RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 NCANO14594 1321 aa26.54■■□□□ 1.84
SHMT1-207ENST00000580002 H0YGN5 161 aa26.53■■□□□ 1.84
SHMT1-207ENST00000580002 NOP2P46087 812 aaKnown RBP26.53■■□□□ 1.84
SHMT1-207ENST00000580002 NAP1L1P55209 391 aaKnown RBP26.53■■□□□ 1.84
SHMT1-207ENST00000580002 MAP3K7CLP57077 242 aa26.53■■□□□ 1.84
SHMT1-207ENST00000580002 GNG11P61952 73 aa26.53■■□□□ 1.84
SHMT1-207ENST00000580002 TSPY1Q01534 308 aa26.53■■□□□ 1.84
SHMT1-207ENST00000580002 USP41Q3LFD5 358 aa26.53■■□□□ 1.84
SHMT1-207ENST00000580002 CLEC20AQ6ZU45 233 aa26.53■■□□□ 1.84
SHMT1-207ENST00000580002 SLC35F6Q8N357 371 aa26.53■■□□□ 1.84
SHMT1-207ENST00000580002 KLHL23Q8NBE8 558 aa26.53■■□□□ 1.84
SHMT1-207ENST00000580002 TSGA10Q9BZW7 698 aa26.53■■□□□ 1.84
SHMT1-207ENST00000580002 GOLGA6L9A6NEM1 432 aa26.53■■□□□ 1.84
SHMT1-207ENST00000580002 FGF18O76093 207 aa26.53■■□□□ 1.84
SHMT1-207ENST00000580002 PLCB3Q01970 1234 aa26.53■■□□□ 1.84
SHMT1-207ENST00000580002 BST2Q10589 180 aaKnown RBP26.53■■□□□ 1.84
SHMT1-207ENST00000580002 PTPROQ16827 1216 aa26.53■■□□□ 1.84
SHMT1-207ENST00000580002 SYT10Q6XYQ8 523 aa26.53■■□□□ 1.84
SHMT1-207ENST00000580002 PIWIL1Q96J94 861 aaKnown RBP26.53■■□□□ 1.84
SHMT1-207ENST00000580002 MTIF3Q9H2K0 278 aaKnown RBP26.53■■□□□ 1.84
SHMT1-207ENST00000580002 CHD7Q9P2D1 2997 aa26.52■■□□□ 1.84
SHMT1-207ENST00000580002 LINC01553A4QN01 128 aa26.52■■□□□ 1.84
SHMT1-207ENST00000580002 E5RJQ4 531 aa26.52■■□□□ 1.84
SHMT1-207ENST00000580002 AP1G2O75843 785 aa26.52■■□□□ 1.84
SHMT1-207ENST00000580002 SOD2P04179 222 aa26.52■■□□□ 1.84
SHMT1-207ENST00000580002 TNNT1P13805 278 aa26.52■■□□□ 1.84
SHMT1-207ENST00000580002 CYP2F1P24903 491 aa26.52■■□□□ 1.84
SHMT1-207ENST00000580002 DNAJB2P25686 324 aa26.52■■□□□ 1.84
SHMT1-207ENST00000580002 C1QBPQ07021 282 aaKnown RBP26.52■■□□□ 1.84
SHMT1-207ENST00000580002 ZNF280DQ6N043 979 aa26.52■■□□□ 1.84
SHMT1-207ENST00000580002 CPNE8Q86YQ8 564 aa26.52■■□□□ 1.84
SHMT1-207ENST00000580002 VPS52Q8N1B4 723 aa26.52■■□□□ 1.84
SHMT1-207ENST00000580002 TTC9BQ8N6N2 239 aa26.52■■□□□ 1.84
SHMT1-207ENST00000580002 RFFLQ8WZ73 363 aa26.52■■□□□ 1.84
SHMT1-207ENST00000580002 C17orf80Q9BSJ5 609 aa26.52■■□□□ 1.84
SHMT1-207ENST00000580002 NUP85Q9BW27 656 aa26.52■■□□□ 1.84
SHMT1-207ENST00000580002 CTTNBP2NLQ9P2B4 639 aa26.52■■□□□ 1.84
SHMT1-207ENST00000580002 PCDHB12Q9Y5F1 795 aa26.52■■□□□ 1.84
SHMT1-207ENST00000580002 CHD9Q3L8U1 2897 aa26.52■■□□□ 1.84
SHMT1-207ENST00000580002 TCRBV5S1A1TA0A578 114 aa26.51■■□□□ 1.83
SHMT1-207ENST00000580002 BTNL10A8MVZ5 291 aa26.51■■□□□ 1.83
SHMT1-207ENST00000580002 CSPG5O95196 566 aa26.51■■□□□ 1.83
SHMT1-207ENST00000580002 VNN2O95498 520 aa26.51■■□□□ 1.83
SHMT1-207ENST00000580002 BCAT1P54687 386 aa26.51■■□□□ 1.83
SHMT1-207ENST00000580002 DDX53Q86TM3 631 aaKnown RBP26.51■■□□□ 1.83
SHMT1-207ENST00000580002 XYLT1Q86Y38 959 aa26.51■■□□□ 1.83
SHMT1-207ENST00000580002 ATAD1Q8NBU5 361 aa26.51■■□□□ 1.83
SHMT1-207ENST00000580002 NDRG1Q92597 394 aaKnown RBP26.51■■□□□ 1.83
SHMT1-207ENST00000580002 GDF15Q99988 308 aa26.51■■□□□ 1.83
SHMT1-207ENST00000580002 SLC4A5Q9BY07 1137 aa26.51■■□□□ 1.83
SHMT1-207ENST00000580002 MTUS1Q9ULD2 1270 aa26.51■■□□□ 1.83
SHMT1-207ENST00000580002 TNRC18O15417 2968 aaPredicted RBP26.51■■□□□ 1.83
SHMT1-207ENST00000580002 GOLGA8SH3BPF8 625 aa26.51■■□□□ 1.83
SHMT1-207ENST00000580002 NPR3P17342 541 aa26.51■■□□□ 1.83
SHMT1-207ENST00000580002 PBX2P40425 430 aa26.51■■□□□ 1.83
SHMT1-207ENST00000580002 GPRIN1Q7Z2K8 1008 aa26.51■■□□□ 1.83
SHMT1-207ENST00000580002 PIGZQ86VD9 579 aa26.51■■□□□ 1.83
SHMT1-207ENST00000580002 CLEC4CQ8WTT0 213 aa26.51■■□□□ 1.83
SHMT1-207ENST00000580002 C18orf8Q96DM3 657 aa26.51■■□□□ 1.83
SHMT1-207ENST00000580002 UBE2OQ9C0C9 1292 aaKnown RBP26.51■■□□□ 1.83
SHMT1-207ENST00000580002 ALG13Q9NP73 1137 aaKnown RBP26.51■■□□□ 1.83
SHMT1-207ENST00000580002 CDY1Q9Y6F8 540 aa26.51■■□□□ 1.83
SHMT1-207ENST00000580002 ATP8B3O60423 1300 aa26.5■■□□□ 1.83
SHMT1-207ENST00000580002 GRID2IPA4D2P6 1211 aa26.5■■□□□ 1.83
SHMT1-207ENST00000580002 FAM200BP0CF97 657 aa26.5■■□□□ 1.83
SHMT1-207ENST00000580002 MAMLD1Q13495 774 aa26.5■■□□□ 1.83
SHMT1-207ENST00000580002 PSMD5Q16401 504 aa26.5■■□□□ 1.83
SHMT1-207ENST00000580002 KIAA1841Q6NSI8 718 aa26.5■■□□□ 1.83
SHMT1-207ENST00000580002 RNF19BQ6ZMZ0 732 aa26.5■■□□□ 1.83
SHMT1-207ENST00000580002 ANKS3Q6ZW76 656 aa26.5■■□□□ 1.83
SHMT1-207ENST00000580002 SCUBE3Q8IX30 993 aa26.5■■□□□ 1.83
SHMT1-207ENST00000580002 STKLD1Q8NE28 680 aa26.5■■□□□ 1.83
SHMT1-207ENST00000580002 TPCN2Q8NHX9 752 aa26.5■■□□□ 1.83
SHMT1-207ENST00000580002 HERC2P3Q9BVR0 1158 aa26.5■■□□□ 1.83
SHMT1-207ENST00000580002 CRISPLD1Q9H336 500 aa26.5■■□□□ 1.83
SHMT1-207ENST00000580002 ABI2Q9NYB9 513 aaPredicted RBP26.5■■□□□ 1.83
SHMT1-207ENST00000580002 DNAI1Q9UI46 699 aa26.5■■□□□ 1.83
SHMT1-207ENST00000580002 HYOU1Q9Y4L1 999 aa26.5■■□□□ 1.83
SHMT1-207ENST00000580002 KIF5CO60282 957 aa26.49■■□□□ 1.83
SHMT1-207ENST00000580002 PALMO75781 387 aa26.49■■□□□ 1.83
SHMT1-207ENST00000580002 SOAT2O75908 522 aa26.49■■□□□ 1.83
SHMT1-207ENST00000580002 LCP1P13796 627 aa26.49■■□□□ 1.83
SHMT1-207ENST00000580002 GABRB2P47870 512 aa26.49■■□□□ 1.83
SHMT1-207ENST00000580002 GPR15P49685 360 aa26.49■■□□□ 1.83
SHMT1-207ENST00000580002 NDUFV1P49821 464 aa26.49■■□□□ 1.83
SHMT1-207ENST00000580002 ETF1P62495 437 aaKnown RBP26.49■■□□□ 1.83
SHMT1-207ENST00000580002 PLEKHA7Q6IQ23 1121 aa26.49■■□□□ 1.83
SHMT1-207ENST00000580002 FBXO22Q8NEZ5 403 aa26.49■■□□□ 1.83
SHMT1-207ENST00000580002 PIK3R5Q8WYR1 880 aa26.49■■□□□ 1.83
SHMT1-207ENST00000580002 ZNF592Q92610 1267 aa26.49■■□□□ 1.83
SHMT1-207ENST00000580002 VCPIP1Q96JH7 1222 aa26.49■■□□□ 1.83
SHMT1-207ENST00000580002 CLSTN3Q9BQT9 956 aa26.49■■□□□ 1.83
SHMT1-207ENST00000580002 DNAI2Q9GZS0 605 aa26.49■■□□□ 1.83
SHMT1-207ENST00000580002 MIS12Q9H081 205 aa26.49■■□□□ 1.83
SHMT1-207ENST00000580002 SYNCQ9H7C4 482 aa26.49■■□□□ 1.83
SHMT1-207ENST00000580002 AAASQ9NRG9 546 aa26.49■■□□□ 1.83
SHMT1-207ENST00000580002 YBX2Q9Y2T7 364 aaKnown RBP26.49■■□□□ 1.83
SHMT1-207ENST00000580002 A0A0A6YYK5 440 aaPredicted RBP26.48■■□□□ 1.83
SHMT1-207ENST00000580002 OR6C75A6NL08 312 aa26.48■■□□□ 1.83
SHMT1-207ENST00000580002 CA3P07451 260 aa26.48■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms