RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 SCN4BQ8IWT1 228 aa18.03■□□□□ 0.48
CLN3-231ENST00000568422 NETO1Q8TDF5 533 aa18.03■□□□□ 0.48
CLN3-231ENST00000568422 OSCP1Q8WVF1 389 aa18.03■□□□□ 0.48
CLN3-231ENST00000568422 KBTBD7Q8WVZ9 684 aa18.03■□□□□ 0.48
CLN3-231ENST00000568422 ATP2A3Q93084 1043 aa18.03■□□□□ 0.48
CLN3-231ENST00000568422 FAM84AQ96KN4 292 aa18.03■□□□□ 0.48
CLN3-231ENST00000568422 SYT15Q9BQS2 421 aa18.03■□□□□ 0.48
CLN3-231ENST00000568422 SEMA4GQ9NTN9 838 aa18.03■□□□□ 0.48
CLN3-231ENST00000568422 FOXD4L1Q9NU39 408 aa18.03■□□□□ 0.48
CLN3-231ENST00000568422 C2orf42Q9NWW7 574 aa18.03■□□□□ 0.48
CLN3-231ENST00000568422 DUS2Q9NX74 493 aaKnown RBP18.03■□□□□ 0.48
CLN3-231ENST00000568422 SLC8A2Q9UPR5 921 aa18.03■□□□□ 0.48
CLN3-231ENST00000568422 SPAG17Q6Q759 2223 aa18.03■□□□□ 0.48
CLN3-231ENST00000568422 CUTAO60888 179 aa18.02■□□□□ 0.48
CLN3-231ENST00000568422 ARSAP15289 507 aa18.02■□□□□ 0.48
CLN3-231ENST00000568422 KCNB1Q14721 858 aa18.02■□□□□ 0.48
CLN3-231ENST00000568422 ZNF77Q15935 545 aa18.02■□□□□ 0.48
CLN3-231ENST00000568422 SNRNP35Q16560 246 aaKnown RBP18.02■□□□□ 0.48
CLN3-231ENST00000568422 FAM26FQ5R3K3 315 aa18.02■□□□□ 0.48
CLN3-231ENST00000568422 LMBRD2Q68DH5 695 aaPredicted RBP18.02■□□□□ 0.48
CLN3-231ENST00000568422 TRAPPC11Q7Z392 1133 aa18.02■□□□□ 0.48
CLN3-231ENST00000568422 CAMKK1Q8N5S9 505 aa18.02■□□□□ 0.48
CLN3-231ENST00000568422 GLIS3Q8NEA6 775 aa18.02■□□□□ 0.48
CLN3-231ENST00000568422 HPS3Q969F9 1004 aa18.02■□□□□ 0.48
CLN3-231ENST00000568422 DHX58Q96C10 678 aa18.02■□□□□ 0.48
CLN3-231ENST00000568422 CHFRQ96EP1 664 aa18.02■□□□□ 0.48
CLN3-231ENST00000568422 LOXL4Q96JB6 756 aa18.02■□□□□ 0.48
CLN3-231ENST00000568422 FNBP1Q96RU3 617 aa18.02■□□□□ 0.48
CLN3-231ENST00000568422 P2RY13Q9BPV8 354 aa18.02■□□□□ 0.48
CLN3-231ENST00000568422 C7orf25Q9BPX7 421 aa18.02■□□□□ 0.48
CLN3-231ENST00000568422 BACH2Q9BYV9 841 aa18.02■□□□□ 0.48
CLN3-231ENST00000568422 TRPC7Q9HCX4 862 aa18.02■□□□□ 0.48
CLN3-231ENST00000568422 GCNT4Q9P109 453 aa18.02■□□□□ 0.48
CLN3-231ENST00000568422 TFIP11Q9UBB9 837 aaKnown RBP18.02■□□□□ 0.48
CLN3-231ENST00000568422 KIAA1549LQ6ZVL6 1849 aa18.01■□□□□ 0.47
CLN3-231ENST00000568422 TRIM66O15016 1216 aa18.01■□□□□ 0.47
CLN3-231ENST00000568422 HCRTO43612 131 aa18.01■□□□□ 0.47
CLN3-231ENST00000568422 ATP2C2O75185 946 aa18.01■□□□□ 0.47
CLN3-231ENST00000568422 AKAP3O75969 853 aa18.01■□□□□ 0.47
CLN3-231ENST00000568422 HDCP19113 662 aa18.01■□□□□ 0.47
CLN3-231ENST00000568422 TNNI1P19237 187 aa18.01■□□□□ 0.47
CLN3-231ENST00000568422 LMO2P25791 158 aa18.01■□□□□ 0.47
CLN3-231ENST00000568422 ANXA13P27216 316 aa18.01■□□□□ 0.47
CLN3-231ENST00000568422 GJA4P35212 333 aa18.01■□□□□ 0.47
CLN3-231ENST00000568422 PPP3CCP48454 512 aa18.01■□□□□ 0.47
CLN3-231ENST00000568422 IFNAR2P48551 515 aa18.01■□□□□ 0.47
CLN3-231ENST00000568422 GALK1P51570 392 aa18.01■□□□□ 0.47
CLN3-231ENST00000568422 USP4Q13107 963 aa18.01■□□□□ 0.47
CLN3-231ENST00000568422 NR1H3Q13133 447 aa18.01■□□□□ 0.47
CLN3-231ENST00000568422 SRSF5Q13243 272 aaKnown RBP18.01■□□□□ 0.47
CLN3-231ENST00000568422 UNC13DQ70J99 1090 aa18.01■□□□□ 0.47
CLN3-231ENST00000568422 FAM160A2Q8N612 972 aaPredicted RBP18.01■□□□□ 0.47
CLN3-231ENST00000568422 KIAA1958Q8N8K9 716 aa18.01■□□□□ 0.47
CLN3-231ENST00000568422 CCDC26Q8TAB7 109 aa18.01■□□□□ 0.47
CLN3-231ENST00000568422 RIN3Q8TB24 985 aa18.01■□□□□ 0.47
CLN3-231ENST00000568422 MYCBPAPQ8TBZ2 947 aa18.01■□□□□ 0.47
CLN3-231ENST00000568422 GAB3Q8WWW8 586 aa18.01■□□□□ 0.47
CLN3-231ENST00000568422 CYP2S1Q96SQ9 504 aa18.01■□□□□ 0.47
CLN3-231ENST00000568422 MMS19Q96T76 1030 aa18.01■□□□□ 0.47
CLN3-231ENST00000568422 ECT2Q9H8V3 914 aa18.01■□□□□ 0.47
CLN3-231ENST00000568422 AGPAT3Q9NRZ7 376 aa18.01■□□□□ 0.47
CLN3-231ENST00000568422 CGNQ9P2M7 1197 aaKnown RBP18.01■□□□□ 0.47
CLN3-231ENST00000568422 ARHGAP26Q9UNA1 814 aa18.01■□□□□ 0.47
CLN3-231ENST00000568422 ATG2BQ96BY7 2078 aa18.01■□□□□ 0.47
CLN3-231ENST00000568422 MYO16Q9Y6X6 1858 aa18.01■□□□□ 0.47
CLN3-231ENST00000568422 EML5Q05BV3 1969 aa18■□□□□ 0.47
CLN3-231ENST00000568422 TGFB1I1O43294 461 aa18■□□□□ 0.47
CLN3-231ENST00000568422 RNF40O75150 1001 aa18■□□□□ 0.47
CLN3-231ENST00000568422 TACC1O75410 805 aa18■□□□□ 0.47
CLN3-231ENST00000568422 RPP40O75818 363 aaKnown RBP18■□□□□ 0.47
CLN3-231ENST00000568422 EGFP01133 1207 aa18■□□□□ 0.47
CLN3-231ENST00000568422 DLATP10515 647 aaKnown RBP18■□□□□ 0.47
CLN3-231ENST00000568422 GNL1P36915 607 aaPredicted RBP18■□□□□ 0.47
CLN3-231ENST00000568422 GRIK1P39086 918 aa18■□□□□ 0.47
CLN3-231ENST00000568422 PSMC1P62191 440 aaKnown RBP18■□□□□ 0.47
CLN3-231ENST00000568422 CYP27A1Q02318 531 aa18■□□□□ 0.47
CLN3-231ENST00000568422 PSMD6Q15008 389 aa18■□□□□ 0.47
CLN3-231ENST00000568422 CCDC142Q17RM4 750 aa18■□□□□ 0.47
CLN3-231ENST00000568422 SHC4Q6S5L8 630 aa18■□□□□ 0.47
CLN3-231ENST00000568422 PRR23CQ6ZRP0 262 aa18■□□□□ 0.47
CLN3-231ENST00000568422 DENND5BQ6ZUT9 1274 aa18■□□□□ 0.47
CLN3-231ENST00000568422 HS2ST1Q7LGA3 356 aa18■□□□□ 0.47
CLN3-231ENST00000568422 CACNA2D4Q7Z3S7 1137 aa18■□□□□ 0.47
CLN3-231ENST00000568422 ARL14EPQ8N8R7 260 aaPredicted RBP18■□□□□ 0.47
CLN3-231ENST00000568422 XXYLT1Q8NBI6 393 aa18■□□□□ 0.47
CLN3-231ENST00000568422 MYLPFQ96A32 169 aa18■□□□□ 0.47
CLN3-231ENST00000568422 SLC22A12Q96S37 553 aa18■□□□□ 0.47
CLN3-231ENST00000568422 SNX25Q9H3E2 840 aa18■□□□□ 0.47
CLN3-231ENST00000568422 CRTAC1Q9NQ79 661 aa18■□□□□ 0.47
CLN3-231ENST00000568422 TRPM5Q9NZQ8 1165 aa18■□□□□ 0.47
CLN3-231ENST00000568422 DYNC1LI1Q9Y6G9 523 aaKnown RBP18■□□□□ 0.47
CLN3-231ENST00000568422 C2orf78A6NCI8 922 aa17.99■□□□□ 0.47
CLN3-231ENST00000568422 SLC30A4O14863 429 aa17.99■□□□□ 0.47
CLN3-231ENST00000568422 PDGFRBP09619 1106 aa17.99■□□□□ 0.47
CLN3-231ENST00000568422 BDNFP23560 247 aa17.99■□□□□ 0.47
CLN3-231ENST00000568422 NOP14P78316 857 aaKnown RBP17.99■□□□□ 0.47
CLN3-231ENST00000568422 CYP24A1Q07973 514 aa17.99■□□□□ 0.47
CLN3-231ENST00000568422 EHHADHQ08426 723 aa17.99■□□□□ 0.47
CLN3-231ENST00000568422 EML3Q32P44 896 aa17.99■□□□□ 0.47
CLN3-231ENST00000568422 PKN3Q6P5Z2 889 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms