RNA–Protein interactions for RNA: ENST00000559511.5

SPG11-217, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 2

Gene SPG11, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-217ENST00000559511 IRF5Q13568 498 aa11.62□□□□□ -0.55
SPG11-217ENST00000559511 ZNF268Q14587 947 aaPredicted RBP11.62□□□□□ -0.55
SPG11-217ENST00000559511 TAF5Q15542 800 aa11.62□□□□□ -0.55
SPG11-217ENST00000559511 C6orf89Q6UWU4 347 aa11.62□□□□□ -0.55
SPG11-217ENST00000559511 SPATS2Q86XZ4 545 aaKnown RBP11.62□□□□□ -0.55
SPG11-217ENST00000559511 KAT2BQ92831 832 aa11.62□□□□□ -0.55
SPG11-217ENST00000559511 NKD2Q969F2 451 aaPredicted RBP11.62□□□□□ -0.55
SPG11-217ENST00000559511 CHMP6Q96FZ7 201 aa11.62□□□□□ -0.55
SPG11-217ENST00000559511 RBM15Q96T37 977 aaKnown RBP eCLIP11.62□□□□□ -0.55
SPG11-217ENST00000559511 WDR35Q9P2L0 1181 aa11.62□□□□□ -0.55
SPG11-217ENST00000559511 ITGA11Q9UKX5 1188 aa11.62□□□□□ -0.55
SPG11-217ENST00000559511 RRN3P2A6NIE6 340 aa11.62□□□□□ -0.55
SPG11-217ENST00000559511 PIK3R2O00459 728 aa11.62□□□□□ -0.55
SPG11-217ENST00000559511 TCEA3O75764 348 aa11.62□□□□□ -0.55
SPG11-217ENST00000559511 F2P00734 622 aa11.62□□□□□ -0.55
SPG11-217ENST00000559511 HMGCRP04035 888 aa11.62□□□□□ -0.55
SPG11-217ENST00000559511 KRT7P08729 469 aa11.62□□□□□ -0.55
SPG11-217ENST00000559511 VDRP11473 427 aa11.62□□□□□ -0.55
SPG11-217ENST00000559511 P4HA1P13674 534 aa11.62□□□□□ -0.55
SPG11-217ENST00000559511 MAGEA4P43358 317 aa11.62□□□□□ -0.55
SPG11-217ENST00000559511 LIG3P49916 1009 aa11.62□□□□□ -0.55
SPG11-217ENST00000559511 IFT88Q13099 833 aa11.62□□□□□ -0.55
SPG11-217ENST00000559511 CNGA2Q16280 664 aa11.62□□□□□ -0.55
SPG11-217ENST00000559511 TAZQ16635 292 aa11.62□□□□□ -0.55
SPG11-217ENST00000559511 KYAT1Q16773 422 aa11.62□□□□□ -0.55
SPG11-217ENST00000559511 KIZQ2M2Z5 673 aa11.62□□□□□ -0.55
SPG11-217ENST00000559511 TAOK1Q7L7X3 1001 aa11.62□□□□□ -0.55
SPG11-217ENST00000559511 TADA2BQ86TJ2 420 aa11.62□□□□□ -0.55
SPG11-217ENST00000559511 TLK2Q86UE8 772 aa11.62□□□□□ -0.55
SPG11-217ENST00000559511 ZNF410Q86VK4 478 aa11.62□□□□□ -0.55
SPG11-217ENST00000559511 CYP4X1Q8N118 509 aa11.62□□□□□ -0.55
SPG11-217ENST00000559511 SLC35B2Q8TB61 432 aa11.62□□□□□ -0.55
SPG11-217ENST00000559511 CCHCR1Q8TD31 782 aa11.62□□□□□ -0.55
SPG11-217ENST00000559511 ARHGEF2Q92974 986 aaKnown RBP11.62□□□□□ -0.55
SPG11-217ENST00000559511 MCRS1Q96EZ8 462 aa11.62□□□□□ -0.55
SPG11-217ENST00000559511 KIF12Q96FN5 646 aa11.62□□□□□ -0.55
SPG11-217ENST00000559511 PRMT1Q99873 361 aaKnown RBP11.62□□□□□ -0.55
SPG11-217ENST00000559511 C10orf88Q9H8K7 445 aa11.62□□□□□ -0.55
SPG11-217ENST00000559511 INTS9Q9NV88 658 aaKnown RBP11.62□□□□□ -0.55
SPG11-217ENST00000559511 PCSK1NQ9UHG2 260 aa11.62□□□□□ -0.55
SPG11-217ENST00000559511 BARX2Q9UMQ3 279 aaPredicted RBP11.62□□□□□ -0.55
SPG11-217ENST00000559511 A0A087WUV0 522 aaPredicted RBP11.61□□□□□ -0.55
SPG11-217ENST00000559511 SGK1O00141 431 aa11.61□□□□□ -0.55
SPG11-217ENST00000559511 CST8O60676 142 aa11.61□□□□□ -0.55
SPG11-217ENST00000559511 SLC10A3P09131 477 aa11.61□□□□□ -0.55
SPG11-217ENST00000559511 SMIM10L2AP0DMW4 78 aa11.61□□□□□ -0.55
SPG11-217ENST00000559511 SMIM10L2BP0DMW5 78 aa11.61□□□□□ -0.55
SPG11-217ENST00000559511 PECAM1P16284 738 aaPredicted RBP11.61□□□□□ -0.55
SPG11-217ENST00000559511 CYP2B6P20813 491 aa11.61□□□□□ -0.55
SPG11-217ENST00000559511 KDELR1P24390 212 aa11.61□□□□□ -0.55
SPG11-217ENST00000559511 MIPP30301 263 aa11.61□□□□□ -0.55
SPG11-217ENST00000559511 GDF10P55107 478 aa11.61□□□□□ -0.55
SPG11-217ENST00000559511 RBP5P82980 135 aa11.61□□□□□ -0.55
SPG11-217ENST00000559511 OTUD4Q01804 1114 aaKnown RBP11.61□□□□□ -0.55
SPG11-217ENST00000559511 FASTKD3Q14CZ7 662 aaKnown RBP11.61□□□□□ -0.55
SPG11-217ENST00000559511 RAB6CQ53S08 254 aa11.61□□□□□ -0.55
SPG11-217ENST00000559511 TRNP1Q6NT89 227 aa11.61□□□□□ -0.55
SPG11-217ENST00000559511 MICALCLQ6ZW33 695 aa11.61□□□□□ -0.55
SPG11-217ENST00000559511 C12orf29Q8N999 325 aa11.61□□□□□ -0.55
SPG11-217ENST00000559511 ACTL9Q8TC94 416 aa11.61□□□□□ -0.55
SPG11-217ENST00000559511 PIWIL1Q96J94 861 aaKnown RBP11.61□□□□□ -0.55
SPG11-217ENST00000559511 SEC16BQ96JE7 1060 aa11.61□□□□□ -0.55
SPG11-217ENST00000559511 ADPGKQ9BRR6 497 aa11.61□□□□□ -0.55
SPG11-217ENST00000559511 RAB6CQ9H0N0 254 aa11.61□□□□□ -0.55
SPG11-217ENST00000559511 ADAMTS10Q9H324 1103 aa11.61□□□□□ -0.55
SPG11-217ENST00000559511 GGA2Q9UJY4 613 aa11.61□□□□□ -0.55
SPG11-217ENST00000559511 GJD2Q9UKL4 321 aa11.61□□□□□ -0.55
SPG11-217ENST00000559511 TPX2Q9ULW0 747 aaKnown RBP11.61□□□□□ -0.55
SPG11-217ENST00000559511 GINS2Q9Y248 185 aa11.61□□□□□ -0.55
SPG11-217ENST00000559511 PPEF2O14830 753 aa11.6□□□□□ -0.55
SPG11-217ENST00000559511 NPTXRO95502 500 aa11.6□□□□□ -0.55
SPG11-217ENST00000559511 STAU1O95793 577 aaKnown RBP11.6□□□□□ -0.55
SPG11-217ENST00000559511 IFNB1P01574 187 aa11.6□□□□□ -0.55
SPG11-217ENST00000559511 IGHA2P01877 340 aa11.6□□□□□ -0.55
SPG11-217ENST00000559511 PFKMP08237 780 aa11.6□□□□□ -0.55
SPG11-217ENST00000559511 HOXA11P31270 313 aaPredicted RBP11.6□□□□□ -0.55
SPG11-217ENST00000559511 GRM5P41594 1212 aa11.6□□□□□ -0.55
SPG11-217ENST00000559511 PLCB3Q01970 1234 aa11.6□□□□□ -0.55
SPG11-217ENST00000559511 HIC1Q14526 733 aa11.6□□□□□ -0.55
SPG11-217ENST00000559511 HADHQ16836 314 aaKnown RBP11.6□□□□□ -0.55
SPG11-217ENST00000559511 HP1BP3Q5SSJ5 553 aaPredicted RBP11.6□□□□□ -0.55
SPG11-217ENST00000559511 FAM102AQ5T9C2 384 aaPredicted RBP11.6□□□□□ -0.55
SPG11-217ENST00000559511 RNASEH2BQ5TBB1 312 aaKnown RBP11.6□□□□□ -0.55
SPG11-217ENST00000559511 SH3PXD2AQ5TCZ1 1133 aa11.6□□□□□ -0.55
SPG11-217ENST00000559511 CYP4F22Q6NT55 531 aa11.6□□□□□ -0.55
SPG11-217ENST00000559511 VSTM1Q6UX27 236 aa11.6□□□□□ -0.55
SPG11-217ENST00000559511 BBS12Q6ZW61 710 aa11.6□□□□□ -0.55
SPG11-217ENST00000559511 YTHDF3Q7Z739 585 aaKnown RBP11.6□□□□□ -0.55
SPG11-217ENST00000559511 CPLX4Q7Z7G2 160 aa11.6□□□□□ -0.55
SPG11-217ENST00000559511 ZMAT2Q96NC0 199 aaKnown RBP11.6□□□□□ -0.55
SPG11-217ENST00000559511 PEBP4Q96S96 227 aa11.6□□□□□ -0.55
SPG11-217ENST00000559511 FAM49AQ9H0Q0 323 aaPredicted RBP11.6□□□□□ -0.55
SPG11-217ENST00000559511 CDHR5Q9HBB8 845 aa11.6□□□□□ -0.55
SPG11-217ENST00000559511 PCDH9Q9HC56 1237 aa11.6□□□□□ -0.55
SPG11-217ENST00000559511 SAYSD1Q9NPB0 183 aa11.6□□□□□ -0.55
SPG11-217ENST00000559511 TSPAN16Q9UKR8 245 aa11.6□□□□□ -0.55
SPG11-217ENST00000559511 EFR3BQ9Y2G0 817 aa11.6□□□□□ -0.55
SPG11-217ENST00000559511 NRCAMQ92823 1304 aa11.6□□□□□ -0.55
SPG11-217ENST00000559511 TMEM120BA0PK00 339 aa11.6□□□□□ -0.55
SPG11-217ENST00000559511 FAM155AB1AL88 458 aaPredicted RBP11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms