RNA–Protein interactions for RNA: ENST00000566550.1

HERPUD1-211, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 2

Gene HERPUD1, Length 511 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-211ENST00000566550 SNX8Q9Y5X2 465 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 ACTL7AQ9Y615 435 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 PIAS3Q9Y6X2 628 aa3.69□□□□□ -1.82
HERPUD1-211ENST00000566550 A0A0A6YYK5 440 aaPredicted RBP3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 MBD3L4A6NDZ8 208 aaPredicted RBP3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 MBD3L3A6NE82 208 aaPredicted RBP3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 PTGES3LE9PB15 166 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 H3BNC9 293 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 H7C4K7 107 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 PCDH17O14917 1159 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 KIAA0355O15063 1070 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 KLK10O43240 276 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 PHF2O75151 1096 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 MAFO75444 373 aaPredicted RBP3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 LY86O95711 162 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 MLYCDO95822 493 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 SCGB1D1O95968 90 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 ESR1P03372 595 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 GNAI2P04899 355 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 GRPP07492 148 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 CSF1P09603 554 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 LTA4HP09960 611 aaKnown RBP3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 HSPA1AP0DMV8 641 aaKnown RBP3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 HSPA1BP0DMV9 641 aaKnown RBP3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 ACVR2AP27037 513 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 PCSK1P29120 753 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 ABCD1P33897 745 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 PTPN7P35236 360 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 THBS2P35442 1172 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 PGM1P36871 562 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 SREBF1P36956 1147 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 AFF3P51826 1226 aaKnown RBP3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 RBM5P52756 815 aaKnown RBP eCLIP3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 UCP3P55916 312 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 CORO7P57737 925 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 RPP30P78346 268 aaKnown RBP3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 MVKQ03426 396 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 NFATC3Q12968 1075 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 MPP3Q13368 585 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 PRPF4BQ13523 1007 aaKnown RBP3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 EFR3AQ14156 821 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 SLC29A2Q14542 456 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 DGKDQ16760 1214 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 MST1LQ2TV78 715 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 EEF1AKMT2Q5JPI9 291 aaKnown RBP3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 SLC10A5Q5PT55 438 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 PHF19Q5T6S3 580 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 FAXCQ5TGI0 409 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 RINT1Q6NUQ1 792 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 RPUSD3Q6P087 351 aaKnown RBP3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 KLHL24Q6TFL4 600 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 TMC5Q6UXY8 1006 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 RAB11FIP2Q7L804 512 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 CCDC91Q7Z6B0 441 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 PXKQ7Z7A4 578 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 ZSCAN2Q7Z7L9 614 aaPredicted RBP3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 CEP97Q8IW35 865 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 DIS3L2Q8IYB7 885 aaKnown RBP3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 CNTROBQ8N137 903 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 TTC39CQ8N584 583 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 KCTD6Q8NC69 237 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 CREB3L4Q8TEY5 395 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 CFHR4Q92496 578 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 TBC1D5Q92609 795 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 SPSB4Q96A44 273 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 NSUN4Q96CB9 384 aaKnown RBP3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 GRAMD1AQ96CP6 724 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 REEP2Q9BRK0 252 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 SOX7Q9BT81 388 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 DDX23Q9BUQ8 820 aaKnown RBP3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 ITPAQ9BY32 194 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 MRPL9Q9BYD2 267 aaKnown RBP3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 DPH1Q9BZG8 443 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 KIAA1683Q9H0B3 1180 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 OR10A5Q9H207 317 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 TMEM8AQ9HCN3 771 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 ABCF3Q9NUQ8 709 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 SPATA6Q9NWH7 488 aaPredicted RBP3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 DBR1Q9UK59 544 aaKnown RBP3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 DAPP1Q9UN19 280 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 DNAJC16Q9Y2G8 782 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 CYP46A1Q9Y6A2 500 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 IRS2Q9Y4H2 1338 aa3.68□□□□□ -1.82
HERPUD1-211ENST00000566550 TDRD9Q8NDG6 1382 aaKnown RBP3.67□□□□□ -1.82
HERPUD1-211ENST00000566550 ZC3H12DA2A288 527 aaKnown RBP3.67□□□□□ -1.82
HERPUD1-211ENST00000566550 CCDC78A2IDD5 438 aa3.67□□□□□ -1.82
HERPUD1-211ENST00000566550 ZNF785A8K8V0 405 aa3.67□□□□□ -1.82
HERPUD1-211ENST00000566550 M0QYG6 137 aa3.67□□□□□ -1.82
HERPUD1-211ENST00000566550 GRM6O15303 877 aa3.67□□□□□ -1.82
HERPUD1-211ENST00000566550 MTSS1O43312 755 aa3.67□□□□□ -1.82
HERPUD1-211ENST00000566550 TRIM13O60858 407 aa3.67□□□□□ -1.82
HERPUD1-211ENST00000566550 CUTAO60888 179 aa3.67□□□□□ -1.82
HERPUD1-211ENST00000566550 TBCAO75347 108 aaKnown RBP3.67□□□□□ -1.82
HERPUD1-211ENST00000566550 TSPAN9O75954 239 aa3.67□□□□□ -1.82
HERPUD1-211ENST00000566550 BEST1O76090 585 aa3.67□□□□□ -1.82
HERPUD1-211ENST00000566550 ADRB2P07550 413 aa3.67□□□□□ -1.82
HERPUD1-211ENST00000566550 GJB1P08034 283 aa3.67□□□□□ -1.82
HERPUD1-211ENST00000566550 SBK3P0C264 359 aa3.67□□□□□ -1.82
HERPUD1-211ENST00000566550 CSH1P0DML2 217 aa3.67□□□□□ -1.82
HERPUD1-211ENST00000566550 CSH2P0DML3 217 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms