RNA–Protein interactions for RNA: ENST00000558314.5

TPM1-211, Transcript of tropomyosin 1, humanhuman

TSL 1 (best)

Gene TPM1, Length 1,031 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-211ENST00000558314 PCDHA7Q9UN72 937 aa16.62■□□□□ 0.25
TPM1-211ENST00000558314 WNT6Q9Y6F9 365 aa16.62■□□□□ 0.25
TPM1-211ENST00000558314 WDR87Q6ZQQ6 2873 aa16.62■□□□□ 0.25
TPM1-211ENST00000558314 ZNF292O60281 2723 aa16.61■□□□□ 0.25
TPM1-211ENST00000558314 MED19A0JLT2 244 aaPredicted RBP16.61■□□□□ 0.25
TPM1-211ENST00000558314 C2orf78A6NCI8 922 aa16.61■□□□□ 0.25
TPM1-211ENST00000558314 OTOL1A6NHN0 477 aaPredicted RBP16.61■□□□□ 0.25
TPM1-211ENST00000558314 GABRDO14764 452 aa16.61■□□□□ 0.25
TPM1-211ENST00000558314 TGFB1I1O43294 461 aa16.61■□□□□ 0.25
TPM1-211ENST00000558314 HRO43593 1189 aa16.61■□□□□ 0.25
TPM1-211ENST00000558314 CST3P01034 146 aaPredicted RBP16.61■□□□□ 0.25
TPM1-211ENST00000558314 USP17L7P0C7H9 530 aa16.61■□□□□ 0.25
TPM1-211ENST00000558314 GNL1P36915 607 aaPredicted RBP16.61■□□□□ 0.25
TPM1-211ENST00000558314 CYP24A1Q07973 514 aa16.61■□□□□ 0.25
TPM1-211ENST00000558314 CUL4BQ13620 913 aa16.61■□□□□ 0.25
TPM1-211ENST00000558314 CCINQ13939 588 aa16.61■□□□□ 0.25
TPM1-211ENST00000558314 MTF1Q14872 753 aa16.61■□□□□ 0.25
TPM1-211ENST00000558314 CFAP221Q4G0U5 840 aa16.61■□□□□ 0.25
TPM1-211ENST00000558314 NAIF1Q69YI7 327 aaPredicted RBP16.61■□□□□ 0.25
TPM1-211ENST00000558314 PKN3Q6P5Z2 889 aa16.61■□□□□ 0.25
TPM1-211ENST00000558314 EPM2AIP1Q7L775 607 aaPredicted RBP16.61■□□□□ 0.25
TPM1-211ENST00000558314 LONP2Q86WA8 852 aa16.61■□□□□ 0.25
TPM1-211ENST00000558314 CEP57L1Q8IYX8 460 aa16.61■□□□□ 0.25
TPM1-211ENST00000558314 GPR161Q8N6U8 529 aaKnown RBP16.61■□□□□ 0.25
TPM1-211ENST00000558314 SCFD1Q8WVM8 642 aa16.61■□□□□ 0.25
TPM1-211ENST00000558314 PARD6AQ9NPB6 346 aa16.61■□□□□ 0.25
TPM1-211ENST00000558314 POLR3BQ9NW08 1133 aaPredicted RBP16.61■□□□□ 0.25
TPM1-211ENST00000558314 CDV3Q9UKY7 258 aaKnown RBP16.61■□□□□ 0.25
TPM1-211ENST00000558314 SLC8A2Q9UPR5 921 aa16.61■□□□□ 0.25
TPM1-211ENST00000558314 KIF26AQ9ULI4 1882 aaPredicted RBP16.61■□□□□ 0.25
TPM1-211ENST00000558314 ZNF638Q14966 1978 aaKnown RBP16.6■□□□□ 0.25
TPM1-211ENST00000558314 K7ESF4 209 aa16.6■□□□□ 0.25
TPM1-211ENST00000558314 EXOC3O60645 756 aa16.6■□□□□ 0.25
TPM1-211ENST00000558314 EGFP01133 1207 aa16.6■□□□□ 0.25
TPM1-211ENST00000558314 HDCP19113 662 aa16.6■□□□□ 0.25
TPM1-211ENST00000558314 WARSP23381 471 aaKnown RBP16.6■□□□□ 0.25
TPM1-211ENST00000558314 AMPD2Q01433 879 aa16.6■□□□□ 0.25
TPM1-211ENST00000558314 FAM160A1Q05DH4 1040 aa16.6■□□□□ 0.25
TPM1-211ENST00000558314 BIRC3Q13489 604 aa16.6■□□□□ 0.25
TPM1-211ENST00000558314 PKP1Q13835 747 aa16.6■□□□□ 0.25
TPM1-211ENST00000558314 PSMD6Q15008 389 aa16.6■□□□□ 0.25
TPM1-211ENST00000558314 PDGFRLQ15198 375 aa16.6■□□□□ 0.25
TPM1-211ENST00000558314 MAPRE1Q15691 268 aaKnown RBP16.6■□□□□ 0.25
TPM1-211ENST00000558314 WDR72Q3MJ13 1102 aa16.6■□□□□ 0.25
TPM1-211ENST00000558314 LAIR1Q6GTX8 287 aa16.6■□□□□ 0.25
TPM1-211ENST00000558314 FSTL4Q6MZW2 842 aa16.6■□□□□ 0.25
TPM1-211ENST00000558314 FAM171BQ6P995 826 aa16.6■□□□□ 0.25
TPM1-211ENST00000558314 MAMSTRQ6ZN01 415 aa16.6■□□□□ 0.25
TPM1-211ENST00000558314 DPH6Q7L8W6 267 aa16.6■□□□□ 0.25
TPM1-211ENST00000558314 CPA6Q8N4T0 437 aa16.6■□□□□ 0.25
TPM1-211ENST00000558314 SPATA18Q8TC71 538 aa16.6■□□□□ 0.25
TPM1-211ENST00000558314 SH3RF2Q8TEC5 729 aa16.6■□□□□ 0.25
TPM1-211ENST00000558314 SNX21Q969T3 373 aa16.6■□□□□ 0.25
TPM1-211ENST00000558314 CHFRQ96EP1 664 aa16.6■□□□□ 0.25
TPM1-211ENST00000558314 TRMT2BQ96GJ1 504 aaKnown RBP16.6■□□□□ 0.25
TPM1-211ENST00000558314 FUBP3Q96I24 572 aaKnown RBP eCLIP16.6■□□□□ 0.25
TPM1-211ENST00000558314 SERTAD1Q9UHV2 236 aa16.6■□□□□ 0.25
TPM1-211ENST00000558314 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.6■□□□□ 0.25
TPM1-211ENST00000558314 A8MXQ7 604 aa16.59■□□□□ 0.25
TPM1-211ENST00000558314 SCAMP3O14828 347 aaKnown RBP16.59■□□□□ 0.25
TPM1-211ENST00000558314 RNF40O75150 1001 aa16.59■□□□□ 0.25
TPM1-211ENST00000558314 KCNA4P22459 653 aa16.59■□□□□ 0.25
TPM1-211ENST00000558314 MAGEA11P43364 429 aa16.59■□□□□ 0.25
TPM1-211ENST00000558314 CASP4P49662 377 aa16.59■□□□□ 0.25
TPM1-211ENST00000558314 GALK1P51570 392 aa16.59■□□□□ 0.25
TPM1-211ENST00000558314 MYL6P60660 151 aa16.59■□□□□ 0.25
TPM1-211ENST00000558314 LMNB2Q03252 620 aa16.59■□□□□ 0.25
TPM1-211ENST00000558314 DNM1Q05193 864 aaKnown RBP16.59■□□□□ 0.25
TPM1-211ENST00000558314 SCARA5Q6ZMJ2 495 aa16.59■□□□□ 0.25
TPM1-211ENST00000558314 SYNPOQ8N3V7 929 aa16.59■□□□□ 0.25
TPM1-211ENST00000558314 ELMO3Q96BJ8 720 aa16.59■□□□□ 0.25
TPM1-211ENST00000558314 PCED1BQ96HM7 432 aa16.59■□□□□ 0.25
TPM1-211ENST00000558314 P2RY13Q9BPV8 354 aa16.59■□□□□ 0.25
TPM1-211ENST00000558314 DPEP3Q9H4B8 488 aa16.59■□□□□ 0.25
TPM1-211ENST00000558314 MAGEF1Q9HAY2 307 aa16.59■□□□□ 0.25
TPM1-211ENST00000558314 FBRSL1Q9HCM7 1045 aaKnown RBP16.59■□□□□ 0.25
TPM1-211ENST00000558314 TRPM5Q9NZQ8 1165 aa16.59■□□□□ 0.25
TPM1-211ENST00000558314 UBE4BO95155 1302 aa16.59■□□□□ 0.25
TPM1-211ENST00000558314 F8VP50 259 aa16.58■□□□□ 0.24
TPM1-211ENST00000558314 CLDN5O00501 218 aa16.58■□□□□ 0.24
TPM1-211ENST00000558314 RETP07949 1114 aa16.58■□□□□ 0.24
TPM1-211ENST00000558314 CCDC192P0DO97 292 aa16.58■□□□□ 0.24
TPM1-211ENST00000558314 GJA4P35212 333 aa16.58■□□□□ 0.24
TPM1-211ENST00000558314 USP46P62068 366 aa16.58■□□□□ 0.24
TPM1-211ENST00000558314 ZNF268Q14587 947 aaPredicted RBP16.58■□□□□ 0.24
TPM1-211ENST00000558314 ZNF77Q15935 545 aa16.58■□□□□ 0.24
TPM1-211ENST00000558314 TMEM196Q5HYL7 178 aa16.58■□□□□ 0.24
TPM1-211ENST00000558314 RESP18Q5W5W9 173 aa16.58■□□□□ 0.24
TPM1-211ENST00000558314 VSTM1Q6UX27 236 aa16.58■□□□□ 0.24
TPM1-211ENST00000558314 DENND5BQ6ZUT9 1274 aa16.58■□□□□ 0.24
TPM1-211ENST00000558314 OSCP1Q8WVF1 389 aa16.58■□□□□ 0.24
TPM1-211ENST00000558314 ZNF516Q92618 1163 aa16.58■□□□□ 0.24
TPM1-211ENST00000558314 MYRFLQ96LU7 910 aa16.58■□□□□ 0.24
TPM1-211ENST00000558314 MED10Q9BTT4 135 aa16.58■□□□□ 0.24
TPM1-211ENST00000558314 ECT2Q9H8V3 914 aa16.58■□□□□ 0.24
TPM1-211ENST00000558314 EXOC1Q9NV70 894 aa16.58■□□□□ 0.24
TPM1-211ENST00000558314 SMPD4Q9NXE4 827 aa16.58■□□□□ 0.24
TPM1-211ENST00000558314 CFAP45Q9UL16 551 aa16.58■□□□□ 0.24
TPM1-211ENST00000558314 CEP250Q9BV73 2442 aa16.57■□□□□ 0.24
TPM1-211ENST00000558314 DCDC2BA2VCK2 349 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms