RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 KLC4Q9NSK0 619 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 FAM105AQ9NUU6 356 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 TSPAN16Q9UKR8 245 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 ST3GAL5Q9UNP4 418 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 EFR3BQ9Y2G0 817 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 HES2Q9Y543 173 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 GOLGA6L10A6NI86 522 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 NDC80O14777 642 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 ZNF623O75123 536 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 MYBL2P10244 700 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 EZRP15311 586 aaKnown RBP13.31□□□□□ -0.28
SHMT2-229ENST00000557348 AKAP5P24588 427 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 ELF1P32519 619 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 PTGISQ16647 500 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 FAM26DQ5JW98 314 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 CCDC137Q6PK04 289 aaKnown RBP13.31□□□□□ -0.28
SHMT2-229ENST00000557348 C6orf89Q6UWU4 347 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 LIMS2Q7Z4I7 341 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 XYLT1Q86Y38 959 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 JAMLQ86YT9 394 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 CRYBG2Q8N1P7 616 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 PRELID2Q8N945 189 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 SLAIN1Q8ND83 568 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 CASKIN2Q8WXE0 1202 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 PGBD4Q96DM1 585 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 TWNKQ96RR1 684 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 FRMD8P1Q9BZ68 369 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-229ENST00000557348 ASNSD1Q9NWL6 643 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 HMGXB4Q9UGU5 601 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 MCM8Q9UJA3 840 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 NFU1Q9UMS0 254 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 SUFUQ9UMX1 484 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 NOD1Q9Y239 953 aa13.31□□□□□ -0.28
SHMT2-229ENST00000557348 ARHGEF37A1IGU5 675 aa13.3□□□□□ -0.28
SHMT2-229ENST00000557348 TTI1O43156 1089 aa13.3□□□□□ -0.28
SHMT2-229ENST00000557348 AOC2O75106 756 aa13.3□□□□□ -0.28
SHMT2-229ENST00000557348 RNF8O76064 485 aa13.3□□□□□ -0.28
SHMT2-229ENST00000557348 ECEL1O95672 775 aa13.3□□□□□ -0.28
SHMT2-229ENST00000557348 GAS8O95995 478 aa13.3□□□□□ -0.28
SHMT2-229ENST00000557348 WARSP23381 471 aaKnown RBP13.3□□□□□ -0.28
SHMT2-229ENST00000557348 CCND3P30281 292 aaPredicted RBP13.3□□□□□ -0.28
SHMT2-229ENST00000557348 RPL9P32969 192 aaKnown RBP13.3□□□□□ -0.28
SHMT2-229ENST00000557348 COILP38432 576 aaPredicted RBP13.3□□□□□ -0.28
SHMT2-229ENST00000557348 MDH1P40925 334 aaKnown RBP13.3□□□□□ -0.28
SHMT2-229ENST00000557348 SSR1P43307 286 aaKnown RBP13.3□□□□□ -0.28
SHMT2-229ENST00000557348 ACADSBP45954 432 aa13.3□□□□□ -0.28
SHMT2-229ENST00000557348 CARSP49589 748 aaKnown RBP13.3□□□□□ -0.28
SHMT2-229ENST00000557348 BCAT1P54687 386 aa13.3□□□□□ -0.28
SHMT2-229ENST00000557348 SLC8A3P57103 927 aa13.3□□□□□ -0.28
SHMT2-229ENST00000557348 SATB1Q01826 763 aa13.3□□□□□ -0.28
SHMT2-229ENST00000557348 LACTB2Q53H82 288 aaPredicted RBP13.3□□□□□ -0.28
SHMT2-229ENST00000557348 GLRA4Q5JXX5 417 aa13.3□□□□□ -0.28
SHMT2-229ENST00000557348 MRPL10Q7Z7H8 261 aaKnown RBP13.3□□□□□ -0.28
SHMT2-229ENST00000557348 CCDC105Q8IYK2 499 aa13.3□□□□□ -0.28
SHMT2-229ENST00000557348 TMEM86AQ8N2M4 240 aa13.3□□□□□ -0.28
SHMT2-229ENST00000557348 OR6B3Q8NGW1 331 aa13.3□□□□□ -0.28
SHMT2-229ENST00000557348 CCHCR1Q8TD31 782 aa13.3□□□□□ -0.28
SHMT2-229ENST00000557348 C18orf25Q96B23 403 aaPredicted RBP13.3□□□□□ -0.28
SHMT2-229ENST00000557348 GLT1D1Q96MS3 346 aa13.3□□□□□ -0.28
SHMT2-229ENST00000557348 PPP1R10Q96QC0 940 aaKnown RBP13.3□□□□□ -0.28
SHMT2-229ENST00000557348 CPXM1Q96SM3 734 aa13.3□□□□□ -0.28
SHMT2-229ENST00000557348 TRIM7Q9C029 511 aa13.3□□□□□ -0.28
SHMT2-229ENST00000557348 RNF186Q9NXI6 227 aa13.3□□□□□ -0.28
SHMT2-229ENST00000557348 FAM170AA1A519 330 aa13.29□□□□□ -0.28
SHMT2-229ENST00000557348 A8MXQ7 604 aa13.29□□□□□ -0.28
SHMT2-229ENST00000557348 TJP3O95049 919 aa13.29□□□□□ -0.28
SHMT2-229ENST00000557348 THP07101 528 aa13.29□□□□□ -0.28
SHMT2-229ENST00000557348 PSMA2P25787 234 aa13.29□□□□□ -0.28
SHMT2-229ENST00000557348 SSTR3P32745 418 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-229ENST00000557348 VEGFBP49765 207 aa13.29□□□□□ -0.28
SHMT2-229ENST00000557348 RPL7AP62424 266 aaKnown RBP13.29□□□□□ -0.28
SHMT2-229ENST00000557348 NFX1Q12986 1120 aaKnown RBP13.29□□□□□ -0.28
SHMT2-229ENST00000557348 ITGA7Q13683 1181 aa13.29□□□□□ -0.28
SHMT2-229ENST00000557348 SOWAHAQ2M3V2 549 aa13.29□□□□□ -0.28
SHMT2-229ENST00000557348 GOLGA7BQ2TAP0 167 aa13.29□□□□□ -0.28
SHMT2-229ENST00000557348 C2CD6Q53TS8 623 aa13.29□□□□□ -0.28
SHMT2-229ENST00000557348 DUPD1Q68J44 220 aa13.29□□□□□ -0.28
SHMT2-229ENST00000557348 ATP6V1G3Q96LB4 118 aa13.29□□□□□ -0.28
SHMT2-229ENST00000557348 OSBPL8Q9BZF1 889 aa13.29□□□□□ -0.28
SHMT2-229ENST00000557348 ERVK-5Q9HDB9 667 aa13.29□□□□□ -0.28
SHMT2-229ENST00000557348 C5orf60A6NFR6 353 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 CHRNA1P02708 482 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 KRT1P04264 644 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 ERBB2P04626 1255 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 HSPA1AP0DMV8 641 aaKnown RBP13.28□□□□□ -0.28
SHMT2-229ENST00000557348 HSPA1BP0DMV9 641 aaKnown RBP13.28□□□□□ -0.28
SHMT2-229ENST00000557348 RARAP10276 462 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 NR1D1P20393 614 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 PCK1P35558 622 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 GNL1P36915 607 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-229ENST00000557348 HSPA9P38646 679 aaKnown RBP13.28□□□□□ -0.28
SHMT2-229ENST00000557348 THPOP40225 353 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 BST2Q10589 180 aaKnown RBP13.28□□□□□ -0.28
SHMT2-229ENST00000557348 SNCBQ16143 134 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 CCNG2Q16589 344 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 PKDCCQ504Y2 493 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 CEP85LQ5SZL2 805 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 CYP4A22Q5TCH4 519 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 CCDC121Q6ZUS5 278 aa13.28□□□□□ -0.28
SHMT2-229ENST00000557348 ARCQ7LC44 396 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms