RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 C2orf78A6NCI8 922 aa12.7□□□□□ -0.38
CLK3-222ENST00000568232 TRABD2BA6NFA1 517 aa12.7□□□□□ -0.38
CLK3-222ENST00000568232 CDKL5O76039 1030 aa12.7□□□□□ -0.38
CLK3-222ENST00000568232 CYP11A1P05108 521 aa12.7□□□□□ -0.38
CLK3-222ENST00000568232 CKMP06732 381 aa12.7□□□□□ -0.38
CLK3-222ENST00000568232 USP17L7P0C7H9 530 aa12.7□□□□□ -0.38
CLK3-222ENST00000568232 FDPSP14324 419 aaKnown RBP12.7□□□□□ -0.38
CLK3-222ENST00000568232 MATR3P43243 847 aaKnown RBP eCLIP12.7□□□□□ -0.38
CLK3-222ENST00000568232 MCL1Q07820 350 aa12.7□□□□□ -0.38
CLK3-222ENST00000568232 MAPK7Q13164 816 aa12.7□□□□□ -0.38
CLK3-222ENST00000568232 SLC14A1Q13336 389 aa12.7□□□□□ -0.38
CLK3-222ENST00000568232 DDR2Q16832 855 aa12.7□□□□□ -0.38
CLK3-222ENST00000568232 ZNF605Q86T29 641 aa12.7□□□□□ -0.38
CLK3-222ENST00000568232 SLC41A1Q8IVJ1 513 aa12.7□□□□□ -0.38
CLK3-222ENST00000568232 ERMNQ8TAM6 284 aa12.7□□□□□ -0.38
CLK3-222ENST00000568232 PIP4K2CQ8TBX8 421 aa12.7□□□□□ -0.38
CLK3-222ENST00000568232 SPPL2BQ8TCT7 592 aa12.7□□□□□ -0.38
CLK3-222ENST00000568232 PI4K2AQ9BTU6 479 aa12.7□□□□□ -0.38
CLK3-222ENST00000568232 BRMS1Q9HCU9 246 aa12.7□□□□□ -0.38
CLK3-222ENST00000568232 ORC3Q9UBD5 711 aaPredicted RBP12.7□□□□□ -0.38
CLK3-222ENST00000568232 DKK4Q9UBT3 224 aa12.7□□□□□ -0.38
CLK3-222ENST00000568232 KIAA1024Q9UPX6 916 aa12.7□□□□□ -0.38
CLK3-222ENST00000568232 APOBEC2Q9Y235 224 aaKnown RBP12.7□□□□□ -0.38
CLK3-222ENST00000568232 RBM19Q9Y4C8 960 aaKnown RBP12.7□□□□□ -0.38
CLK3-222ENST00000568232 RAI2Q9Y5P3 530 aa12.7□□□□□ -0.38
CLK3-222ENST00000568232 CYP46A1Q9Y6A2 500 aa12.7□□□□□ -0.38
CLK3-222ENST00000568232 CITO14578 2027 aa12.7□□□□□ -0.38
CLK3-222ENST00000568232 TRAV19A0A0A6YYK7 116 aa12.69□□□□□ -0.38
CLK3-222ENST00000568232 CLDN3O15551 220 aa12.69□□□□□ -0.38
CLK3-222ENST00000568232 CBFA2T3O75081 653 aa12.69□□□□□ -0.38
CLK3-222ENST00000568232 PRPF40AO75400 957 aaKnown RBP12.69□□□□□ -0.38
CLK3-222ENST00000568232 NFATC1O95644 943 aa12.69□□□□□ -0.38
CLK3-222ENST00000568232 SYPP08247 313 aa12.69□□□□□ -0.38
CLK3-222ENST00000568232 CLTAP09496 248 aa12.69□□□□□ -0.38
CLK3-222ENST00000568232 CSH1P0DML2 217 aa12.69□□□□□ -0.38
CLK3-222ENST00000568232 CSH2P0DML3 217 aa12.69□□□□□ -0.38
CLK3-222ENST00000568232 HOXB1P14653 301 aaPredicted RBP12.69□□□□□ -0.38
CLK3-222ENST00000568232 CCT6AP40227 531 aaKnown RBP12.69□□□□□ -0.38
CLK3-222ENST00000568232 KIR2DL1P43626 348 aaPredicted RBP12.69□□□□□ -0.38
CLK3-222ENST00000568232 ZXDBP98169 803 aa12.69□□□□□ -0.38
CLK3-222ENST00000568232 PPP2R3AQ06190 1150 aa12.69□□□□□ -0.38
CLK3-222ENST00000568232 STRN3Q13033 797 aa12.69□□□□□ -0.38
CLK3-222ENST00000568232 BYSLQ13895 437 aaKnown RBP12.69□□□□□ -0.38
CLK3-222ENST00000568232 SAFBQ15424 915 aaKnown RBP eCLIP12.69□□□□□ -0.38
CLK3-222ENST00000568232 ENOX2Q16206 610 aaKnown RBP12.69□□□□□ -0.38
CLK3-222ENST00000568232 PLEKHG6Q3KR16 790 aa12.69□□□□□ -0.38
CLK3-222ENST00000568232 SPATA1Q5VX52 437 aa12.69□□□□□ -0.38
CLK3-222ENST00000568232 C9orf57Q5W0N0 161 aa12.69□□□□□ -0.38
CLK3-222ENST00000568232 WSCD1Q658N2 575 aa12.69□□□□□ -0.38
CLK3-222ENST00000568232 TMPRSS7Q7RTY8 843 aa12.69□□□□□ -0.38
CLK3-222ENST00000568232 C2orf15Q8WU43 125 aaKnown RBP12.69□□□□□ -0.38
CLK3-222ENST00000568232 PNMA5Q96PV4 448 aa12.69□□□□□ -0.38
CLK3-222ENST00000568232 HS3ST6Q96QI5 342 aa12.69□□□□□ -0.38
CLK3-222ENST00000568232 RUSC1Q9BVN2 902 aa12.69□□□□□ -0.38
CLK3-222ENST00000568232 DDX19AQ9NUU7 478 aaKnown RBP12.69□□□□□ -0.38
CLK3-222ENST00000568232 GCNT4Q9P109 453 aa12.69□□□□□ -0.38
CLK3-222ENST00000568232 PCDHB5Q9Y5E4 795 aa12.69□□□□□ -0.38
CLK3-222ENST00000568232 GON4LQ3T8J9 2241 aa12.69□□□□□ -0.38
CLK3-222ENST00000568232 ASXL3Q9C0F0 2248 aa12.69□□□□□ -0.38
CLK3-222ENST00000568232 TSC2P49815 1807 aa12.68□□□□□ -0.38
CLK3-222ENST00000568232 FAM149AA5PLN7 773 aa12.68□□□□□ -0.38
CLK3-222ENST00000568232 E9PMD0 336 aa12.68□□□□□ -0.38
CLK3-222ENST00000568232 TK2O00142 265 aa12.68□□□□□ -0.38
CLK3-222ENST00000568232 PIRO00625 290 aa12.68□□□□□ -0.38
CLK3-222ENST00000568232 CYB561D2O14569 222 aa12.68□□□□□ -0.38
CLK3-222ENST00000568232 SCAMP3O14828 347 aaKnown RBP12.68□□□□□ -0.38
CLK3-222ENST00000568232 ITPKBP27987 946 aa12.68□□□□□ -0.38
CLK3-222ENST00000568232 EOGTQ5NDL2 527 aa12.68□□□□□ -0.38
CLK3-222ENST00000568232 JADE1Q6IE81 842 aa12.68□□□□□ -0.38
CLK3-222ENST00000568232 C12orf40Q86WS4 652 aa12.68□□□□□ -0.38
CLK3-222ENST00000568232 METTL23Q86XA0 190 aa12.68□□□□□ -0.38
CLK3-222ENST00000568232 SCUBE3Q8IX30 993 aa12.68□□□□□ -0.38
CLK3-222ENST00000568232 DIS3L2Q8IYB7 885 aaKnown RBP12.68□□□□□ -0.38
CLK3-222ENST00000568232 THEM5Q8N1Q8 247 aa12.68□□□□□ -0.38
CLK3-222ENST00000568232 ZNF843Q8N446 348 aa12.68□□□□□ -0.38
CLK3-222ENST00000568232 TRIML1Q8N9V2 468 aa12.68□□□□□ -0.38
CLK3-222ENST00000568232 ERLEC1Q96DZ1 483 aa12.68□□□□□ -0.38
CLK3-222ENST00000568232 HSPA12BQ96MM6 686 aa12.68□□□□□ -0.38
CLK3-222ENST00000568232 YTHDC1Q96MU7 727 aaKnown RBP12.68□□□□□ -0.38
CLK3-222ENST00000568232 PYM1Q9BRP8 204 aaKnown RBP12.68□□□□□ -0.38
CLK3-222ENST00000568232 TMEM206Q9H813 350 aa12.68□□□□□ -0.38
CLK3-222ENST00000568232 TOR4AQ9NXH8 423 aa12.68□□□□□ -0.38
CLK3-222ENST00000568232 PCOLCE2Q9UKZ9 415 aa12.68□□□□□ -0.38
CLK3-222ENST00000568232 ACACAQ13085 2346 aa12.68□□□□□ -0.38
CLK3-222ENST00000568232 NAV2Q8IVL1 2488 aa12.67□□□□□ -0.38
CLK3-222ENST00000568232 PI4KAP42356 2102 aa12.67□□□□□ -0.38
CLK3-222ENST00000568232 DENND4CQ5VZ89 1909 aa12.67□□□□□ -0.38
CLK3-222ENST00000568232 MYMKA6NI61 221 aa12.67□□□□□ -0.38
CLK3-222ENST00000568232 GOLGA8CPA6NN73 597 aa12.67□□□□□ -0.38
CLK3-222ENST00000568232 ATXN7O15265 892 aaPredicted RBP12.67□□□□□ -0.38
CLK3-222ENST00000568232 XPOTO43592 962 aaKnown RBP12.67□□□□□ -0.38
CLK3-222ENST00000568232 KAT7O95251 611 aa12.67□□□□□ -0.38
CLK3-222ENST00000568232 CYP17A1P05093 508 aa12.67□□□□□ -0.38
CLK3-222ENST00000568232 CENPBP07199 599 aaPredicted RBP12.67□□□□□ -0.38
CLK3-222ENST00000568232 GABRG2P18507 467 aa12.67□□□□□ -0.38
CLK3-222ENST00000568232 HDCP19113 662 aa12.67□□□□□ -0.38
CLK3-222ENST00000568232 MUTP22033 750 aa12.67□□□□□ -0.38
CLK3-222ENST00000568232 CYP2F1P24903 491 aa12.67□□□□□ -0.38
CLK3-222ENST00000568232 MAOBP27338 520 aa12.67□□□□□ -0.38
CLK3-222ENST00000568232 KDSRQ06136 332 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms