RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 FGF13Q92913 245 aa12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 JAKMIP2Q96AA8 810 aa12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 TCEAL4Q96EI5 215 aa12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 MCRS1Q96EZ8 462 aa12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 SMARCD1Q96GM5 515 aa12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 PCMTD1Q96MG8 357 aaPredicted RBP12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 GCNAQ96QF7 691 aa12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 MYADMQ96S97 322 aa12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 ATXN3LQ9H3M9 355 aa12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 FAM124BQ9H5Z6 455 aaPredicted RBP12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 CBX8Q9HC52 389 aa12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 ZNF334Q9HCZ1 680 aaPredicted RBP12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 LIMA1Q9UHB6 759 aaKnown RBP12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 USTQ9Y2C2 406 aa12.16□□□□□ -0.46
CCDC88C-212ENST00000556767 DENND4AQ7Z401 1863 aa12.15□□□□□ -0.46
CCDC88C-212ENST00000556767 A0A1W2PRU2 124 aa12.15□□□□□ -0.46
CCDC88C-212ENST00000556767 LOC730098B7Z3J9 87 aa12.15□□□□□ -0.46
CCDC88C-212ENST00000556767 GOLGA6L19H0YKK7 550 aa12.15□□□□□ -0.46
CCDC88C-212ENST00000556767 FAM200BP0CF97 657 aa12.15□□□□□ -0.46
CCDC88C-212ENST00000556767 ATP1A3P13637 1013 aa12.15□□□□□ -0.46
CCDC88C-212ENST00000556767 CEBPBP17676 345 aa12.15□□□□□ -0.46
CCDC88C-212ENST00000556767 CCR2P41597 374 aa12.15□□□□□ -0.46
CCDC88C-212ENST00000556767 CACNA2D1P54289 1103 aa12.15□□□□□ -0.46
CCDC88C-212ENST00000556767 MAP3K7CLP57077 242 aa12.15□□□□□ -0.46
CCDC88C-212ENST00000556767 TEAD2Q15562 447 aa12.15□□□□□ -0.46
CCDC88C-212ENST00000556767 DENND5BQ6ZUT9 1274 aa12.15□□□□□ -0.46
CCDC88C-212ENST00000556767 PAQR9Q6ZVX9 377 aa12.15□□□□□ -0.46
CCDC88C-212ENST00000556767 LUZP1Q86V48 1076 aa12.15□□□□□ -0.46
CCDC88C-212ENST00000556767 PLCD3Q8N3E9 789 aa12.15□□□□□ -0.46
CCDC88C-212ENST00000556767 RBBP8NLQ8NC74 664 aaPredicted RBP12.15□□□□□ -0.46
CCDC88C-212ENST00000556767 ST13P5Q8NFI4 369 aaPredicted RBP12.15□□□□□ -0.46
CCDC88C-212ENST00000556767 C8orf48Q96LL4 319 aa12.15□□□□□ -0.46
CCDC88C-212ENST00000556767 FAM81BQ96LP2 452 aa12.15□□□□□ -0.46
CCDC88C-212ENST00000556767 KREMEN1Q96MU8 473 aa12.15□□□□□ -0.46
CCDC88C-212ENST00000556767 KCNK16Q96T55 309 aa12.15□□□□□ -0.46
CCDC88C-212ENST00000556767 HNRNPABQ99729 332 aaKnown RBP12.15□□□□□ -0.46
CCDC88C-212ENST00000556767 LSM14BQ9BX40 385 aaKnown RBP12.15□□□□□ -0.46
CCDC88C-212ENST00000556767 COL25A1Q9BXS0 654 aaPredicted RBP12.15□□□□□ -0.46
CCDC88C-212ENST00000556767 SLITRK6Q9H5Y7 841 aa12.15□□□□□ -0.46
CCDC88C-212ENST00000556767 CD320Q9NPF0 282 aa12.15□□□□□ -0.46
CCDC88C-212ENST00000556767 DMAP1Q9NPF5 467 aaPredicted RBP12.15□□□□□ -0.46
CCDC88C-212ENST00000556767 AVENQ9NQS1 362 aaPredicted RBP12.15□□□□□ -0.46
CCDC88C-212ENST00000556767 APEX2Q9UBZ4 518 aa12.15□□□□□ -0.46
CCDC88C-212ENST00000556767 LIMD1Q9UGP4 676 aa12.15□□□□□ -0.46
CCDC88C-212ENST00000556767 DNAJC12Q9UKB3 198 aa12.15□□□□□ -0.46
CCDC88C-212ENST00000556767 CDH7Q9ULB5 785 aa12.15□□□□□ -0.46
CCDC88C-212ENST00000556767 C19orf67A6NJJ6 358 aa12.14□□□□□ -0.47
CCDC88C-212ENST00000556767 NOL4O94818 638 aa12.14□□□□□ -0.47
CCDC88C-212ENST00000556767 FGF19O95750 216 aa12.14□□□□□ -0.47
CCDC88C-212ENST00000556767 CAVIN2O95810 425 aa12.14□□□□□ -0.47
CCDC88C-212ENST00000556767 LAMP2P13473 410 aa12.14□□□□□ -0.47
CCDC88C-212ENST00000556767 ZNF18P17022 549 aa12.14□□□□□ -0.47
CCDC88C-212ENST00000556767 ACO1P21399 889 aaKnown RBP12.14□□□□□ -0.47
CCDC88C-212ENST00000556767 CDC25CP30307 473 aa12.14□□□□□ -0.47
CCDC88C-212ENST00000556767 EPHA5P54756 1037 aa12.14□□□□□ -0.47
CCDC88C-212ENST00000556767 UBXN1Q04323 297 aa12.14□□□□□ -0.47
CCDC88C-212ENST00000556767 KCNMA1Q12791 1236 aa12.14□□□□□ -0.47
CCDC88C-212ENST00000556767 IQCB1Q15051 598 aa12.14□□□□□ -0.47
CCDC88C-212ENST00000556767 FILIP1LQ4L180 1135 aa12.14□□□□□ -0.47
CCDC88C-212ENST00000556767 ARHGAP15Q53QZ3 475 aa12.14□□□□□ -0.47
CCDC88C-212ENST00000556767 SGO2Q562F6 1265 aa12.14□□□□□ -0.47
CCDC88C-212ENST00000556767 PRSS36Q5K4E3 855 aa12.14□□□□□ -0.47
CCDC88C-212ENST00000556767 PPP1R26Q5T8A7 1209 aaPredicted RBP12.14□□□□□ -0.47
CCDC88C-212ENST00000556767 ENOSF1Q7L5Y1 443 aa12.14□□□□□ -0.47
CCDC88C-212ENST00000556767 TMC8Q8IU68 726 aa12.14□□□□□ -0.47
CCDC88C-212ENST00000556767 RNF135Q8IUD6 432 aa12.14□□□□□ -0.47
CCDC88C-212ENST00000556767 NPAS3Q8IXF0 933 aa12.14□□□□□ -0.47
CCDC88C-212ENST00000556767 ZDHHC14Q8IZN3 488 aa12.14□□□□□ -0.47
CCDC88C-212ENST00000556767 UBR7Q8N806 425 aa12.14□□□□□ -0.47
CCDC88C-212ENST00000556767 SHKBP1Q8TBC3 707 aa12.14□□□□□ -0.47
CCDC88C-212ENST00000556767 SPATA17Q96L03 361 aa12.14□□□□□ -0.47
CCDC88C-212ENST00000556767 LRRC3Q9BY71 257 aa12.14□□□□□ -0.47
CCDC88C-212ENST00000556767 HSD3B7Q9H2F3 369 aa12.14□□□□□ -0.47
CCDC88C-212ENST00000556767 TSPY26PQ9H489 355 aa12.14□□□□□ -0.47
CCDC88C-212ENST00000556767 EHD2Q9NZN4 543 aa12.14□□□□□ -0.47
CCDC88C-212ENST00000556767 UXTQ9UBK9 157 aaPredicted RBP12.14□□□□□ -0.47
CCDC88C-212ENST00000556767 PTPRDP23468 1912 aa12.13□□□□□ -0.47
CCDC88C-212ENST00000556767 MYH10P35580 1976 aa12.13□□□□□ -0.47
CCDC88C-212ENST00000556767 LGALS16A8MUM7 142 aa12.13□□□□□ -0.47
CCDC88C-212ENST00000556767 RNF225M0QZC1 329 aaPredicted RBP12.13□□□□□ -0.47
CCDC88C-212ENST00000556767 BEST1O76090 585 aa12.13□□□□□ -0.47
CCDC88C-212ENST00000556767 SERPINC1P01008 464 aa12.13□□□□□ -0.47
CCDC88C-212ENST00000556767 ASGR2P07307 311 aa12.13□□□□□ -0.47
CCDC88C-212ENST00000556767 PAEPP09466 180 aa12.13□□□□□ -0.47
CCDC88C-212ENST00000556767 VDRP11473 427 aa12.13□□□□□ -0.47
CCDC88C-212ENST00000556767 HMGA1P17096 107 aaKnown RBP12.13□□□□□ -0.47
CCDC88C-212ENST00000556767 SLC8A3P57103 927 aa12.13□□□□□ -0.47
CCDC88C-212ENST00000556767 CYP4F8P98187 520 aa12.13□□□□□ -0.47
CCDC88C-212ENST00000556767 RAPGEF1Q13905 1077 aa12.13□□□□□ -0.47
CCDC88C-212ENST00000556767 GOLGA7BQ2TAP0 167 aa12.13□□□□□ -0.47
CCDC88C-212ENST00000556767 GPR158Q5T848 1215 aa12.13□□□□□ -0.47
CCDC88C-212ENST00000556767 GAREM2Q75VX8 874 aa12.13□□□□□ -0.47
CCDC88C-212ENST00000556767 NUP93Q8N1F7 819 aa12.13□□□□□ -0.47
CCDC88C-212ENST00000556767 MRPS31Q92665 395 aaKnown RBP12.13□□□□□ -0.47
CCDC88C-212ENST00000556767 SMOQ99835 787 aa12.13□□□□□ -0.47
CCDC88C-212ENST00000556767 SIX2Q9NPC8 291 aa12.13□□□□□ -0.47
CCDC88C-212ENST00000556767 TMEM30AQ9NV96 361 aa12.13□□□□□ -0.47
CCDC88C-212ENST00000556767 HESX1Q9UBX0 185 aa12.13□□□□□ -0.47
CCDC88C-212ENST00000556767 KIAA1257Q9ULG3 409 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms