RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 DACH1Q9UI36 760 aa20.74■□□□□ 0.91
SS18-209ENST00000578595 RWDD2AQ9UIY3 292 aa20.74■□□□□ 0.91
SS18-209ENST00000578595 KIF26AQ9ULI4 1882 aaPredicted RBP20.74■□□□□ 0.91
SS18-209ENST00000578595 PATJQ8NI35 1801 aa20.74■□□□□ 0.91
SS18-209ENST00000578595 KMT2EQ8IZD2 1858 aa20.73■□□□□ 0.91
SS18-209ENST00000578595 F8VP50 259 aa20.73■□□□□ 0.91
SS18-209ENST00000578595 STK25O00506 426 aa20.73■□□□□ 0.91
SS18-209ENST00000578595 DPYSL4O14531 572 aa20.73■□□□□ 0.91
SS18-209ENST00000578595 CCDC130P13994 396 aa20.73■□□□□ 0.91
SS18-209ENST00000578595 FMO5P49326 533 aa20.73■□□□□ 0.91
SS18-209ENST00000578595 CETN1Q12798 172 aa20.73■□□□□ 0.91
SS18-209ENST00000578595 GRM2Q14416 872 aa20.73■□□□□ 0.91
SS18-209ENST00000578595 TANGO2Q6ICL3 276 aa20.73■□□□□ 0.91
SS18-209ENST00000578595 FAM35AQ86V20 835 aa20.73■□□□□ 0.91
SS18-209ENST00000578595 TTC16Q8NEE8 873 aa20.73■□□□□ 0.91
SS18-209ENST00000578595 FLCNQ8NFG4 579 aa20.73■□□□□ 0.91
SS18-209ENST00000578595 GPT2Q8TD30 523 aa20.73■□□□□ 0.91
SS18-209ENST00000578595 MRPS31Q92665 395 aaKnown RBP20.73■□□□□ 0.91
SS18-209ENST00000578595 B3GNT5Q9BYG0 378 aa20.73■□□□□ 0.91
SS18-209ENST00000578595 BCO2Q9BYV7 579 aa20.73■□□□□ 0.91
SS18-209ENST00000578595 TRPC7Q9HCX4 862 aa20.73■□□□□ 0.91
SS18-209ENST00000578595 KRT82Q9NSB4 513 aa20.73■□□□□ 0.91
SS18-209ENST00000578595 ZNF318Q5VUA4 2279 aa20.73■□□□□ 0.91
SS18-209ENST00000578595 PDGFBP01127 241 aaPredicted RBP20.72■□□□□ 0.91
SS18-209ENST00000578595 ADORA2BP29275 332 aa20.72■□□□□ 0.91
SS18-209ENST00000578595 VIPR2P41587 438 aa20.72■□□□□ 0.91
SS18-209ENST00000578595 NLRP12P59046 1061 aa20.72■□□□□ 0.91
SS18-209ENST00000578595 DPCR1Q3MIW9 517 aa20.72■□□□□ 0.91
SS18-209ENST00000578595 ZNF394Q53GI3 561 aa20.72■□□□□ 0.91
SS18-209ENST00000578595 FOXR2Q6PJQ5 311 aa20.72■□□□□ 0.91
SS18-209ENST00000578595 UNC93AQ86WB7 457 aa20.72■□□□□ 0.91
SS18-209ENST00000578595 YAF2Q8IY57 180 aa20.72■□□□□ 0.91
SS18-209ENST00000578595 SIX5Q8N196 739 aa20.72■□□□□ 0.91
SS18-209ENST00000578595 ELSPBP1Q96BH3 223 aa20.72■□□□□ 0.91
SS18-209ENST00000578595 ASIC4Q96FT7 647 aa20.72■□□□□ 0.91
SS18-209ENST00000578595 NT5C1AQ9BXI3 368 aa20.72■□□□□ 0.91
SS18-209ENST00000578595 IL21Q9HBE4 155 aa20.72■□□□□ 0.91
SS18-209ENST00000578595 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.72■□□□□ 0.91
SS18-209ENST00000578595 ECI2O75521 394 aa20.71■□□□□ 0.91
SS18-209ENST00000578595 AP1G2O75843 785 aa20.71■□□□□ 0.91
SS18-209ENST00000578595 NOL4O94818 638 aa20.71■□□□□ 0.91
SS18-209ENST00000578595 HMGA1P17096 107 aaKnown RBP20.71■□□□□ 0.91
SS18-209ENST00000578595 GPC5P78333 572 aa20.71■□□□□ 0.91
SS18-209ENST00000578595 POTEHQ6S545 545 aa20.71■□□□□ 0.91
SS18-209ENST00000578595 DENND5BQ6ZUT9 1274 aa20.71■□□□□ 0.91
SS18-209ENST00000578595 SLC2A14Q8TDB8 520 aa20.71■□□□□ 0.91
SS18-209ENST00000578595 TATDN2Q93075 761 aa20.71■□□□□ 0.91
SS18-209ENST00000578595 JAKMIP2Q96AA8 810 aa20.71■□□□□ 0.91
SS18-209ENST00000578595 SMARCD1Q96GM5 515 aa20.71■□□□□ 0.91
SS18-209ENST00000578595 CNOT6LQ96LI5 555 aaKnown RBP20.71■□□□□ 0.91
SS18-209ENST00000578595 ARID3AQ99856 593 aa20.71■□□□□ 0.91
SS18-209ENST00000578595 PLA2G2FQ9BZM2 168 aa20.71■□□□□ 0.91
SS18-209ENST00000578595 TASP1Q9H6P5 420 aa20.71■□□□□ 0.91
SS18-209ENST00000578595 BRD9Q9H8M2 597 aa20.71■□□□□ 0.91
SS18-209ENST00000578595 HCN4Q9Y3Q4 1203 aa20.71■□□□□ 0.91
SS18-209ENST00000578595 MBD3O95983 291 aa20.7■□□□□ 0.9
SS18-209ENST00000578595 COL9A1P20849 921 aa20.7■□□□□ 0.9
SS18-209ENST00000578595 FCARP24071 287 aa20.7■□□□□ 0.9
SS18-209ENST00000578595 AVPR1AP37288 418 aa20.7■□□□□ 0.9
SS18-209ENST00000578595 CACNA2D1P54289 1103 aa20.7■□□□□ 0.9
SS18-209ENST00000578595 INCA1Q0VD86 236 aa20.7■□□□□ 0.9
SS18-209ENST00000578595 ARID3BQ8IVW6 561 aaPredicted RBP20.7■□□□□ 0.9
SS18-209ENST00000578595 FBXL6Q8N531 539 aa20.7■□□□□ 0.9
SS18-209ENST00000578595 MAB21L3Q8N8X9 362 aa20.7■□□□□ 0.9
SS18-209ENST00000578595 TRMT2BQ96GJ1 504 aaKnown RBP20.7■□□□□ 0.9
SS18-209ENST00000578595 SPATA17Q96L03 361 aa20.7■□□□□ 0.9
SS18-209ENST00000578595 TWNKQ96RR1 684 aa20.7■□□□□ 0.9
SS18-209ENST00000578595 DMAP1Q9NPF5 467 aaPredicted RBP20.7■□□□□ 0.9
SS18-209ENST00000578595 EHD2Q9NZN4 543 aa20.7■□□□□ 0.9
SS18-209ENST00000578595 HEPACAM2A8MVW5 462 aa20.69■□□□□ 0.9
SS18-209ENST00000578595 ABL1P00519 1130 aa20.69■□□□□ 0.9
SS18-209ENST00000578595 AFPP02771 609 aaKnown RBP20.69■□□□□ 0.9
SS18-209ENST00000578595 MTIF2P46199 727 aaKnown RBP20.69■□□□□ 0.9
SS18-209ENST00000578595 YWHAEP62258 255 aaKnown RBP20.69■□□□□ 0.9
SS18-209ENST00000578595 KCNH2Q12809 1159 aa20.69■□□□□ 0.9
SS18-209ENST00000578595 TRIM59Q8IWR1 403 aa20.69■□□□□ 0.9
SS18-209ENST00000578595 TTC39CQ8N584 583 aa20.69■□□□□ 0.9
SS18-209ENST00000578595 C12orf29Q8N999 325 aa20.69■□□□□ 0.9
SS18-209ENST00000578595 C8orf48Q96LL4 319 aa20.69■□□□□ 0.9
SS18-209ENST00000578595 NT5C1BQ96P26 610 aa20.69■□□□□ 0.9
SS18-209ENST00000578595 TRMT61BQ9BVS5 477 aaKnown RBP20.69■□□□□ 0.9
SS18-209ENST00000578595 SMG9Q9H0W8 520 aaKnown RBP20.69■□□□□ 0.9
SS18-209ENST00000578595 ARHGEF3Q9NR81 526 aa20.69■□□□□ 0.9
SS18-209ENST00000578595 CISHQ9NSE2 258 aa20.69■□□□□ 0.9
SS18-209ENST00000578595 CILPO75339 1184 aa20.68■□□□□ 0.9
SS18-209ENST00000578595 F11P03951 625 aa20.68■□□□□ 0.9
SS18-209ENST00000578595 FAM200BP0CF97 657 aa20.68■□□□□ 0.9
SS18-209ENST00000578595 PSMC3P17980 439 aa20.68■□□□□ 0.9
SS18-209ENST00000578595 GDI1P31150 447 aa20.68■□□□□ 0.9
SS18-209ENST00000578595 PFKPQ01813 784 aa20.68■□□□□ 0.9
SS18-209ENST00000578595 CUL2Q13617 745 aa20.68■□□□□ 0.9
SS18-209ENST00000578595 TXNDC8Q6A555 127 aa20.68■□□□□ 0.9
SS18-209ENST00000578595 VITQ6UXI7 678 aa20.68■□□□□ 0.9
SS18-209ENST00000578595 FUKQ8N0W3 1084 aa20.68■□□□□ 0.9
SS18-209ENST00000578595 PPM1KQ8N3J5 372 aa20.68■□□□□ 0.9
SS18-209ENST00000578595 DEPDC1BQ8WUY9 529 aa20.68■□□□□ 0.9
SS18-209ENST00000578595 E2F7Q96AV8 911 aa20.68■□□□□ 0.9
SS18-209ENST00000578595 HEXIM2Q96MH2 286 aaKnown RBP20.68■□□□□ 0.9
SS18-209ENST00000578595 WNT16Q9UBV4 365 aa20.68■□□□□ 0.9
SS18-209ENST00000578595 RAPGEFL1Q9UHV5 662 aa20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms