RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 FAM43BQ6ZT52 329 aaPredicted RBP11.9□□□□□ -0.5
CLN3-238ENST00000569430 FAM160B2Q86V87 743 aa11.9□□□□□ -0.5
CLN3-238ENST00000569430 DEFB107AQ8IZN7 70 aa11.9□□□□□ -0.5
CLN3-238ENST00000569430 TMA16Q96EY4 203 aaKnown RBP11.9□□□□□ -0.5
CLN3-238ENST00000569430 ANKRD36BP1Q96IX9 119 aa11.9□□□□□ -0.5
CLN3-238ENST00000569430 RIT2Q99578 217 aa11.9□□□□□ -0.5
CLN3-238ENST00000569430 WDR18Q9BV38 432 aa11.9□□□□□ -0.5
CLN3-238ENST00000569430 SHOC2Q9UQ13 582 aa11.9□□□□□ -0.5
CLN3-238ENST00000569430 PCDHA10Q9Y5I2 948 aa11.9□□□□□ -0.5
CLN3-238ENST00000569430 FRMPD4Q14CM0 1322 aa11.9□□□□□ -0.51
CLN3-238ENST00000569430 ADGRA3Q8IWK6 1321 aa11.9□□□□□ -0.51
CLN3-238ENST00000569430 CCDC189A1A4V9 331 aa11.89□□□□□ -0.51
CLN3-238ENST00000569430 M0QYV0 167 aa11.89□□□□□ -0.51
CLN3-238ENST00000569430 MED7O43513 233 aa11.89□□□□□ -0.51
CLN3-238ENST00000569430 TBX10O75333 385 aa11.89□□□□□ -0.51
CLN3-238ENST00000569430 PROCP04070 461 aa11.89□□□□□ -0.51
CLN3-238ENST00000569430 CETPP11597 493 aa11.89□□□□□ -0.51
CLN3-238ENST00000569430 KRT76Q01546 638 aa11.89□□□□□ -0.51
CLN3-238ENST00000569430 RPS6KA2Q15349 733 aa11.89□□□□□ -0.51
CLN3-238ENST00000569430 TMEM259Q4ZIN3 620 aa11.89□□□□□ -0.51
CLN3-238ENST00000569430 SLFN12LQ6IEE8 588 aa11.89□□□□□ -0.51
CLN3-238ENST00000569430 CDR2LQ86X02 465 aaPredicted RBP11.89□□□□□ -0.51
CLN3-238ENST00000569430 EZH1Q92800 747 aaPredicted RBP11.89□□□□□ -0.51
CLN3-238ENST00000569430 NLRP4Q96MN2 994 aa11.89□□□□□ -0.51
CLN3-238ENST00000569430 STRIP2Q9ULQ0 834 aa11.89□□□□□ -0.51
CLN3-238ENST00000569430 ASMTLO95671 621 aa11.89□□□□□ -0.51
CLN3-238ENST00000569430 FESP07332 822 aa11.89□□□□□ -0.51
CLN3-238ENST00000569430 CYLC2Q14093 348 aaPredicted RBP11.89□□□□□ -0.51
CLN3-238ENST00000569430 R3HDM1Q15032 1099 aaKnown RBP11.89□□□□□ -0.51
CLN3-238ENST00000569430 GDPD5Q8WTR4 605 aa11.89□□□□□ -0.51
CLN3-238ENST00000569430 ASCC2Q9H1I8 757 aaPredicted RBP11.89□□□□□ -0.51
CLN3-238ENST00000569430 ASNSD1Q9NWL6 643 aa11.89□□□□□ -0.51
CLN3-238ENST00000569430 TOGARAM1Q9Y4F4 1720 aa11.89□□□□□ -0.51
CLN3-238ENST00000569430 H0YIN7 160 aa11.89□□□□□ -0.51
CLN3-238ENST00000569430 ZMPSTE24O75844 475 aa11.89□□□□□ -0.51
CLN3-238ENST00000569430 FAM200BP0CF97 657 aa11.89□□□□□ -0.51
CLN3-238ENST00000569430 ANPEPP15144 967 aa11.89□□□□□ -0.51
CLN3-238ENST00000569430 CHRNB2P17787 502 aa11.89□□□□□ -0.51
CLN3-238ENST00000569430 GLRA2P23416 452 aa11.89□□□□□ -0.51
CLN3-238ENST00000569430 RPS6KA3P51812 740 aa11.89□□□□□ -0.51
CLN3-238ENST00000569430 PHEXP78562 749 aa11.89□□□□□ -0.51
CLN3-238ENST00000569430 EME1Q96AY2 570 aa11.89□□□□□ -0.51
CLN3-238ENST00000569430 KLHL4Q9C0H6 718 aa11.89□□□□□ -0.51
CLN3-238ENST00000569430 CAAP1Q9H8G2 361 aa11.89□□□□□ -0.51
CLN3-238ENST00000569430 PCDH9Q9HC56 1237 aa11.89□□□□□ -0.51
CLN3-238ENST00000569430 ATF5Q9Y2D1 282 aaPredicted RBP11.89□□□□□ -0.51
CLN3-238ENST00000569430 GOLGA8QA0A0J9YX86 632 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 GOLGA8OA6NCC3 632 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 GOLGA8NF8WBI6 632 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 POLRMTO00411 1230 aaKnown RBP11.88□□□□□ -0.51
CLN3-238ENST00000569430 KLHL2O95198 593 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 PDGFRAP16234 1089 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 RGS7P49802 495 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 GRIK3Q13003 919 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 GSTCDQ8NEC7 633 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 PDZD8Q8NEN9 1154 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 SH3TC2Q8TF17 1288 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 RNF34Q969K3 372 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 CYP26B1Q9NR63 512 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 PIH1D1Q9NWS0 290 aaKnown RBP11.88□□□□□ -0.51
CLN3-238ENST00000569430 CHCHD3Q9NX63 227 aaKnown RBP11.88□□□□□ -0.51
CLN3-238ENST00000569430 TAS2R1Q9NYW7 299 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 E9PBE3 544 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 KLHL41O60662 606 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 LDHAP00338 332 aaKnown RBP11.88□□□□□ -0.51
CLN3-238ENST00000569430 P4HA1P13674 534 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 KCNA4P22459 653 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 NUDT2P50583 147 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 CYP24A1Q07973 514 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 BST1Q10588 318 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 C16orf46Q6P387 395 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 EGFL6Q8IUX8 553 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 ABRAQ8N0Z2 381 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 USP6NLQ92738 828 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 CMTM5Q96DZ9 223 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 AGAP3Q96P47 875 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 DHX35Q9H5Z1 703 aaKnown RBP11.88□□□□□ -0.51
CLN3-238ENST00000569430 ZMYM2Q9UBW7 1377 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 PKD1L3Q7Z443 1732 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 CYP3A7-CYP3A51PA0A087WV96 503 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 A8MXQ7 604 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 LIASO43766 372 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 CYP3A7P24462 503 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 SERPINB5P36952 375 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 ABL2P42684 1182 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 RINLQ6ZS11 566 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 SLC26A11Q86WA9 606 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 ZNF677Q86XU0 584 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 GALNT15Q8N3T1 639 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 LRRN4Q8WUT4 740 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 ZNF606Q8WXB4 792 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 SEC14L1Q92503 715 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 KCNK16Q96T55 309 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 CCT7Q99832 543 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.88□□□□□ -0.51
CLN3-238ENST00000569430 SOX13Q9UN79 622 aa11.88□□□□□ -0.51
CLN3-238ENST00000569430 AMPD1P23109 780 aa11.87□□□□□ -0.51
CLN3-238ENST00000569430 SOX11P35716 441 aa11.87□□□□□ -0.51
CLN3-238ENST00000569430 CCDC15Q0P6D6 951 aa11.87□□□□□ -0.51
CLN3-238ENST00000569430 USP4Q13107 963 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms