RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 PSMA2P25787 234 aa12.3□□□□□ -0.44
SHMT2-212ENST00000554467 SLC1A1P43005 524 aa12.3□□□□□ -0.44
SHMT2-212ENST00000554467 YWHAEP62258 255 aaKnown RBP12.3□□□□□ -0.44
SHMT2-212ENST00000554467 DYNLT1P63172 113 aa12.3□□□□□ -0.44
SHMT2-212ENST00000554467 ADAM17P78536 824 aa12.3□□□□□ -0.44
SHMT2-212ENST00000554467 NFX1Q12986 1120 aaKnown RBP12.3□□□□□ -0.44
SHMT2-212ENST00000554467 ANKRD20A8PQ5CZ79 823 aa12.3□□□□□ -0.44
SHMT2-212ENST00000554467 MFSD7Q6UXD7 560 aa12.3□□□□□ -0.44
SHMT2-212ENST00000554467 FMO2Q99518 471 aa12.3□□□□□ -0.44
SHMT2-212ENST00000554467 OSBPL8Q9BZF1 889 aa12.3□□□□□ -0.44
SHMT2-212ENST00000554467 RAB17Q9H0T7 212 aa12.3□□□□□ -0.44
SHMT2-212ENST00000554467 SAE1Q9UBE0 346 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-212ENST00000554467 IP6K2Q9UHH9 426 aa12.3□□□□□ -0.44
SHMT2-212ENST00000554467 PCDHGC3Q9UN70 934 aa12.3□□□□□ -0.44
SHMT2-212ENST00000554467 C2CD2Q9Y426 696 aa12.3□□□□□ -0.44
SHMT2-212ENST00000554467 FSCN2O14926 492 aa12.3□□□□□ -0.44
SHMT2-212ENST00000554467 MDH1P40925 334 aaKnown RBP12.3□□□□□ -0.44
SHMT2-212ENST00000554467 AFF1P51825 1210 aaKnown RBP12.3□□□□□ -0.44
SHMT2-212ENST00000554467 SOX4Q06945 474 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-212ENST00000554467 IFFO1Q0D2I5 559 aa12.3□□□□□ -0.44
SHMT2-212ENST00000554467 TAF5Q15542 800 aa12.3□□□□□ -0.44
SHMT2-212ENST00000554467 DCAF4L1Q3SXM0 396 aa12.3□□□□□ -0.44
SHMT2-212ENST00000554467 TWF2Q6IBS0 349 aaKnown RBP12.3□□□□□ -0.44
SHMT2-212ENST00000554467 ZDHHC24Q6UX98 284 aa12.3□□□□□ -0.44
SHMT2-212ENST00000554467 MICALCLQ6ZW33 695 aa12.3□□□□□ -0.44
SHMT2-212ENST00000554467 MAB21L3Q8N8X9 362 aa12.3□□□□□ -0.44
SHMT2-212ENST00000554467 PWWP2AQ96N64 755 aa12.3□□□□□ -0.44
SHMT2-212ENST00000554467 C10orf88Q9H8K7 445 aa12.3□□□□□ -0.44
SHMT2-212ENST00000554467 GRHL1Q9NZI5 618 aa12.3□□□□□ -0.44
SHMT2-212ENST00000554467 TSPAN16Q9UKR8 245 aa12.3□□□□□ -0.44
SHMT2-212ENST00000554467 LRRD1A4D1F6 860 aa12.3□□□□□ -0.44
SHMT2-212ENST00000554467 BHMG1C9JSJ3 638 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-212ENST00000554467 HAS3O00219 553 aa12.3□□□□□ -0.44
SHMT2-212ENST00000554467 AOC2O75106 756 aa12.3□□□□□ -0.44
SHMT2-212ENST00000554467 KRT17Q04695 432 aa12.3□□□□□ -0.44
SHMT2-212ENST00000554467 PRKCZQ05513 592 aa12.3□□□□□ -0.44
SHMT2-212ENST00000554467 PPP1R26Q5T8A7 1209 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-212ENST00000554467 TMC3Q7Z5M5 1100 aa12.3□□□□□ -0.44
SHMT2-212ENST00000554467 OR6B3Q8NGW1 331 aa12.3□□□□□ -0.44
SHMT2-212ENST00000554467 ZDHHC18Q9NUE0 388 aa12.3□□□□□ -0.44
SHMT2-212ENST00000554467 BARX2Q9UMQ3 279 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-212ENST00000554467 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.3□□□□□ -0.44
SHMT2-212ENST00000554467 SH3BP1Q9Y3L3 701 aa12.3□□□□□ -0.44
SHMT2-212ENST00000554467 SPTLC1O15269 473 aa12.29□□□□□ -0.44
SHMT2-212ENST00000554467 MGRN1O60291 552 aa12.29□□□□□ -0.44
SHMT2-212ENST00000554467 P4HA1P13674 534 aa12.29□□□□□ -0.44
SHMT2-212ENST00000554467 HSPA9P38646 679 aaKnown RBP12.29□□□□□ -0.44
SHMT2-212ENST00000554467 DHX34Q14147 1143 aaKnown RBP12.29□□□□□ -0.44
SHMT2-212ENST00000554467 CDO1Q16878 200 aa12.29□□□□□ -0.44
SHMT2-212ENST00000554467 GOLGA7BQ2TAP0 167 aa12.29□□□□□ -0.44
SHMT2-212ENST00000554467 XYLT1Q86Y38 959 aa12.29□□□□□ -0.44
SHMT2-212ENST00000554467 ARFGAP1Q8N6T3 406 aa12.29□□□□□ -0.44
SHMT2-212ENST00000554467 C3orf20Q8ND61 904 aa12.29□□□□□ -0.44
SHMT2-212ENST00000554467 FAM114A2Q9NRY5 505 aa12.29□□□□□ -0.44
SHMT2-212ENST00000554467 ASIC3Q9UHC3 531 aa12.29□□□□□ -0.44
SHMT2-212ENST00000554467 PCYOX1Q9UHG3 505 aa12.29□□□□□ -0.44
SHMT2-212ENST00000554467 GGA2Q9UJY4 613 aa12.29□□□□□ -0.44
SHMT2-212ENST00000554467 SMIM28A0A1B0GU29 152 aa12.29□□□□□ -0.44
SHMT2-212ENST00000554467 E5RJQ4 531 aa12.29□□□□□ -0.44
SHMT2-212ENST00000554467 MED7O43513 233 aa12.29□□□□□ -0.44
SHMT2-212ENST00000554467 AP1G2O75843 785 aa12.29□□□□□ -0.44
SHMT2-212ENST00000554467 ECEL1O95672 775 aa12.29□□□□□ -0.44
SHMT2-212ENST00000554467 AKR1A1P14550 325 aa12.29□□□□□ -0.44
SHMT2-212ENST00000554467 IL1R2P27930 398 aa12.29□□□□□ -0.44
SHMT2-212ENST00000554467 ATICP31939 592 aa12.29□□□□□ -0.44
SHMT2-212ENST00000554467 MYO1EQ12965 1108 aa12.29□□□□□ -0.44
SHMT2-212ENST00000554467 PPP1R15BQ5SWA1 713 aa12.29□□□□□ -0.44
SHMT2-212ENST00000554467 FAM102AQ5T9C2 384 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-212ENST00000554467 ARMC2Q8NEN0 867 aa12.29□□□□□ -0.44
SHMT2-212ENST00000554467 SPDL1Q96EA4 605 aa12.29□□□□□ -0.44
SHMT2-212ENST00000554467 RASAL2Q9UJF2 1139 aa12.29□□□□□ -0.44
SHMT2-212ENST00000554467 PAEPP09466 180 aa12.28□□□□□ -0.44
SHMT2-212ENST00000554467 LMO2P25791 158 aa12.28□□□□□ -0.44
SHMT2-212ENST00000554467 GPD2P43304 727 aa12.28□□□□□ -0.44
SHMT2-212ENST00000554467 SCTRP47872 440 aa12.28□□□□□ -0.44
SHMT2-212ENST00000554467 UBXN11Q5T124 520 aa12.28□□□□□ -0.44
SHMT2-212ENST00000554467 GDF6Q6KF10 455 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-212ENST00000554467 TAB3Q8N5C8 712 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-212ENST00000554467 MICAL1Q8TDZ2 1067 aa12.28□□□□□ -0.44
SHMT2-212ENST00000554467 SOCS4Q8WXH5 440 aa12.28□□□□□ -0.44
SHMT2-212ENST00000554467 SEC14L1Q92503 715 aa12.28□□□□□ -0.44
SHMT2-212ENST00000554467 LPPQ93052 612 aa12.28□□□□□ -0.44
SHMT2-212ENST00000554467 TBC1D31Q96DN5 1066 aa12.28□□□□□ -0.44
SHMT2-212ENST00000554467 PLVAPQ9BX97 442 aa12.28□□□□□ -0.44
SHMT2-212ENST00000554467 NT5C1AQ9BXI3 368 aa12.28□□□□□ -0.44
SHMT2-212ENST00000554467 A6NNZ2 444 aa12.28□□□□□ -0.44
SHMT2-212ENST00000554467 PSTPIP1O43586 416 aa12.28□□□□□ -0.44
SHMT2-212ENST00000554467 CD48P09326 243 aa12.28□□□□□ -0.44
SHMT2-212ENST00000554467 MYZAPP0CAP1 466 aa12.28□□□□□ -0.44
SHMT2-212ENST00000554467 CCDC130P13994 396 aa12.28□□□□□ -0.44
SHMT2-212ENST00000554467 EZRP15311 586 aaKnown RBP12.28□□□□□ -0.44
SHMT2-212ENST00000554467 HSPA6P17066 643 aa12.28□□□□□ -0.44
SHMT2-212ENST00000554467 CDH5P33151 784 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-212ENST00000554467 GCKP35557 465 aa12.28□□□□□ -0.44
SHMT2-212ENST00000554467 ZKSCAN8Q15776 578 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-212ENST00000554467 TUBB8Q3ZCM7 444 aa12.28□□□□□ -0.44
SHMT2-212ENST00000554467 OR6B2Q6IFH4 312 aa12.28□□□□□ -0.44
SHMT2-212ENST00000554467 STAMBPL1Q96FJ0 436 aa12.28□□□□□ -0.44
SHMT2-212ENST00000554467 B3GNT5Q9BYG0 378 aa12.28□□□□□ -0.44
SHMT2-212ENST00000554467 DCLK3Q9C098 648 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms