RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	SCN4B	Q8IWT1	228 aa		13.58	□□□□□ -0.24
SHMT2-223	ENST00000556689	SPATA18	Q8TC71	538 aa		13.58	□□□□□ -0.24
SHMT2-223	ENST00000556689	PIGK	Q92643	395 aa		13.58	□□□□□ -0.24
SHMT2-223	ENST00000556689	FUBP3	Q96I24	572 aa	Known RBP eCLIP	13.58	□□□□□ -0.24
SHMT2-223	ENST00000556689	CNOT6L	Q96LI5	555 aa	Known RBP	13.58	□□□□□ -0.24
SHMT2-223	ENST00000556689	PKMYT1	Q99640	499 aa		13.58	□□□□□ -0.24
SHMT2-223	ENST00000556689	FAM213A	Q9BRX8	229 aa		13.58	□□□□□ -0.24
SHMT2-223	ENST00000556689	IKZF4	Q9H2S9	585 aa		13.58	□□□□□ -0.24
SHMT2-223	ENST00000556689	GDAP2	Q9NXN4	497 aa		13.58	□□□□□ -0.24
SHMT2-223	ENST00000556689	MMP17	Q9ULZ9	603 aa		13.58	□□□□□ -0.24
SHMT2-223	ENST00000556689	ARHGAP26	Q9UNA1	814 aa		13.58	□□□□□ -0.24
SHMT2-223	ENST00000556689	ASPM	Q8IZT6	3477 aa		13.58	□□□□□ -0.24
SHMT2-223	ENST00000556689	SPAG17	Q6Q759	2223 aa		13.58	□□□□□ -0.24
SHMT2-223	ENST00000556689	CACNA1G	O43497	2377 aa		13.57	□□□□□ -0.24
SHMT2-223	ENST00000556689	MYMK	A6NI61	221 aa		13.57	□□□□□ -0.24
SHMT2-223	ENST00000556689	TOP3B	O95985	862 aa	Known RBP	13.57	□□□□□ -0.24
SHMT2-223	ENST00000556689	LDHA	P00338	332 aa	Known RBP	13.57	□□□□□ -0.24
SHMT2-223	ENST00000556689	BCKDHB	P21953	392 aa		13.57	□□□□□ -0.24
SHMT2-223	ENST00000556689	PCSK1	P29120	753 aa		13.57	□□□□□ -0.24
SHMT2-223	ENST00000556689	LONP1	P36776	959 aa	Known RBP	13.57	□□□□□ -0.24
SHMT2-223	ENST00000556689	OPRD1	P41143	372 aa		13.57	□□□□□ -0.24
SHMT2-223	ENST00000556689	MRPS21	P82921	87 aa	Known RBP	13.57	□□□□□ -0.24
SHMT2-223	ENST00000556689	RBP5	P82980	135 aa		13.57	□□□□□ -0.24
SHMT2-223	ENST00000556689	LMAN2	Q12907	356 aa		13.57	□□□□□ -0.24
SHMT2-223	ENST00000556689	LPCAT2	Q7L5N7	544 aa		13.57	□□□□□ -0.24
SHMT2-223	ENST00000556689	TTC30A	Q86WT1	665 aa		13.57	□□□□□ -0.24
SHMT2-223	ENST00000556689	CCDC33	Q8N5R6	958 aa		13.57	□□□□□ -0.24
SHMT2-223	ENST00000556689	LRRC52	Q8N7C0	313 aa		13.57	□□□□□ -0.24
SHMT2-223	ENST00000556689	C1orf127	Q8N9H9	656 aa		13.57	□□□□□ -0.24
SHMT2-223	ENST00000556689	LARP4B	Q92615	738 aa	Known RBP	13.57	□□□□□ -0.24
SHMT2-223	ENST00000556689	HVCN1	Q96D96	273 aa		13.57	□□□□□ -0.24
SHMT2-223	ENST00000556689	KIF2C	Q99661	725 aa		13.57	□□□□□ -0.24
SHMT2-223	ENST00000556689	SCNM1	Q9BWG6	230 aa		13.57	□□□□□ -0.24
SHMT2-223	ENST00000556689	NUSAP1	Q9BXS6	441 aa	Known RBP	13.57	□□□□□ -0.24
SHMT2-223	ENST00000556689	EXOC7	Q9UPT5	735 aa		13.57	□□□□□ -0.24
SHMT2-223	ENST00000556689	SNX9	Q9Y5X1	595 aa		13.57	□□□□□ -0.24
SHMT2-223	ENST00000556689	MYH11	P35749	1972 aa		13.57	□□□□□ -0.24
SHMT2-223	ENST00000556689	SCN1A	P35498	2009 aa		13.57	□□□□□ -0.24
SHMT2-223	ENST00000556689	GABRD	O14764	452 aa		13.56	□□□□□ -0.24
SHMT2-223	ENST00000556689	MAP3K13	O43283	966 aa		13.56	□□□□□ -0.24
SHMT2-223	ENST00000556689	KRT19	P08727	400 aa		13.56	□□□□□ -0.24
SHMT2-223	ENST00000556689	PFKL	P17858	780 aa		13.56	□□□□□ -0.24
SHMT2-223	ENST00000556689	MAGEA11	P43364	429 aa		13.56	□□□□□ -0.24
SHMT2-223	ENST00000556689	WNT7B	P56706	349 aa		13.56	□□□□□ -0.24
SHMT2-223	ENST00000556689	COL9A2	Q14055	689 aa	Predicted RBP	13.56	□□□□□ -0.24
SHMT2-223	ENST00000556689	FAM171B	Q6P995	826 aa		13.56	□□□□□ -0.24
SHMT2-223	ENST00000556689	C4orf50	Q6ZRC1	276 aa		13.56	□□□□□ -0.24
SHMT2-223	ENST00000556689	DYM	Q7RTS9	669 aa		13.56	□□□□□ -0.24
SHMT2-223	ENST00000556689	SFR1	Q86XK3	245 aa		13.56	□□□□□ -0.24
SHMT2-223	ENST00000556689	BRSK2	Q8IWQ3	736 aa		13.56	□□□□□ -0.24
SHMT2-223	ENST00000556689	ADGRF2	Q8IZF7	708 aa		13.56	□□□□□ -0.24
SHMT2-223	ENST00000556689	ADGRG2	Q8IZP9	1017 aa		13.56	□□□□□ -0.24
SHMT2-223	ENST00000556689	TOP6BL	Q8N6T0	577 aa		13.56	□□□□□ -0.24
SHMT2-223	ENST00000556689	DEFB124	Q8NES8	71 aa		13.56	□□□□□ -0.24
SHMT2-223	ENST00000556689	MDGA1	Q8NFP4	955 aa		13.56	□□□□□ -0.24
SHMT2-223	ENST00000556689	OLIG1	Q8TAK6	271 aa		13.56	□□□□□ -0.24
SHMT2-223	ENST00000556689	STRA6	Q9BX79	667 aa		13.56	□□□□□ -0.24
SHMT2-223	ENST00000556689	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	13.56	□□□□□ -0.24
SHMT2-223	ENST00000556689	SLC32A1	Q9H598	525 aa		13.56	□□□□□ -0.24
SHMT2-223	ENST00000556689	MRPL44	Q9H9J2	332 aa	Known RBP	13.56	□□□□□ -0.24
SHMT2-223	ENST00000556689	UPF2	Q9HAU5	1272 aa	Known RBP	13.56	□□□□□ -0.24
SHMT2-223	ENST00000556689	TRPM5	Q9NZQ8	1165 aa		13.56	□□□□□ -0.24
SHMT2-223	ENST00000556689	MAGEC2	Q9UBF1	373 aa	Predicted RBP	13.56	□□□□□ -0.24
SHMT2-223	ENST00000556689	EVL	Q9UI08	416 aa	Predicted RBP	13.56	□□□□□ -0.24
SHMT2-223	ENST00000556689	ITGA11	Q9UKX5	1188 aa		13.56	□□□□□ -0.24
SHMT2-223	ENST00000556689	R3HCC1	Q9Y3T6	440 aa	Known RBP	13.56	□□□□□ -0.24
SHMT2-223	ENST00000556689	ANTXRL	A6NF34	631 aa		13.55	□□□□□ -0.24
SHMT2-223	ENST00000556689	LEFTY2	O00292	366 aa		13.55	□□□□□ -0.24
SHMT2-223	ENST00000556689	TNFRSF10B	O14763	440 aa		13.55	□□□□□ -0.24
SHMT2-223	ENST00000556689	PPP1R37	O75864	691 aa		13.55	□□□□□ -0.24
SHMT2-223	ENST00000556689	BMP15	O95972	392 aa		13.55	□□□□□ -0.24
SHMT2-223	ENST00000556689	GRIK1	P39086	918 aa		13.55	□□□□□ -0.24
SHMT2-223	ENST00000556689	ZXDB	P98169	803 aa		13.55	□□□□□ -0.24
SHMT2-223	ENST00000556689	GRIN1	Q05586	938 aa		13.55	□□□□□ -0.24
SHMT2-223	ENST00000556689	KCNA1	Q09470	495 aa		13.55	□□□□□ -0.24
SHMT2-223	ENST00000556689	SOWAHA	Q2M3V2	549 aa		13.55	□□□□□ -0.24
SHMT2-223	ENST00000556689	TRIM61	Q5EBN2	209 aa		13.55	□□□□□ -0.24
SHMT2-223	ENST00000556689	SCARA3	Q6AZY7	606 aa		13.55	□□□□□ -0.24
SHMT2-223	ENST00000556689	VSTM1	Q6UX27	236 aa		13.55	□□□□□ -0.24
SHMT2-223	ENST00000556689	TMEM92	Q6UXU6	159 aa		13.55	□□□□□ -0.24
SHMT2-223	ENST00000556689	DPH6	Q7L8W6	267 aa		13.55	□□□□□ -0.24
SHMT2-223	ENST00000556689	OSTM1	Q86WC4	334 aa		13.55	□□□□□ -0.24
SHMT2-223	ENST00000556689	KIAA1958	Q8N8K9	716 aa		13.55	□□□□□ -0.24
SHMT2-223	ENST00000556689	CXorf38	Q8TB03	319 aa		13.55	□□□□□ -0.24
SHMT2-223	ENST00000556689	GATA6	Q92908	595 aa		13.55	□□□□□ -0.24
SHMT2-223	ENST00000556689	SAAL1	Q96ER3	474 aa		13.55	□□□□□ -0.24
SHMT2-223	ENST00000556689	SPATA17	Q96L03	361 aa		13.55	□□□□□ -0.24
SHMT2-223	ENST00000556689	CEP295NL	Q96MC4	621 aa		13.55	□□□□□ -0.24
SHMT2-223	ENST00000556689	ACCS	Q96QU6	501 aa		13.55	□□□□□ -0.24
SHMT2-223	ENST00000556689	RBAK	Q9NYW8	714 aa	Predicted RBP	13.55	□□□□□ -0.24
SHMT2-223	ENST00000556689	SEL1L	Q9UBV2	794 aa		13.55	□□□□□ -0.24
SHMT2-223	ENST00000556689	CIZ1	Q9ULV3	898 aa	Predicted RBP	13.55	□□□□□ -0.24
SHMT2-223	ENST00000556689	EML5	Q05BV3	1969 aa		13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	SPEG	Q15772	3267 aa		13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	MSANTD3-TMEFF1	A0A0A6YYJ0	341 aa		13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	SRRM3	A6NNA2	597 aa	Predicted RBP	13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	SLC9A3R1	O14745	358 aa	Predicted RBP	13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	HCRT	O43612	131 aa		13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	ATP2C2	O75185	946 aa		13.54	□□□□□ -0.24
SHMT2-223	ENST00000556689	GART	P22102	1010 aa		13.54	□□□□□ -0.24

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