RNA–Protein interactions for RNA: ENST00000564678.1

HERPUD1-209, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 1 (best)

Gene HERPUD1, Length 2,199 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-209ENST00000564678 CDT1Q9H211 546 aa7.67□□□□□ -1.18
HERPUD1-209ENST00000564678 PABPC3Q9H361 631 aaKnown RBP7.67□□□□□ -1.18
HERPUD1-209ENST00000564678 IFT122Q9HBG6 1241 aa7.67□□□□□ -1.18
HERPUD1-209ENST00000564678 GRHL1Q9NZI5 618 aa7.67□□□□□ -1.18
HERPUD1-209ENST00000564678 WHRNQ9P202 907 aa7.67□□□□□ -1.18
HERPUD1-209ENST00000564678 STRIP2Q9ULQ0 834 aa7.67□□□□□ -1.18
HERPUD1-209ENST00000564678 SNX24Q9Y343 169 aa7.67□□□□□ -1.18
HERPUD1-209ENST00000564678 UMODL1Q5DID0 1318 aa7.67□□□□□ -1.18
HERPUD1-209ENST00000564678 TMEM191CA6NGB0 347 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 PDHXO00330 501 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 ZEB2O60315 1214 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 KATNA1O75449 491 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 FAM163BP0C2L3 166 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 CYP2C8P10632 490 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 RARGP13631 454 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 NR1D1P20393 614 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 POLR2BP30876 1174 aaKnown RBP7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 CLCN3P51790 818 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 PMS2P54278 862 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 COPS2P61201 443 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 CAV1Q03135 178 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 CALCOCO2Q13137 446 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 PIGHQ14442 188 aaPredicted RBP7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 CCNG2Q16589 344 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 ZDHHC24Q6UX98 284 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 RCOR2Q8IZ40 523 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 TTC39CQ8N584 583 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 TTC8Q8TAM2 541 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 FBXO25Q8TCJ0 367 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 ZBTB9Q96C00 473 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 CYP3A43Q9HB55 503 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 PLXNA1Q9UIW2 1896 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 TCRBV5S1A1TA0A578 114 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 TCRBV7S2A1N4TA0A589 114 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 FAM170AA1A519 330 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 EIF3HO15372 352 aaKnown RBP eCLIP7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 GAS8O95995 478 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 CALCAP01258 141 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 HOXD8P13378 290 aaPredicted RBP7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 P4HA1P13674 534 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 ASPAP45381 313 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 RPL21P46778 160 aaKnown RBP7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 ST13P50502 369 aaKnown RBP7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 GSCP56915 257 aaPredicted RBP7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 LACTBP83111 547 aaPredicted RBP7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 LMNB2Q03252 620 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 ZNF844Q08AG5 666 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 KLF1Q13351 362 aaPredicted RBP7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 NBPF20Q3BBV1 942 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 C2orf27AQ580R0 203 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 ZNF667Q5HYK9 610 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 EEF1DP3Q658K8 133 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 MMS22LQ6ZRQ5 1243 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 PCGF5Q86SE9 256 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 HOOK3Q86VS8 718 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 CPNE8Q86YQ8 564 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 PASD1Q8IV76 773 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 NIPA2Q8N8Q9 360 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 BBOF1Q8ND07 529 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 TRAPPC12Q8WVT3 735 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 RBM41Q96IZ5 413 aaKnown RBP7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 TMEM109Q9BVC6 243 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 BCO2Q9BYV7 579 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 TRIM7Q9C029 511 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 KATNBL1Q9H079 304 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 MINDY3Q9H8M7 445 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 WDR35Q9P2L0 1181 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 PFDN2Q9UHV9 154 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 TAGLN3Q9UI15 199 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 LHX6Q9UPM6 363 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 PTCH2Q9Y6C5 1203 aa7.66□□□□□ -1.18
HERPUD1-209ENST00000564678 ANK1P16157 1881 aa7.65□□□□□ -1.18
HERPUD1-209ENST00000564678 BTBD19C9JJ37 291 aa7.65□□□□□ -1.18
HERPUD1-209ENST00000564678 GPR25O00155 361 aa7.65□□□□□ -1.18
HERPUD1-209ENST00000564678 PDPK1O15530 556 aa7.65□□□□□ -1.18
HERPUD1-209ENST00000564678 STAG3L1P0CL83 205 aa7.65□□□□□ -1.18
HERPUD1-209ENST00000564678 JUNDP17535 347 aa7.65□□□□□ -1.18
HERPUD1-209ENST00000564678 GNGT1P63211 74 aa7.65□□□□□ -1.18
HERPUD1-209ENST00000564678 IFFO1Q0D2I5 559 aa7.65□□□□□ -1.18
HERPUD1-209ENST00000564678 IFRD2Q12894 506 aaPredicted RBP7.65□□□□□ -1.18
HERPUD1-209ENST00000564678 BYSLQ13895 437 aaKnown RBP7.65□□□□□ -1.18
HERPUD1-209ENST00000564678 PCBP1Q15365 356 aaKnown RBP eCLIP7.65□□□□□ -1.18
HERPUD1-209ENST00000564678 PPP1R7Q15435 360 aa7.65□□□□□ -1.18
HERPUD1-209ENST00000564678 DDR2Q16832 855 aa7.65□□□□□ -1.18
HERPUD1-209ENST00000564678 DUSP28Q4G0W2 176 aa7.65□□□□□ -1.18
HERPUD1-209ENST00000564678 KCTD16Q68DU8 428 aa7.65□□□□□ -1.18
HERPUD1-209ENST00000564678 IQSEC1Q6DN90 963 aa7.65□□□□□ -1.18
HERPUD1-209ENST00000564678 DRICH1Q6PGQ1 229 aaPredicted RBP7.65□□□□□ -1.18
HERPUD1-209ENST00000564678 MTHFD1LQ6UB35 978 aa7.65□□□□□ -1.18
HERPUD1-209ENST00000564678 ZNF410Q86VK4 478 aa7.65□□□□□ -1.18
HERPUD1-209ENST00000564678 ERICH1Q86X53 443 aa7.65□□□□□ -1.18
HERPUD1-209ENST00000564678 C3orf20Q8ND61 904 aa7.65□□□□□ -1.18
HERPUD1-209ENST00000564678 FNIP1Q8TF40 1166 aa7.65□□□□□ -1.18
HERPUD1-209ENST00000564678 SHDQ96IW2 340 aa7.65□□□□□ -1.18
HERPUD1-209ENST00000564678 C16orf70Q9BSU1 422 aa7.65□□□□□ -1.18
HERPUD1-209ENST00000564678 OSBPL8Q9BZF1 889 aa7.65□□□□□ -1.18
HERPUD1-209ENST00000564678 DCLK3Q9C098 648 aa7.65□□□□□ -1.18
HERPUD1-209ENST00000564678 ABHD16BQ9H3Z7 469 aa7.65□□□□□ -1.18
HERPUD1-209ENST00000564678 C2CD2Q9Y426 696 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms