RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 OR4Q2P0C623 313 aa17.07■□□□□ 0.32
SS18-211ENST00000578954 TMEM253P0C7T8 217 aa17.07■□□□□ 0.32
SS18-211ENST00000578954 FAM200BP0CF97 657 aa17.07■□□□□ 0.32
SS18-211ENST00000578954 ARHGAP25P42331 645 aa17.07■□□□□ 0.32
SS18-211ENST00000578954 GABRB2P47870 512 aa17.07■□□□□ 0.32
SS18-211ENST00000578954 PDE4CQ08493 712 aa17.07■□□□□ 0.32
SS18-211ENST00000578954 PDCLQ13371 301 aa17.07■□□□□ 0.32
SS18-211ENST00000578954 TCEAL1Q15170 157 aa17.07■□□□□ 0.32
SS18-211ENST00000578954 PTPN14Q15678 1187 aa17.07■□□□□ 0.32
SS18-211ENST00000578954 PTPN20Q4JDL3 420 aa17.07■□□□□ 0.32
SS18-211ENST00000578954 CLEC20AQ6ZU45 233 aa17.07■□□□□ 0.32
SS18-211ENST00000578954 FBXO22Q8NEZ5 403 aa17.07■□□□□ 0.32
SS18-211ENST00000578954 UBA3Q8TBC4 463 aa17.07■□□□□ 0.32
SS18-211ENST00000578954 SPPL3Q8TCT6 385 aa17.07■□□□□ 0.32
SS18-211ENST00000578954 C2orf15Q8WU43 125 aaKnown RBP17.07■□□□□ 0.32
SS18-211ENST00000578954 CPA5Q8WXQ8 436 aa17.07■□□□□ 0.32
SS18-211ENST00000578954 TRIM11Q96F44 468 aa17.07■□□□□ 0.32
SS18-211ENST00000578954 CLSTN3Q9BQT9 956 aa17.07■□□□□ 0.32
SS18-211ENST00000578954 C11orf84Q9BUA3 381 aaPredicted RBP17.07■□□□□ 0.32
SS18-211ENST00000578954 SLC4A5Q9BY07 1137 aa17.07■□□□□ 0.32
SS18-211ENST00000578954 UBXN6Q9BZV1 441 aa17.07■□□□□ 0.32
SS18-211ENST00000578954 KRT82Q9NSB4 513 aa17.07■□□□□ 0.32
SS18-211ENST00000578954 NCANO14594 1321 aa17.06■□□□□ 0.32
SS18-211ENST00000578954 GOLGA6L9A6NEM1 432 aa17.06■□□□□ 0.32
SS18-211ENST00000578954 USP27XA6NNY8 438 aa17.06■□□□□ 0.32
SS18-211ENST00000578954 TMCO5BA8MYB1 307 aa17.06■□□□□ 0.32
SS18-211ENST00000578954 MYBL1P10243 752 aa17.06■□□□□ 0.32
SS18-211ENST00000578954 PBX2P40425 430 aa17.06■□□□□ 0.32
SS18-211ENST00000578954 MAGEA11P43364 429 aa17.06■□□□□ 0.32
SS18-211ENST00000578954 ROR1Q01973 937 aa17.06■□□□□ 0.32
SS18-211ENST00000578954 SLC39A12Q504Y0 691 aa17.06■□□□□ 0.32
SS18-211ENST00000578954 SPRED2Q7Z698 418 aa17.06■□□□□ 0.32
SS18-211ENST00000578954 KIAA1328Q86T90 577 aa17.06■□□□□ 0.32
SS18-211ENST00000578954 DNAAF5Q86Y56 855 aa17.06■□□□□ 0.32
SS18-211ENST00000578954 SPATA2LQ8IUW3 424 aaPredicted RBP17.06■□□□□ 0.32
SS18-211ENST00000578954 ZMIZ2Q8NF64 920 aa17.06■□□□□ 0.32
SS18-211ENST00000578954 SPPL2BQ8TCT7 592 aa17.06■□□□□ 0.32
SS18-211ENST00000578954 PPP1R13BQ96KQ4 1090 aa17.06■□□□□ 0.32
SS18-211ENST00000578954 HSFY1Q96LI6 401 aa17.06■□□□□ 0.32
SS18-211ENST00000578954 NOX5Q96PH1 765 aa17.06■□□□□ 0.32
SS18-211ENST00000578954 SMOQ99835 787 aa17.06■□□□□ 0.32
SS18-211ENST00000578954 MED10Q9BTT4 135 aa17.06■□□□□ 0.32
SS18-211ENST00000578954 TSGA10Q9BZW7 698 aa17.06■□□□□ 0.32
SS18-211ENST00000578954 LACRTQ9GZZ8 138 aa17.06■□□□□ 0.32
SS18-211ENST00000578954 PNPLA8Q9NP80 782 aa17.06■□□□□ 0.32
SS18-211ENST00000578954 AVENQ9NQS1 362 aaPredicted RBP17.06■□□□□ 0.32
SS18-211ENST00000578954 MRPL17Q9NRX2 175 aaKnown RBP17.06■□□□□ 0.32
SS18-211ENST00000578954 MSRAQ9UJ68 235 aa17.06■□□□□ 0.32
SS18-211ENST00000578954 CDY1Q9Y6F8 540 aa17.06■□□□□ 0.32
SS18-211ENST00000578954 A0A0A6YYK5 440 aaPredicted RBP17.05■□□□□ 0.32
SS18-211ENST00000578954 A0A0U1RQJ8 604 aa17.05■□□□□ 0.32
SS18-211ENST00000578954 MTMR11A4FU01 709 aa17.05■□□□□ 0.32
SS18-211ENST00000578954 TULP2O00295 520 aa17.05■□□□□ 0.32
SS18-211ENST00000578954 FSCN2O14926 492 aa17.05■□□□□ 0.32
SS18-211ENST00000578954 ADAM12O43184 909 aa17.05■□□□□ 0.32
SS18-211ENST00000578954 AP1G2O75843 785 aa17.05■□□□□ 0.32
SS18-211ENST00000578954 VNN2O95498 520 aa17.05■□□□□ 0.32
SS18-211ENST00000578954 CYP1A2P05177 515 aa17.05■□□□□ 0.32
SS18-211ENST00000578954 CALB1P05937 261 aa17.05■□□□□ 0.32
SS18-211ENST00000578954 CPB1P15086 417 aa17.05■□□□□ 0.32
SS18-211ENST00000578954 KIF5AQ12840 1032 aa17.05■□□□□ 0.32
SS18-211ENST00000578954 RAB33AQ14088 237 aa17.05■□□□□ 0.32
SS18-211ENST00000578954 PMF1Q6P1K2 205 aa17.05■□□□□ 0.32
SS18-211ENST00000578954 VSTM1Q6UX27 236 aa17.05■□□□□ 0.32
SS18-211ENST00000578954 TMEM110Q86TL2 294 aa17.05■□□□□ 0.32
SS18-211ENST00000578954 ERICH1Q86X53 443 aa17.05■□□□□ 0.32
SS18-211ENST00000578954 MSANTD4Q8NCY6 345 aa17.05■□□□□ 0.32
SS18-211ENST00000578954 ATRIPQ8WXE1 791 aa17.05■□□□□ 0.32
SS18-211ENST00000578954 CTNNBL1Q8WYA6 563 aaPredicted RBP17.05■□□□□ 0.32
SS18-211ENST00000578954 KCTD13Q8WZ19 329 aa17.05■□□□□ 0.32
SS18-211ENST00000578954 CPXM1Q96SM3 734 aa17.05■□□□□ 0.32
SS18-211ENST00000578954 MIS12Q9H081 205 aa17.05■□□□□ 0.32
SS18-211ENST00000578954 THAP2Q9H0W7 228 aa17.05■□□□□ 0.32
SS18-211ENST00000578954 TMEM30AQ9NV96 361 aa17.05■□□□□ 0.32
SS18-211ENST00000578954 ADAM22Q9P0K1 906 aa17.05■□□□□ 0.32
SS18-211ENST00000578954 HSFX1Q9UBD0 423 aa17.05■□□□□ 0.32
SS18-211ENST00000578954 PCDHB5Q9Y5E4 795 aa17.05■□□□□ 0.32
SS18-211ENST00000578954 PATJQ8NI35 1801 aa17.05■□□□□ 0.32
SS18-211ENST00000578954 TCRBV5S1A1TA0A578 114 aa17.04■□□□□ 0.32
SS18-211ENST00000578954 WDR27A2RRH5 827 aa17.04■□□□□ 0.32
SS18-211ENST00000578954 HHLA1C9JL84 531 aa17.04■□□□□ 0.32
SS18-211ENST00000578954 H3BNC9 293 aa17.04■□□□□ 0.32
SS18-211ENST00000578954 BEST1O76090 585 aa17.04■□□□□ 0.32
SS18-211ENST00000578954 ABLIM3O94929 683 aa17.04■□□□□ 0.32
SS18-211ENST00000578954 BDNFP23560 247 aa17.04■□□□□ 0.32
SS18-211ENST00000578954 DNAJB1P25685 340 aa17.04■□□□□ 0.32
SS18-211ENST00000578954 ACADSBP45954 432 aa17.04■□□□□ 0.32
SS18-211ENST00000578954 CACNA2D1P54289 1103 aa17.04■□□□□ 0.32
SS18-211ENST00000578954 SLC8A3P57103 927 aa17.04■□□□□ 0.32
SS18-211ENST00000578954 GPC5P78333 572 aa17.04■□□□□ 0.32
SS18-211ENST00000578954 SMAD3P84022 425 aaKnown RBP17.04■□□□□ 0.32
SS18-211ENST00000578954 TPGS2Q68CL5 300 aa17.04■□□□□ 0.32
SS18-211ENST00000578954 MMS22LQ6ZRQ5 1243 aa17.04■□□□□ 0.32
SS18-211ENST00000578954 PIGZQ86VD9 579 aa17.04■□□□□ 0.32
SS18-211ENST00000578954 IPO4Q8TEX9 1081 aaKnown RBP17.04■□□□□ 0.32
SS18-211ENST00000578954 POF1BQ8WVV4 589 aa17.04■□□□□ 0.32
SS18-211ENST00000578954 RFFLQ8WZ73 363 aa17.04■□□□□ 0.32
SS18-211ENST00000578954 C11orf70Q9BRQ4 267 aa17.04■□□□□ 0.32
SS18-211ENST00000578954 NKX2-4Q9H2Z4 354 aa17.04■□□□□ 0.32
SS18-211ENST00000578954 ALG13Q9NP73 1137 aaKnown RBP17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms