RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 CTSHP09668 335 aa27.72■■■□□ 2.03
CCDC88C-205ENST00000553403 GNL1P36915 607 aaPredicted RBP27.72■■■□□ 2.03
CCDC88C-205ENST00000553403 SLC25A11Q02978 314 aaKnown RBP27.72■■■□□ 2.03
CCDC88C-205ENST00000553403 ODF2Q5BJF6 829 aa27.72■■■□□ 2.03
CCDC88C-205ENST00000553403 FAM102AQ5T9C2 384 aaPredicted RBP27.72■■■□□ 2.03
CCDC88C-205ENST00000553403 ZDHHC24Q6UX98 284 aa27.72■■■□□ 2.03
CCDC88C-205ENST00000553403 LRIG3Q6UXM1 1119 aa27.72■■■□□ 2.03
CCDC88C-205ENST00000553403 TTC30AQ86WT1 665 aa27.72■■■□□ 2.03
CCDC88C-205ENST00000553403 TOP6BLQ8N6T0 577 aa27.72■■■□□ 2.03
CCDC88C-205ENST00000553403 GOLGA6L1Q8N7Z2 621 aa27.72■■■□□ 2.03
CCDC88C-205ENST00000553403 ATL2Q8NHH9 583 aa27.72■■■□□ 2.03
CCDC88C-205ENST00000553403 GRIN2DO15399 1336 aa27.72■■■□□ 2.03
CCDC88C-205ENST00000553403 GOLGA8KD6RF30 607 aa27.72■■■□□ 2.03
CCDC88C-205ENST00000553403 LRCH4O75427 683 aa27.72■■■□□ 2.03
CCDC88C-205ENST00000553403 CABYRO75952 493 aa27.72■■■□□ 2.03
CCDC88C-205ENST00000553403 TJP3O95049 919 aa27.72■■■□□ 2.03
CCDC88C-205ENST00000553403 RPL21P46778 160 aaKnown RBP27.72■■■□□ 2.03
CCDC88C-205ENST00000553403 PTGISQ16647 500 aa27.72■■■□□ 2.03
CCDC88C-205ENST00000553403 ZFYVE27Q5T4F4 411 aa27.72■■■□□ 2.03
CCDC88C-205ENST00000553403 MAP3K21Q5TCX8 1036 aa27.72■■■□□ 2.03
CCDC88C-205ENST00000553403 OR6B2Q6IFH4 312 aa27.72■■■□□ 2.03
CCDC88C-205ENST00000553403 MFSD7Q6UXD7 560 aa27.72■■■□□ 2.03
CCDC88C-205ENST00000553403 TMC3Q7Z5M5 1100 aa27.72■■■□□ 2.03
CCDC88C-205ENST00000553403 ANKS1BQ7Z6G8 1248 aa27.72■■■□□ 2.03
CCDC88C-205ENST00000553403 SLC35F5Q8WV83 523 aa27.72■■■□□ 2.03
CCDC88C-205ENST00000553403 ASNSD1Q9NWL6 643 aa27.72■■■□□ 2.03
CCDC88C-205ENST00000553403 R3HDM2Q9Y2K5 976 aaKnown RBP27.72■■■□□ 2.03
CCDC88C-205ENST00000553403 E5RJQ4 531 aa27.71■■■□□ 2.03
CCDC88C-205ENST00000553403 HUS1O60921 280 aa27.71■■■□□ 2.03
CCDC88C-205ENST00000553403 FKTNO75072 461 aa27.71■■■□□ 2.03
CCDC88C-205ENST00000553403 FGFR1P11362 822 aa27.71■■■□□ 2.03
CCDC88C-205ENST00000553403 WARSP23381 471 aaKnown RBP27.71■■■□□ 2.03
CCDC88C-205ENST00000553403 LILRA4P59901 499 aa27.71■■■□□ 2.03
CCDC88C-205ENST00000553403 PPP1R7Q15435 360 aa27.71■■■□□ 2.03
CCDC88C-205ENST00000553403 FAM183BPQ6ZVS7 135 aa27.71■■■□□ 2.03
CCDC88C-205ENST00000553403 TMEM110Q86TL2 294 aa27.71■■■□□ 2.03
CCDC88C-205ENST00000553403 ARFGAP1Q8N6T3 406 aa27.71■■■□□ 2.03
CCDC88C-205ENST00000553403 EMC1Q8N766 993 aa27.71■■■□□ 2.03
CCDC88C-205ENST00000553403 RIN2Q8WYP3 895 aaPredicted RBP27.71■■■□□ 2.03
CCDC88C-205ENST00000553403 GOLGA2P5Q9HBQ8 144 aa27.71■■■□□ 2.03
CCDC88C-205ENST00000553403 FAM49BQ9NUQ9 324 aa27.71■■■□□ 2.03
CCDC88C-205ENST00000553403 EFR3BQ9Y2G0 817 aa27.71■■■□□ 2.03
CCDC88C-205ENST00000553403 PTPN22Q9Y2R2 807 aa27.71■■■□□ 2.03
CCDC88C-205ENST00000553403 GIT1Q9Y2X7 761 aa27.71■■■□□ 2.03
CCDC88C-205ENST00000553403 PI4K2BG5E9Z4 385 aa27.7■■■□□ 2.02
CCDC88C-205ENST00000553403 PPFIA2O75334 1257 aa27.7■■■□□ 2.02
CCDC88C-205ENST00000553403 FLT3P36888 993 aa27.7■■■□□ 2.02
CCDC88C-205ENST00000553403 HSD17B3P37058 310 aa27.7■■■□□ 2.02
CCDC88C-205ENST00000553403 ZNF143P52747 638 aaPredicted RBP27.7■■■□□ 2.02
CCDC88C-205ENST00000553403 SNX1Q13596 522 aa27.7■■■□□ 2.02
CCDC88C-205ENST00000553403 PTK6Q13882 451 aa27.7■■■□□ 2.02
CCDC88C-205ENST00000553403 TXNRD3NBQ6F5E7 133 aa27.7■■■□□ 2.02
CCDC88C-205ENST00000553403 MRPL10Q7Z7H8 261 aaKnown RBP27.7■■■□□ 2.02
CCDC88C-205ENST00000553403 ATG4AQ8WYN0 398 aa27.7■■■□□ 2.02
CCDC88C-205ENST00000553403 ZBTB9Q96C00 473 aa27.7■■■□□ 2.02
CCDC88C-205ENST00000553403 TXLNGYQ9BZA5 131 aa27.7■■■□□ 2.02
CCDC88C-205ENST00000553403 KLHL11Q9NVR0 708 aa27.7■■■□□ 2.02
CCDC88C-205ENST00000553403 DDX20Q9UHI6 824 aaKnown RBP27.7■■■□□ 2.02
CCDC88C-205ENST00000553403 RNF8O76064 485 aa27.69■■■□□ 2.02
CCDC88C-205ENST00000553403 GAS8O95995 478 aa27.69■■■□□ 2.02
CCDC88C-205ENST00000553403 GPD1P21695 349 aa27.69■■■□□ 2.02
CCDC88C-205ENST00000553403 THPOP40225 353 aa27.69■■■□□ 2.02
CCDC88C-205ENST00000553403 KRT17Q04695 432 aa27.69■■■□□ 2.02
CCDC88C-205ENST00000553403 PTK7Q13308 1070 aa27.69■■■□□ 2.02
CCDC88C-205ENST00000553403 TFDP3Q5H9I0 405 aa27.69■■■□□ 2.02
CCDC88C-205ENST00000553403 PMF1Q6P1K2 205 aa27.69■■■□□ 2.02
CCDC88C-205ENST00000553403 ZDHHC17Q8IUH5 632 aa27.69■■■□□ 2.02
CCDC88C-205ENST00000553403 ANKRD52Q8NB46 1076 aa27.69■■■□□ 2.02
CCDC88C-205ENST00000553403 RAPGEF5Q92565 580 aa27.69■■■□□ 2.02
CCDC88C-205ENST00000553403 CNPY3Q9BT09 278 aa27.69■■■□□ 2.02
CCDC88C-205ENST00000553403 TRAIPQ9BWF2 469 aa27.69■■■□□ 2.02
CCDC88C-205ENST00000553403 DPEP3Q9H4B8 488 aa27.69■■■□□ 2.02
CCDC88C-205ENST00000553403 CYLDQ9NQC7 956 aa27.69■■■□□ 2.02
CCDC88C-205ENST00000553403 WHRNQ9P202 907 aa27.69■■■□□ 2.02
CCDC88C-205ENST00000553403 hCG_1818297A0A087WSY0 165 aa27.68■■■□□ 2.02
CCDC88C-205ENST00000553403 C2CD4BA6NLJ0 364 aa27.68■■■□□ 2.02
CCDC88C-205ENST00000553403 PCK1P35558 622 aa27.68■■■□□ 2.02
CCDC88C-205ENST00000553403 PLTPP55058 493 aa27.68■■■□□ 2.02
CCDC88C-205ENST00000553403 UAP1Q16222 522 aaPredicted RBP27.68■■■□□ 2.02
CCDC88C-205ENST00000553403 DRICH1Q6PGQ1 229 aaPredicted RBP27.68■■■□□ 2.02
CCDC88C-205ENST00000553403 RNF180Q86T96 592 aa27.68■■■□□ 2.02
CCDC88C-205ENST00000553403 ADGRF2Q8IZF7 708 aa27.68■■■□□ 2.02
CCDC88C-205ENST00000553403 TNIP3Q96KP6 325 aa27.68■■■□□ 2.02
CCDC88C-205ENST00000553403 ZFP42Q96MM3 310 aa27.68■■■□□ 2.02
CCDC88C-205ENST00000553403 MTRF1LQ9UGC7 380 aaKnown RBP27.68■■■□□ 2.02
CCDC88C-205ENST00000553403 ADAM21Q9UKJ8 722 aa27.68■■■□□ 2.02
CCDC88C-205ENST00000553403 DPYSL4O14531 572 aa27.68■■■□□ 2.02
CCDC88C-205ENST00000553403 MYCNP04198 464 aaPredicted RBP27.68■■■□□ 2.02
CCDC88C-205ENST00000553403 CDKN2BP42772 138 aa27.68■■■□□ 2.02
CCDC88C-205ENST00000553403 RAB27AP51159 221 aa27.68■■■□□ 2.02
CCDC88C-205ENST00000553403 BCAT1P54687 386 aa27.68■■■□□ 2.02
CCDC88C-205ENST00000553403 DHX9Q08211 1270 aaKnown RBP27.68■■■□□ 2.02
CCDC88C-205ENST00000553403 BST2Q10589 180 aaKnown RBP27.68■■■□□ 2.02
CCDC88C-205ENST00000553403 KCTD19Q17RG1 926 aaPredicted RBP27.68■■■□□ 2.02
CCDC88C-205ENST00000553403 FAM26DQ5JW98 314 aa27.68■■■□□ 2.02
CCDC88C-205ENST00000553403 ART4Q93070 314 aa27.68■■■□□ 2.02
CCDC88C-205ENST00000553403 EXOC4Q96A65 974 aa27.68■■■□□ 2.02
CCDC88C-205ENST00000553403 AGO3Q9H9G7 860 aaKnown RBP27.68■■■□□ 2.02
CCDC88C-205ENST00000553403 PLAAQ9Y263 795 aa27.68■■■□□ 2.02
CCDC88C-205ENST00000553403 LRRD1A4D1F6 860 aa27.67■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms