF1-207ENST00000599848 GPC1P35052 558 aa21.24■□□□□ 0.99
UPF1-207ENST00000599848 POLR2LP62875 67 aaKnown RBP21.24■□□□□ 0.99
UPF1-207ENST00000599848 MIB1Q86YT6 1006 aa21.24■□□□□ 0.99
UPF1-207ENST00000599848 SIRT2Q8IXJ6 389 aa21.24■□□□□ 0.99
UPF1-207ENST00000599848 PRMT6Q96LA8 375 aaPredicted RBP21.24■□□□□ 0.99
UPF1-207ENST00000599848 TGS1Q96RS0 853 aaKnown RBP21.24■□□□□ 0.99
UPF1-207ENST00000599848 FBXO2Q9UK22 296 aaPredicted RBP21.24■□□□□ 0.99
UPF1-207ENST00000599848 DLC1Q96QB1 1528 aa21.23■□□□□ 0.99
UPF1-207ENST00000599848 NLRP9Q7RTR0 991 aa21.23■□□□□ 0.99
UPF1-207ENST00000599848 TMC2Q8TDI7 906 aa21.23■□□□□ 0.99
UPF1-207ENST00000599848 OSBPL8Q9BZF1 889 aa21.23■□□□□ 0.99
UPF1-207ENST00000599848 GANQ9H2C0 597 aa21.23■□□□□ 0.99
UPF1-207ENST00000599848 TBC1D13Q9NVG8 400 aa21.23■□□□□ 0.99
UPF1-207ENST00000599848 SYBUQ9NX95 663 aa21.23■□□□□ 0.99
UPF1-207ENST00000599848 CDKN2AIPQ9NXV6 580 aaPredicted RBP21.23■□□□□ 0.99
UPF1-207ENST00000599848 TTC26A0AVF1 554 aa21.23■□□□□ 0.99
UPF1-207ENST00000599848 ARHGEF9O43307 516 aa21.23■□□□□ 0.99
UPF1-207ENST00000599848 MYBPC2Q14324 1141 aa21.23■□□□□ 0.99
UPF1-207ENST00000599848 MAP1SQ66K74 1059 aaPredicted RBP21.23■□□□□ 0.99
UPF1-207ENST00000599848 C10orf53Q8N6V4 93 aa21.23■□□□□ 0.99
UPF1-207ENST00000599848 ARMC2Q8NEN0 867 aa21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms