RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 OSTM1Q86WC4 334 aa14.56□□□□□ -0.08
TRIM28-211ENST00000597968 GOLGA5Q8TBA6 731 aa14.56□□□□□ -0.08
TRIM28-211ENST00000597968 MYCBPAPQ8TBZ2 947 aa14.56□□□□□ -0.08
TRIM28-211ENST00000597968 KBTBD7Q8WVZ9 684 aa14.56□□□□□ -0.08
TRIM28-211ENST00000597968 SYT15Q9BQS2 421 aa14.56□□□□□ -0.08
TRIM28-211ENST00000597968 TTLL2Q9BWV7 592 aa14.56□□□□□ -0.08
TRIM28-211ENST00000597968 FGFBP2Q9BYJ0 223 aa14.56□□□□□ -0.08
TRIM28-211ENST00000597968 EBF3Q9H4W6 596 aa14.56□□□□□ -0.08
TRIM28-211ENST00000597968 SEMA4GQ9NTN9 838 aa14.56□□□□□ -0.08
TRIM28-211ENST00000597968 ARHGAP26Q9UNA1 814 aa14.56□□□□□ -0.08
TRIM28-211ENST00000597968 SLC8A2Q9UPR5 921 aa14.56□□□□□ -0.08
TRIM28-211ENST00000597968 SLC30A4O14863 429 aa14.55□□□□□ -0.08
TRIM28-211ENST00000597968 CKMP06732 381 aa14.55□□□□□ -0.08
TRIM28-211ENST00000597968 ACAT1P24752 427 aaKnown RBP14.55□□□□□ -0.08
TRIM28-211ENST00000597968 ANXA13P27216 316 aa14.55□□□□□ -0.08
TRIM28-211ENST00000597968 IFNAR2P48551 515 aa14.55□□□□□ -0.08
TRIM28-211ENST00000597968 GPR15P49685 360 aa14.55□□□□□ -0.08
TRIM28-211ENST00000597968 KCNB1Q14721 858 aa14.55□□□□□ -0.08
TRIM28-211ENST00000597968 PSMD6Q15008 389 aa14.55□□□□□ -0.08
TRIM28-211ENST00000597968 FOXD4L5Q5VV16 416 aaPredicted RBP14.55□□□□□ -0.08
TRIM28-211ENST00000597968 FSTL4Q6MZW2 842 aa14.55□□□□□ -0.08
TRIM28-211ENST00000597968 CACNA2D4Q7Z3S7 1137 aa14.55□□□□□ -0.08
TRIM28-211ENST00000597968 CBWD2Q8IUF1 395 aa14.55□□□□□ -0.08
TRIM28-211ENST00000597968 GPIHBP1Q8IV16 184 aa14.55□□□□□ -0.08
TRIM28-211ENST00000597968 XXYLT1Q8NBI6 393 aa14.55□□□□□ -0.08
TRIM28-211ENST00000597968 OR5B17Q8NGF7 314 aa14.55□□□□□ -0.08
TRIM28-211ENST00000597968 GAB3Q8WWW8 586 aa14.55□□□□□ -0.08
TRIM28-211ENST00000597968 FOXD4L4Q8WXT5 416 aaPredicted RBP14.55□□□□□ -0.08
TRIM28-211ENST00000597968 ACDQ96AP0 544 aa14.55□□□□□ -0.08
TRIM28-211ENST00000597968 C8orf48Q96LL4 319 aa14.55□□□□□ -0.08
TRIM28-211ENST00000597968 CGRRF1Q99675 332 aa14.55□□□□□ -0.08
TRIM28-211ENST00000597968 P2RY13Q9BPV8 354 aa14.55□□□□□ -0.08
TRIM28-211ENST00000597968 SMG9Q9H0W8 520 aaKnown RBP14.55□□□□□ -0.08
TRIM28-211ENST00000597968 ECT2Q9H8V3 914 aa14.55□□□□□ -0.08
TRIM28-211ENST00000597968 VRTNQ9H8Y1 702 aa14.55□□□□□ -0.08
TRIM28-211ENST00000597968 AGPAT3Q9NRZ7 376 aa14.55□□□□□ -0.08
TRIM28-211ENST00000597968 DUS2Q9NX74 493 aaKnown RBP14.55□□□□□ -0.08
TRIM28-211ENST00000597968 GCNT4Q9P109 453 aa14.55□□□□□ -0.08
TRIM28-211ENST00000597968 PCDHGA5Q9Y5G8 931 aa14.55□□□□□ -0.08
TRIM28-211ENST00000597968 MED19A0JLT2 244 aaPredicted RBP14.54□□□□□ -0.08
TRIM28-211ENST00000597968 TGFB1I1O43294 461 aa14.54□□□□□ -0.08
TRIM28-211ENST00000597968 NFATC1O95644 943 aa14.54□□□□□ -0.08
TRIM28-211ENST00000597968 HDCP19113 662 aa14.54□□□□□ -0.08
TRIM28-211ENST00000597968 TNNI1P19237 187 aa14.54□□□□□ -0.08
TRIM28-211ENST00000597968 GJA4P35212 333 aa14.54□□□□□ -0.08
TRIM28-211ENST00000597968 HOXD13P35453 343 aa14.54□□□□□ -0.08
TRIM28-211ENST00000597968 LIMK1P53667 647 aa14.54□□□□□ -0.08
TRIM28-211ENST00000597968 SPEM2Q0P670 501 aa14.54□□□□□ -0.08
TRIM28-211ENST00000597968 PRR23CQ6ZRP0 262 aa14.54□□□□□ -0.08
TRIM28-211ENST00000597968 CEP68Q76N32 757 aa14.54□□□□□ -0.08
TRIM28-211ENST00000597968 SYT13Q7L8C5 426 aa14.54□□□□□ -0.08
TRIM28-211ENST00000597968 C11orf74Q86VG3 221 aa14.54□□□□□ -0.08
TRIM28-211ENST00000597968 SCN4BQ8IWT1 228 aa14.54□□□□□ -0.08
TRIM28-211ENST00000597968 TTC8Q8TAM2 541 aa14.54□□□□□ -0.08
TRIM28-211ENST00000597968 NOC3LQ8WTT2 800 aaKnown RBP14.54□□□□□ -0.08
TRIM28-211ENST00000597968 CD101Q93033 1021 aa14.54□□□□□ -0.08
TRIM28-211ENST00000597968 MYLPFQ96A32 169 aa14.54□□□□□ -0.08
TRIM28-211ENST00000597968 SYAP1Q96A49 352 aaPredicted RBP14.54□□□□□ -0.08
TRIM28-211ENST00000597968 CHFRQ96EP1 664 aa14.54□□□□□ -0.08
TRIM28-211ENST00000597968 ZC3H10Q96K80 434 aaKnown RBP14.54□□□□□ -0.08
TRIM28-211ENST00000597968 MMS19Q96T76 1030 aa14.54□□□□□ -0.08
TRIM28-211ENST00000597968 ELOVL4Q9GZR5 314 aa14.54□□□□□ -0.08
TRIM28-211ENST00000597968 PARD6AQ9NPB6 346 aa14.54□□□□□ -0.08
TRIM28-211ENST00000597968 FAM13BQ9NYF5 915 aa14.54□□□□□ -0.08
TRIM28-211ENST00000597968 TRPM5Q9NZQ8 1165 aa14.54□□□□□ -0.08
TRIM28-211ENST00000597968 EBF1Q9UH73 591 aa14.54□□□□□ -0.08
TRIM28-211ENST00000597968 CFAP45Q9UL16 551 aa14.54□□□□□ -0.08
TRIM28-211ENST00000597968 DENND4CQ5VZ89 1909 aa14.54□□□□□ -0.08
TRIM28-211ENST00000597968 PTPRJQ12913 1337 aa14.53□□□□□ -0.08
TRIM28-211ENST00000597968 OTOL1A6NHN0 477 aaPredicted RBP14.53□□□□□ -0.08
TRIM28-211ENST00000597968 SLC9A3R1O14745 358 aaPredicted RBP14.53□□□□□ -0.08
TRIM28-211ENST00000597968 LMO2P25791 158 aa14.53□□□□□ -0.08
TRIM28-211ENST00000597968 GNL1P36915 607 aaPredicted RBP14.53□□□□□ -0.08
TRIM28-211ENST00000597968 GRIK1P39086 918 aa14.53□□□□□ -0.08
TRIM28-211ENST00000597968 RAP1GAPP47736 663 aa14.53□□□□□ -0.08
TRIM28-211ENST00000597968 GALK1P51570 392 aa14.53□□□□□ -0.08
TRIM28-211ENST00000597968 TNNC1P63316 161 aa14.53□□□□□ -0.08
TRIM28-211ENST00000597968 SLC7A9P82251 487 aa14.53□□□□□ -0.08
TRIM28-211ENST00000597968 CYP24A1Q07973 514 aa14.53□□□□□ -0.08
TRIM28-211ENST00000597968 PSMD2Q13200 908 aa14.53□□□□□ -0.08
TRIM28-211ENST00000597968 EML3Q32P44 896 aa14.53□□□□□ -0.08
TRIM28-211ENST00000597968 TRIM68Q6AZZ1 485 aa14.53□□□□□ -0.08
TRIM28-211ENST00000597968 SHC4Q6S5L8 630 aa14.53□□□□□ -0.08
TRIM28-211ENST00000597968 DDX42Q86XP3 938 aaKnown RBP eCLIP14.53□□□□□ -0.08
TRIM28-211ENST00000597968 FAM160A2Q8N612 972 aaPredicted RBP14.53□□□□□ -0.08
TRIM28-211ENST00000597968 PDZD8Q8NEN9 1154 aa14.53□□□□□ -0.08
TRIM28-211ENST00000597968 SCFD1Q8WVM8 642 aa14.53□□□□□ -0.08
TRIM28-211ENST00000597968 OVCA2Q8WZ82 227 aa14.53□□□□□ -0.08
TRIM28-211ENST00000597968 DHX58Q96C10 678 aa14.53□□□□□ -0.08
TRIM28-211ENST00000597968 PCED1BQ96HM7 432 aa14.53□□□□□ -0.08
TRIM28-211ENST00000597968 DUSP9Q99956 384 aaKnown RBP14.53□□□□□ -0.08
TRIM28-211ENST00000597968 SNX25Q9H3E2 840 aa14.53□□□□□ -0.08
TRIM28-211ENST00000597968 TRPC7Q9HCX4 862 aa14.53□□□□□ -0.08
TRIM28-211ENST00000597968 CRTAC1Q9NQ79 661 aa14.53□□□□□ -0.08
TRIM28-211ENST00000597968 TFIP11Q9UBB9 837 aaKnown RBP14.53□□□□□ -0.08
TRIM28-211ENST00000597968 CEP250Q9BV73 2442 aa14.52□□□□□ -0.08
TRIM28-211ENST00000597968 TULP1O00294 542 aaPredicted RBP14.52□□□□□ -0.09
TRIM28-211ENST00000597968 POLR2DO15514 142 aaKnown RBP14.52□□□□□ -0.09
TRIM28-211ENST00000597968 RNF40O75150 1001 aa14.52□□□□□ -0.09
TRIM28-211ENST00000597968 RPP40O75818 363 aaKnown RBP14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms