RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 TDP1Q9NUW8 608 aa13.39□□□□□ -0.27
UPF1-203ENST00000594504 F5P12259 2224 aa13.39□□□□□ -0.27
UPF1-203ENST00000594504 TADA3O75528 432 aa13.38□□□□□ -0.27
UPF1-203ENST00000594504 KIF20AO95235 890 aa13.38□□□□□ -0.27
UPF1-203ENST00000594504 CSH1P0DML2 217 aa13.38□□□□□ -0.27
UPF1-203ENST00000594504 CSH2P0DML3 217 aa13.38□□□□□ -0.27
UPF1-203ENST00000594504 LMO2P25791 158 aa13.38□□□□□ -0.27
UPF1-203ENST00000594504 GALK1P51570 392 aa13.38□□□□□ -0.27
UPF1-203ENST00000594504 RBP5P82980 135 aa13.38□□□□□ -0.27
UPF1-203ENST00000594504 PLCB2Q00722 1185 aa13.38□□□□□ -0.27
UPF1-203ENST00000594504 PNOCQ13519 176 aa13.38□□□□□ -0.27
UPF1-203ENST00000594504 KNOP1Q1ED39 458 aaKnown RBP13.38□□□□□ -0.27
UPF1-203ENST00000594504 SOWAHAQ2M3V2 549 aa13.38□□□□□ -0.27
UPF1-203ENST00000594504 HS2ST1Q7LGA3 356 aa13.38□□□□□ -0.27
UPF1-203ENST00000594504 MON1AQ86VX9 555 aa13.38□□□□□ -0.27
UPF1-203ENST00000594504 SCN4BQ8IWT1 228 aa13.38□□□□□ -0.27
UPF1-203ENST00000594504 NELFCDQ8IXH7 590 aa13.38□□□□□ -0.27
UPF1-203ENST00000594504 GPD1LQ8N335 351 aa13.38□□□□□ -0.27
UPF1-203ENST00000594504 OR5B17Q8NGF7 314 aa13.38□□□□□ -0.27
UPF1-203ENST00000594504 TRPC7Q9HCX4 862 aa13.38□□□□□ -0.27
UPF1-203ENST00000594504 RMND1Q9NWS8 449 aa13.38□□□□□ -0.27
UPF1-203ENST00000594504 CGNQ9P2M7 1197 aaKnown RBP13.38□□□□□ -0.27
UPF1-203ENST00000594504 PTPRJQ12913 1337 aa13.38□□□□□ -0.27
UPF1-203ENST00000594504 RALGAPA1Q6GYQ0 2036 aa13.37□□□□□ -0.27
UPF1-203ENST00000594504 PRR5-ARHGAP8B1AHC4 643 aa13.37□□□□□ -0.27
UPF1-203ENST00000594504 GABRDO14764 452 aa13.37□□□□□ -0.27
UPF1-203ENST00000594504 TGFB1I1O43294 461 aa13.37□□□□□ -0.27
UPF1-203ENST00000594504 GDF9O60383 454 aa13.37□□□□□ -0.27
UPF1-203ENST00000594504 PAPSS2O95340 614 aaPredicted RBP13.37□□□□□ -0.27
UPF1-203ENST00000594504 SMC2O95347 1197 aa13.37□□□□□ -0.27
UPF1-203ENST00000594504 EGFP01133 1207 aa13.37□□□□□ -0.27
UPF1-203ENST00000594504 RETP07949 1114 aa13.37□□□□□ -0.27
UPF1-203ENST00000594504 TMEM191BP0C7N4 346 aa13.37□□□□□ -0.27
UPF1-203ENST00000594504 ARHGAP8P85298 464 aa13.37□□□□□ -0.27
UPF1-203ENST00000594504 MYL7Q01449 175 aa13.37□□□□□ -0.27
UPF1-203ENST00000594504 LMNB2Q03252 620 aa13.37□□□□□ -0.27
UPF1-203ENST00000594504 NFE2Q16621 373 aaPredicted RBP13.37□□□□□ -0.27
UPF1-203ENST00000594504 TMEM196Q5HYL7 178 aa13.37□□□□□ -0.27
UPF1-203ENST00000594504 CEP68Q76N32 757 aa13.37□□□□□ -0.27
UPF1-203ENST00000594504 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.37□□□□□ -0.27
UPF1-203ENST00000594504 CBWD2Q8IUF1 395 aa13.37□□□□□ -0.27
UPF1-203ENST00000594504 SPATA2LQ8IUW3 424 aaPredicted RBP13.37□□□□□ -0.27
UPF1-203ENST00000594504 ADGRF2Q8IZF7 708 aa13.37□□□□□ -0.27
UPF1-203ENST00000594504 TMEM86AQ8N2M4 240 aa13.37□□□□□ -0.27
UPF1-203ENST00000594504 FAM160A2Q8N612 972 aaPredicted RBP13.37□□□□□ -0.27
UPF1-203ENST00000594504 LRRC52Q8N7C0 313 aa13.37□□□□□ -0.27
UPF1-203ENST00000594504 RDH13Q8NBN7 331 aa13.37□□□□□ -0.27
UPF1-203ENST00000594504 GOLGA5Q8TBA6 731 aa13.37□□□□□ -0.27
UPF1-203ENST00000594504 MRPS31Q92665 395 aaKnown RBP13.37□□□□□ -0.27
UPF1-203ENST00000594504 GBP4Q96PP9 640 aa13.37□□□□□ -0.27
UPF1-203ENST00000594504 GSDMAQ96QA5 445 aa13.37□□□□□ -0.27
UPF1-203ENST00000594504 AGPAT3Q9NRZ7 376 aa13.37□□□□□ -0.27
UPF1-203ENST00000594504 SEMA4GQ9NTN9 838 aa13.37□□□□□ -0.27
UPF1-203ENST00000594504 INTS13Q9NVM9 706 aa13.37□□□□□ -0.27
UPF1-203ENST00000594504 GDAP2Q9NXN4 497 aa13.37□□□□□ -0.27
UPF1-203ENST00000594504 ITGA11Q9UKX5 1188 aa13.37□□□□□ -0.27
UPF1-203ENST00000594504 CDV3Q9UKY7 258 aaKnown RBP13.37□□□□□ -0.27
UPF1-203ENST00000594504 OTOGLQ3ZCN5 2332 aa13.37□□□□□ -0.27
UPF1-203ENST00000594504 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.36□□□□□ -0.27
UPF1-203ENST00000594504 TRDMT1O14717 391 aaKnown RBP13.36□□□□□ -0.27
UPF1-203ENST00000594504 AXIN1O15169 862 aa13.36□□□□□ -0.27
UPF1-203ENST00000594504 NOL4O94818 638 aa13.36□□□□□ -0.27
UPF1-203ENST00000594504 PDGFRBP09619 1106 aa13.36□□□□□ -0.27
UPF1-203ENST00000594504 DDX6P26196 483 aaKnown RBP eCLIP13.36□□□□□ -0.27
UPF1-203ENST00000594504 PSMC1P62191 440 aaKnown RBP13.36□□□□□ -0.27
UPF1-203ENST00000594504 RPL10AP62906 217 aaKnown RBP13.36□□□□□ -0.27
UPF1-203ENST00000594504 CCDC6Q16204 474 aa13.36□□□□□ -0.27
UPF1-203ENST00000594504 CC2D1AQ6P1N0 951 aaPredicted RBP13.36□□□□□ -0.27
UPF1-203ENST00000594504 WDR5BQ86VZ2 330 aa13.36□□□□□ -0.27
UPF1-203ENST00000594504 C12orf56Q8IXR9 622 aa13.36□□□□□ -0.27
UPF1-203ENST00000594504 SYNPOQ8N3V7 929 aa13.36□□□□□ -0.27
UPF1-203ENST00000594504 TOP6BLQ8N6T0 577 aa13.36□□□□□ -0.27
UPF1-203ENST00000594504 ARL14EPQ8N8R7 260 aaPredicted RBP13.36□□□□□ -0.27
UPF1-203ENST00000594504 SPATA20Q8TB22 786 aa13.36□□□□□ -0.27
UPF1-203ENST00000594504 KBTBD7Q8WVZ9 684 aa13.36□□□□□ -0.27
UPF1-203ENST00000594504 SMARCE1Q969G3 411 aa13.36□□□□□ -0.27
UPF1-203ENST00000594504 ANKRD36BP1Q96IX9 119 aa13.36□□□□□ -0.27
UPF1-203ENST00000594504 RTKNQ9BST9 563 aa13.36□□□□□ -0.27
UPF1-203ENST00000594504 GTPBP4Q9BZE4 634 aaKnown RBP13.36□□□□□ -0.27
UPF1-203ENST00000594504 LINC00597Q9H2U6 94 aa13.36□□□□□ -0.27
UPF1-203ENST00000594504 KIAA1586Q9HCI6 787 aa13.36□□□□□ -0.27
UPF1-203ENST00000594504 HSPBP1Q9NZL4 362 aa13.36□□□□□ -0.27
UPF1-203ENST00000594504 PCDHA5Q9Y5H7 936 aa13.36□□□□□ -0.27
UPF1-203ENST00000594504 EP300Q09472 2414 aaPredicted RBP13.36□□□□□ -0.27
UPF1-203ENST00000594504 ANAPC1Q9H1A4 1944 aa13.36□□□□□ -0.27
UPF1-203ENST00000594504 C2orf78A6NCI8 922 aa13.35□□□□□ -0.27
UPF1-203ENST00000594504 ANTXRLA6NF34 631 aa13.35□□□□□ -0.27
UPF1-203ENST00000594504 RNF40O75150 1001 aa13.35□□□□□ -0.27
UPF1-203ENST00000594504 CST3P01034 146 aaPredicted RBP13.35□□□□□ -0.27
UPF1-203ENST00000594504 SDHBP21912 280 aa13.35□□□□□ -0.27
UPF1-203ENST00000594504 CNR2P34972 360 aa13.35□□□□□ -0.27
UPF1-203ENST00000594504 GJA4P35212 333 aa13.35□□□□□ -0.27
UPF1-203ENST00000594504 LHX1P48742 406 aa13.35□□□□□ -0.27
UPF1-203ENST00000594504 GRSF1Q12849 480 aaKnown RBP eCLIP13.35□□□□□ -0.27
UPF1-203ENST00000594504 FAM171BQ6P995 826 aa13.35□□□□□ -0.27
UPF1-203ENST00000594504 PRR23CQ6ZRP0 262 aa13.35□□□□□ -0.27
UPF1-203ENST00000594504 GUF1Q8N442 669 aaKnown RBP13.35□□□□□ -0.27
UPF1-203ENST00000594504 EZH1Q92800 747 aaPredicted RBP13.35□□□□□ -0.27
UPF1-203ENST00000594504 HPDLQ96IR7 371 aa13.35□□□□□ -0.27
UPF1-203ENST00000594504 MYRFLQ96LU7 910 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms