RNA–Protein interactions for RNA: ENST00000556339.5

ATXN3-240, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 525 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-240ENST00000556339 H2AFYO75367 372 aaKnown RBP4.52□□□□□ -1.69
ATXN3-240ENST00000556339 SNAI1O95863 264 aaPredicted RBP4.52□□□□□ -1.69
ATXN3-240ENST00000556339 MPIG6BO95866 241 aa4.52□□□□□ -1.69
ATXN3-240ENST00000556339 TIMP1P01033 207 aa4.52□□□□□ -1.69
ATXN3-240ENST00000556339 ASGR1P07306 291 aa4.52□□□□□ -1.69
ATXN3-240ENST00000556339 MX1P20591 662 aa4.52□□□□□ -1.69
ATXN3-240ENST00000556339 APEX1P27695 318 aaKnown RBP4.52□□□□□ -1.69
ATXN3-240ENST00000556339 MCM5P33992 734 aa4.52□□□□□ -1.69
ATXN3-240ENST00000556339 MRPL12P52815 198 aaKnown RBP4.52□□□□□ -1.69
ATXN3-240ENST00000556339 HGFACQ04756 655 aa4.52□□□□□ -1.69
ATXN3-240ENST00000556339 CCDC173Q0VFZ6 552 aa4.52□□□□□ -1.69
ATXN3-240ENST00000556339 PPIGQ13427 754 aaKnown RBP eCLIP4.52□□□□□ -1.69
ATXN3-240ENST00000556339 MCMDC2Q4G0Z9 681 aa4.52□□□□□ -1.69
ATXN3-240ENST00000556339 BRDTQ58F21 947 aaPredicted RBP4.52□□□□□ -1.69
ATXN3-240ENST00000556339 C9orf50Q5SZB4 431 aa4.52□□□□□ -1.69
ATXN3-240ENST00000556339 TTC22Q5TAA0 569 aa4.52□□□□□ -1.69
ATXN3-240ENST00000556339 FAM109BQ6ICB4 259 aaPredicted RBP4.52□□□□□ -1.69
ATXN3-240ENST00000556339 ARMCX2Q7L311 632 aa4.52□□□□□ -1.69
ATXN3-240ENST00000556339 TMEM199Q8N511 208 aa4.52□□□□□ -1.69
ATXN3-240ENST00000556339 GMCL1P1Q8NEA9 526 aa4.52□□□□□ -1.69
ATXN3-240ENST00000556339 PPM1EQ8WY54 764 aa4.52□□□□□ -1.69
ATXN3-240ENST00000556339 GCDHQ92947 438 aaPredicted RBP4.52□□□□□ -1.69
ATXN3-240ENST00000556339 TNPO1Q92973 898 aaKnown RBP4.52□□□□□ -1.69
ATXN3-240ENST00000556339 EVI5LQ96CN4 794 aa4.52□□□□□ -1.69
ATXN3-240ENST00000556339 TRIM44Q96DX7 344 aaPredicted RBP4.52□□□□□ -1.69
ATXN3-240ENST00000556339 PPP1R9BQ96SB3 815 aa4.52□□□□□ -1.69
ATXN3-240ENST00000556339 MPHOSPH6Q99547 160 aaKnown RBP4.52□□□□□ -1.69
ATXN3-240ENST00000556339 CDX2Q99626 313 aaPredicted RBP4.52□□□□□ -1.69
ATXN3-240ENST00000556339 MTIF3Q9H2K0 278 aaKnown RBP4.52□□□□□ -1.69
ATXN3-240ENST00000556339 SLC38A10Q9HBR0 1119 aa4.52□□□□□ -1.69
ATXN3-240ENST00000556339 RNF146Q9NTX7 359 aa4.52□□□□□ -1.69
ATXN3-240ENST00000556339 CEP72Q9P209 647 aa4.52□□□□□ -1.69
ATXN3-240ENST00000556339 NDOR1Q9UHB4 597 aa4.52□□□□□ -1.69
ATXN3-240ENST00000556339 MSRAQ9UJ68 235 aa4.52□□□□□ -1.69
ATXN3-240ENST00000556339 CCPG1Q9ULG6 757 aa4.52□□□□□ -1.69
ATXN3-240ENST00000556339 DMRT1Q9Y5R6 373 aa4.52□□□□□ -1.69
ATXN3-240ENST00000556339 COL6A3P12111 3177 aa4.52□□□□□ -1.69
ATXN3-240ENST00000556339 RLFQ13129 1914 aa4.52□□□□□ -1.69
ATXN3-240ENST00000556339 NCOR1O75376 2440 aa4.52□□□□□ -1.69
ATXN3-240ENST00000556339 BAZ2BQ9UIF8 2168 aaKnown RBP4.51□□□□□ -1.69
ATXN3-240ENST00000556339 ELP1O95163 1332 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 MROH7Q68CQ1 1323 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 TRIP12Q14669 1992 aaPredicted RBP4.51□□□□□ -1.69
ATXN3-240ENST00000556339 TMEM191CA6NGB0 347 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 KIAA0355O15063 1070 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 DHX16O60231 1041 aaKnown RBP4.51□□□□□ -1.69
ATXN3-240ENST00000556339 NMT2O60551 498 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 CABYRO75952 493 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 MBD3O95983 291 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 FGBP02675 491 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 MYL3P08590 195 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 FOSL2P15408 326 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 CALML3P27482 149 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 SLC16A2P36021 539 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 MAN2A2P49641 1150 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 OAZ1P54368 228 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 SESN2P58004 480 aaPredicted RBP4.51□□□□□ -1.69
ATXN3-240ENST00000556339 HAND2P61296 217 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 SMAD3P84022 425 aaKnown RBP4.51□□□□□ -1.69
ATXN3-240ENST00000556339 ATP2C1P98194 919 aaPredicted RBP4.51□□□□□ -1.69
ATXN3-240ENST00000556339 BEX3Q00994 111 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 ITGA7Q13683 1181 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 BAATQ14032 418 aaPredicted RBP4.51□□□□□ -1.69
ATXN3-240ENST00000556339 SYDE2Q5VT97 1194 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 IQSEC1Q6DN90 963 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 KLHDC10Q6PID8 442 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 MFSD6Q6ZSS7 791 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 ZNF627Q7L945 461 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 RPUSD2Q8IZ73 545 aaKnown RBP4.51□□□□□ -1.69
ATXN3-240ENST00000556339 SLC43A3Q8NBI5 491 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 KLHDC9Q8NEP7 349 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 REPS2Q8NFH8 660 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 MAFAQ8NHW3 353 aaPredicted RBP4.51□□□□□ -1.69
ATXN3-240ENST00000556339 OTUD7AQ8TE49 926 aaPredicted RBP4.51□□□□□ -1.69
ATXN3-240ENST00000556339 LPPQ93052 612 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 MIEF2Q96C03 454 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 RPL10LQ96L21 214 aaKnown RBP4.51□□□□□ -1.69
ATXN3-240ENST00000556339 NRDE2Q9H7Z3 1164 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 VAT1LQ9HCJ6 419 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 HELLSQ9NRZ9 838 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 ADD3Q9UEY8 706 aaKnown RBP4.51□□□□□ -1.69
ATXN3-240ENST00000556339 SYNPO2Q9UMS6 1093 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 COQ6Q9Y2Z9 468 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 VWA7Q9Y334 891 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 SH3BP1Q9Y3L3 701 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 ASB1Q9Y576 335 aa4.51□□□□□ -1.69
ATXN3-240ENST00000556339 FRMPD2Q68DX3 1309 aaPredicted RBP4.5□□□□□ -1.69
ATXN3-240ENST00000556339 SYNRGQ9UMZ2 1314 aa4.5□□□□□ -1.69
ATXN3-240ENST00000556339 KAT6AQ92794 2004 aa4.5□□□□□ -1.69
ATXN3-240ENST00000556339 IGKV6D-41A0A0C4DH26 115 aa4.5□□□□□ -1.69
ATXN3-240ENST00000556339 SLC12A8A0AV02 714 aa4.5□□□□□ -1.69
ATXN3-240ENST00000556339 PMS2P1A4D2B8 440 aa4.5□□□□□ -1.69
ATXN3-240ENST00000556339 MYADML2A6NDP7 307 aa4.5□□□□□ -1.69
ATXN3-240ENST00000556339 ZNF213O14771 459 aa4.5□□□□□ -1.69
ATXN3-240ENST00000556339 ATP2A1O14983 1001 aa4.5□□□□□ -1.69
ATXN3-240ENST00000556339 PLA2G6O60733 806 aa4.5□□□□□ -1.69
ATXN3-240ENST00000556339 BAG4O95429 457 aaKnown RBP4.5□□□□□ -1.69
ATXN3-240ENST00000556339 FGAP02671 866 aa4.5□□□□□ -1.69
ATXN3-240ENST00000556339 TPM2P07951 284 aa4.5□□□□□ -1.69
ATXN3-240ENST00000556339 TOP1P11387 765 aaKnown RBP4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms