RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 ACACAQ13085 2346 aa11.93□□□□□ -0.5
VPS53-207ENST00000570510 A0A1W2PQD8 194 aa11.93□□□□□ -0.5
VPS53-207ENST00000570510 GOLGA8CPA6NN73 597 aa11.93□□□□□ -0.5
VPS53-207ENST00000570510 ABLIM1O14639 778 aa11.93□□□□□ -0.5
VPS53-207ENST00000570510 DTNBO60941 627 aa11.93□□□□□ -0.5
VPS53-207ENST00000570510 OR52Z1P0C646 297 aa11.93□□□□□ -0.5
VPS53-207ENST00000570510 HDCP19113 662 aa11.93□□□□□ -0.5
VPS53-207ENST00000570510 OPRD1P41143 372 aa11.93□□□□□ -0.5
VPS53-207ENST00000570510 FOSBP53539 338 aa11.93□□□□□ -0.5
VPS53-207ENST00000570510 MCL1Q07820 350 aa11.93□□□□□ -0.5
VPS53-207ENST00000570510 USP4Q13107 963 aa11.93□□□□□ -0.5
VPS53-207ENST00000570510 RESTQ13127 1097 aa11.93□□□□□ -0.5
VPS53-207ENST00000570510 NFE2Q16621 373 aaPredicted RBP11.93□□□□□ -0.5
VPS53-207ENST00000570510 SDHAF4Q5VUM1 108 aa11.93□□□□□ -0.5
VPS53-207ENST00000570510 ZPBP2Q6X784 338 aa11.93□□□□□ -0.5
VPS53-207ENST00000570510 LRRC69Q6ZNQ3 347 aa11.93□□□□□ -0.5
VPS53-207ENST00000570510 TAS1R3Q7RTX0 852 aa11.93□□□□□ -0.5
VPS53-207ENST00000570510 TRMT11Q7Z4G4 463 aaKnown RBP11.93□□□□□ -0.5
VPS53-207ENST00000570510 SCUBE3Q8IX30 993 aa11.93□□□□□ -0.5
VPS53-207ENST00000570510 DIS3L2Q8IYB7 885 aaKnown RBP11.93□□□□□ -0.5
VPS53-207ENST00000570510 GALNT15Q8N3T1 639 aa11.93□□□□□ -0.5
VPS53-207ENST00000570510 ARL14EPQ8N8R7 260 aaPredicted RBP11.93□□□□□ -0.5
VPS53-207ENST00000570510 KRI1Q8N9T8 703 aaKnown RBP11.93□□□□□ -0.5
VPS53-207ENST00000570510 TRIML1Q8N9V2 468 aa11.93□□□□□ -0.5
VPS53-207ENST00000570510 PIP4K2CQ8TBX8 421 aa11.93□□□□□ -0.5
VPS53-207ENST00000570510 TNFRSF25Q93038 417 aa11.93□□□□□ -0.5
VPS53-207ENST00000570510 HSPA12BQ96MM6 686 aa11.93□□□□□ -0.5
VPS53-207ENST00000570510 DKK4Q9UBT3 224 aa11.93□□□□□ -0.5
VPS53-207ENST00000570510 LRWD1Q9UFC0 647 aa11.93□□□□□ -0.5
VPS53-207ENST00000570510 CITO14578 2027 aa11.93□□□□□ -0.5
VPS53-207ENST00000570510 GON4LQ3T8J9 2241 aa11.92□□□□□ -0.5
VPS53-207ENST00000570510 ASXL3Q9C0F0 2248 aa11.92□□□□□ -0.5
VPS53-207ENST00000570510 TRABD2BA6NFA1 517 aa11.92□□□□□ -0.5
VPS53-207ENST00000570510 SFI1A8K8P3 1242 aa11.92□□□□□ -0.5
VPS53-207ENST00000570510 PPEF2O14830 753 aa11.92□□□□□ -0.5
VPS53-207ENST00000570510 PFKFB2O60825 505 aa11.92□□□□□ -0.5
VPS53-207ENST00000570510 ZNF217O75362 1048 aa11.92□□□□□ -0.5
VPS53-207ENST00000570510 KAT7O95251 611 aa11.92□□□□□ -0.5
VPS53-207ENST00000570510 CYP11A1P05108 521 aa11.92□□□□□ -0.5
VPS53-207ENST00000570510 PLA2G2AP14555 144 aa11.92□□□□□ -0.5
VPS53-207ENST00000570510 HNRNPLP14866 589 aaKnown RBP eCLIP11.92□□□□□ -0.5
VPS53-207ENST00000570510 GPR15P49685 360 aa11.92□□□□□ -0.5
VPS53-207ENST00000570510 LIG4P49917 911 aa11.92□□□□□ -0.5
VPS53-207ENST00000570510 SAFBQ15424 915 aaKnown RBP eCLIP11.92□□□□□ -0.5
VPS53-207ENST00000570510 ZBTB6Q15916 424 aa11.92□□□□□ -0.5
VPS53-207ENST00000570510 DDR2Q16832 855 aa11.92□□□□□ -0.5
VPS53-207ENST00000570510 C8orf34Q49A92 452 aa11.92□□□□□ -0.5
VPS53-207ENST00000570510 WDR45BQ5MNZ6 344 aa11.92□□□□□ -0.5
VPS53-207ENST00000570510 SPATA1Q5VX52 437 aa11.92□□□□□ -0.5
VPS53-207ENST00000570510 C9orf57Q5W0N0 161 aa11.92□□□□□ -0.5
VPS53-207ENST00000570510 SLCO6A1Q86UG4 719 aa11.92□□□□□ -0.5
VPS53-207ENST00000570510 LRRTM3Q86VH5 581 aa11.92□□□□□ -0.5
VPS53-207ENST00000570510 CD302Q8IX05 232 aa11.92□□□□□ -0.5
VPS53-207ENST00000570510 STKLD1Q8NE28 680 aa11.92□□□□□ -0.5
VPS53-207ENST00000570510 CRELD1Q96HD1 420 aa11.92□□□□□ -0.5
VPS53-207ENST00000570510 SLC22A12Q96S37 553 aa11.92□□□□□ -0.5
VPS53-207ENST00000570510 RAB34Q9BZG1 259 aa11.92□□□□□ -0.5
VPS53-207ENST00000570510 ZDHHC5Q9C0B5 715 aa11.92□□□□□ -0.5
VPS53-207ENST00000570510 ARHGEF4Q9NR80 690 aa11.92□□□□□ -0.5
VPS53-207ENST00000570510 KIAA1522Q9P206 1035 aaPredicted RBP11.92□□□□□ -0.5
VPS53-207ENST00000570510 RAI2Q9Y5P3 530 aa11.92□□□□□ -0.5
VPS53-207ENST00000570510 ZNF638Q14966 1978 aaKnown RBP11.92□□□□□ -0.5
VPS53-207ENST00000570510 URB1O60287 2271 aaKnown RBP11.91□□□□□ -0.5
VPS53-207ENST00000570510 CELSR3Q9NYQ7 3312 aa11.91□□□□□ -0.5
VPS53-207ENST00000570510 A0A087WV48 116 aa11.91□□□□□ -0.5
VPS53-207ENST00000570510 TBC1D3BA6NDS4 549 aa11.91□□□□□ -0.5
VPS53-207ENST00000570510 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.91□□□□□ -0.5
VPS53-207ENST00000570510 H0YCG3 227 aa11.91□□□□□ -0.5
VPS53-207ENST00000570510 WNT7AO00755 349 aa11.91□□□□□ -0.5
VPS53-207ENST00000570510 SLC9A3R1O14745 358 aaPredicted RBP11.91□□□□□ -0.5
VPS53-207ENST00000570510 ATXN7O15265 892 aaPredicted RBP11.91□□□□□ -0.5
VPS53-207ENST00000570510 ADH1CP00326 375 aa11.91□□□□□ -0.5
VPS53-207ENST00000570510 TNFSF9P41273 254 aa11.91□□□□□ -0.5
VPS53-207ENST00000570510 GRIA2P42262 883 aa11.91□□□□□ -0.5
VPS53-207ENST00000570510 TNFRSF4P43489 277 aa11.91□□□□□ -0.5
VPS53-207ENST00000570510 TAF6P49848 677 aa11.91□□□□□ -0.5
VPS53-207ENST00000570510 KDSRQ06136 332 aa11.91□□□□□ -0.5
VPS53-207ENST00000570510 RAD51AP2Q09MP3 1159 aa11.91□□□□□ -0.5
VPS53-207ENST00000570510 TMEM132DQ14C87 1099 aa11.91□□□□□ -0.5
VPS53-207ENST00000570510 ZNF174Q15697 407 aa11.91□□□□□ -0.5
VPS53-207ENST00000570510 PREPLQ4J6C6 727 aaPredicted RBP11.91□□□□□ -0.5
VPS53-207ENST00000570510 CCDC157Q569K6 752 aa11.91□□□□□ -0.5
VPS53-207ENST00000570510 EMC10Q5UCC4 262 aa11.91□□□□□ -0.5
VPS53-207ENST00000570510 WSCD1Q658N2 575 aa11.91□□□□□ -0.5
VPS53-207ENST00000570510 JADE1Q6IE81 842 aa11.91□□□□□ -0.5
VPS53-207ENST00000570510 SDE2Q6IQ49 451 aa11.91□□□□□ -0.5
VPS53-207ENST00000570510 TMPRSS7Q7RTY8 843 aa11.91□□□□□ -0.5
VPS53-207ENST00000570510 SNX29Q8TEQ0 813 aa11.91□□□□□ -0.5
VPS53-207ENST00000570510 FOXJ1Q92949 421 aa11.91□□□□□ -0.5
VPS53-207ENST00000570510 CDC6Q99741 560 aa11.91□□□□□ -0.5
VPS53-207ENST00000570510 PRDM16Q9HAZ2 1276 aa11.91□□□□□ -0.5
VPS53-207ENST00000570510 ZDHHC4Q9NPG8 344 aa11.91□□□□□ -0.5
VPS53-207ENST00000570510 CYP8B1Q9UNU6 501 aa11.91□□□□□ -0.5
VPS53-207ENST00000570510 MAST4O15021 2626 aa11.91□□□□□ -0.5
VPS53-207ENST00000570510 PI4KAP42356 2102 aa11.9□□□□□ -0.5
VPS53-207ENST00000570510 C2orf78A6NCI8 922 aa11.9□□□□□ -0.5
VPS53-207ENST00000570510 ANTXRLA6NF34 631 aa11.9□□□□□ -0.5
VPS53-207ENST00000570510 CAPN8A6NHC0 703 aa11.9□□□□□ -0.5
VPS53-207ENST00000570510 E9PMD0 336 aa11.9□□□□□ -0.5
VPS53-207ENST00000570510 J3QKU1 62 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms