RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 CHST7Q9NS84 486 aa16.33■□□□□ 0.2
UPF1-206ENST00000598471 KRT82Q9NSB4 513 aa16.33■□□□□ 0.2
UPF1-206ENST00000598471 CTTNBP2NLQ9P2B4 639 aa16.33■□□□□ 0.2
UPF1-206ENST00000598471 WDR35Q9P2L0 1181 aa16.33■□□□□ 0.2
UPF1-206ENST00000598471 MTRRQ9UBK8 725 aa16.33■□□□□ 0.2
UPF1-206ENST00000598471 CNOT8Q9UFF9 292 aaKnown RBP16.33■□□□□ 0.2
UPF1-206ENST00000598471 TFR2Q9UP52 801 aa16.33■□□□□ 0.2
UPF1-206ENST00000598471 BACE2Q9Y5Z0 518 aa16.33■□□□□ 0.2
UPF1-206ENST00000598471 A0A0U1RQJ8 604 aa16.32■□□□□ 0.2
UPF1-206ENST00000598471 XPO1O14980 1071 aaKnown RBP16.32■□□□□ 0.2
UPF1-206ENST00000598471 AP1G2O75843 785 aa16.32■□□□□ 0.2
UPF1-206ENST00000598471 FGF18O76093 207 aa16.32■□□□□ 0.2
UPF1-206ENST00000598471 CYP1A2P05177 515 aa16.32■□□□□ 0.2
UPF1-206ENST00000598471 CTNNB1P35222 781 aa16.32■□□□□ 0.2
UPF1-206ENST00000598471 NOP2P46087 812 aaKnown RBP16.32■□□□□ 0.2
UPF1-206ENST00000598471 PTPN20Q4JDL3 420 aa16.32■□□□□ 0.2
UPF1-206ENST00000598471 SLC39A12Q504Y0 691 aa16.32■□□□□ 0.2
UPF1-206ENST00000598471 TAS1R1Q7RTX1 841 aa16.32■□□□□ 0.2
UPF1-206ENST00000598471 DNAAF5Q86Y56 855 aa16.32■□□□□ 0.2
UPF1-206ENST00000598471 GPR65Q8IYL9 337 aa16.32■□□□□ 0.2
UPF1-206ENST00000598471 WDTC1Q8N5D0 677 aa16.32■□□□□ 0.2
UPF1-206ENST00000598471 ATRIPQ8WXE1 791 aa16.32■□□□□ 0.2
UPF1-206ENST00000598471 C18orf8Q96DM3 657 aa16.32■□□□□ 0.2
UPF1-206ENST00000598471 FUBP3Q96I24 572 aaKnown RBP eCLIP16.32■□□□□ 0.2
UPF1-206ENST00000598471 HSFY1Q96LI6 401 aa16.32■□□□□ 0.2
UPF1-206ENST00000598471 C16orf45Q96MC5 204 aaPredicted RBP16.32■□□□□ 0.2
UPF1-206ENST00000598471 SAMD11Q96NU1 681 aa16.32■□□□□ 0.2
UPF1-206ENST00000598471 MRPL47Q9HD33 250 aaKnown RBP16.32■□□□□ 0.2
UPF1-206ENST00000598471 UVRAGQ9P2Y5 699 aa16.32■□□□□ 0.2
UPF1-206ENST00000598471 TRIM10Q9UDY6 481 aa16.32■□□□□ 0.2
UPF1-206ENST00000598471 A0A1W2PPC1 479 aa16.31■□□□□ 0.2
UPF1-206ENST00000598471 FAM170AA1A519 330 aa16.31■□□□□ 0.2
UPF1-206ENST00000598471 LINC01553A4QN01 128 aa16.31■□□□□ 0.2
UPF1-206ENST00000598471 GRXCR1A8MXD5 290 aa16.31■□□□□ 0.2
UPF1-206ENST00000598471 CLDN5O00501 218 aa16.31■□□□□ 0.2
UPF1-206ENST00000598471 SOX1O00570 391 aaPredicted RBP16.31■□□□□ 0.2
UPF1-206ENST00000598471 BMPR1AP36894 532 aa16.31■□□□□ 0.2
UPF1-206ENST00000598471 PLA2G4AP47712 749 aa16.31■□□□□ 0.2
UPF1-206ENST00000598471 DSG1Q02413 1049 aa16.31■□□□□ 0.2
UPF1-206ENST00000598471 TCEAL1Q15170 157 aa16.31■□□□□ 0.2
UPF1-206ENST00000598471 CCDC142Q17RM4 750 aa16.31■□□□□ 0.2
UPF1-206ENST00000598471 FAM109BQ6ICB4 259 aaPredicted RBP16.31■□□□□ 0.2
UPF1-206ENST00000598471 DNAJC24Q6P3W2 148 aa16.31■□□□□ 0.2
UPF1-206ENST00000598471 PAQR9Q6ZVX9 377 aa16.31■□□□□ 0.2
UPF1-206ENST00000598471 VPS52Q8N1B4 723 aa16.31■□□□□ 0.2
UPF1-206ENST00000598471 TRIM58Q8NG06 486 aa16.31■□□□□ 0.2
UPF1-206ENST00000598471 C2orf15Q8WU43 125 aaKnown RBP16.31■□□□□ 0.2
UPF1-206ENST00000598471 SLC35F5Q8WV83 523 aa16.31■□□□□ 0.2
UPF1-206ENST00000598471 ARHGEF26Q96DR7 871 aa16.31■□□□□ 0.2
UPF1-206ENST00000598471 TMEM209Q96SK2 561 aa16.31■□□□□ 0.2
UPF1-206ENST00000598471 CPXM1Q96SM3 734 aa16.31■□□□□ 0.2
UPF1-206ENST00000598471 VN1R3Q9BXE9 311 aa16.31■□□□□ 0.2
UPF1-206ENST00000598471 DMAP1Q9NPF5 467 aaPredicted RBP16.31■□□□□ 0.2
UPF1-206ENST00000598471 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.31■□□□□ 0.2
UPF1-206ENST00000598471 PARVAQ9NVD7 372 aa16.31■□□□□ 0.2
UPF1-206ENST00000598471 CYTH4Q9UIA0 394 aa16.31■□□□□ 0.2
UPF1-206ENST00000598471 PCDHB5Q9Y5E4 795 aa16.31■□□□□ 0.2
UPF1-206ENST00000598471 PCDHA11Q9Y5I1 949 aa16.31■□□□□ 0.2
UPF1-206ENST00000598471 LCHNA4D1U4 455 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 TBC1D4O60343 1298 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 RB1P06400 928 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 OR4Q2P0C623 313 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 LINC00271P0C7V0 271 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 RRM1P23921 792 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 GABRB2P47870 512 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 RGS7P49802 495 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 RABGGTBP53611 331 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 HADHBP55084 474 aaKnown RBP16.3■□□□□ 0.2
UPF1-206ENST00000598471 ARPP19P56211 112 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 GSCP56915 257 aaPredicted RBP16.3■□□□□ 0.2
UPF1-206ENST00000598471 GNG11P61952 73 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 TAP1Q03518 808 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 PTP4A2Q12974 167 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 GPR17Q13304 367 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 ZNF268Q14587 947 aaPredicted RBP16.3■□□□□ 0.2
UPF1-206ENST00000598471 CFAP221Q4G0U5 840 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 PRSS55Q6UWB4 352 aaPredicted RBP16.3■□□□□ 0.2
UPF1-206ENST00000598471 VSTM1Q6UX27 236 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 CLEC20AQ6ZU45 233 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 NYAP1Q6ZVC0 841 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 LRRTM3Q86VH5 581 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 ZDHHC17Q8IUH5 632 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 KLHL23Q8NBE8 558 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 FBXO22Q8NEZ5 403 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 SLC35G2Q8TBE7 412 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 SPPL2BQ8TCT7 592 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 NUP85Q9BW27 656 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 SLC4A5Q9BY07 1137 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 UBXN6Q9BZV1 441 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 LRRC4Q9HBW1 653 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 ABCB6Q9NP58 842 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 MRPL17Q9NRX2 175 aaKnown RBP16.3■□□□□ 0.2
UPF1-206ENST00000598471 TMLHEQ9NVH6 421 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 LZTS1Q9Y250 596 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 PAXBP1Q9Y5B6 917 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 CDY1Q9Y6F8 540 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 DUSP10Q9Y6W6 482 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 KIAA1671Q9BY89 1806 aa16.3■□□□□ 0.2
UPF1-206ENST00000598471 VWA8A3KMH1 1905 aa16.29■□□□□ 0.2
UPF1-206ENST00000598471 C2CD2LO14523 706 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms