RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 F8VP50 259 aa15□□□□□ -0.01
PTCH1-226ENST00000553011 PES1O00541 588 aaKnown RBP15□□□□□ -0.01
PTCH1-226ENST00000553011 LAMP2P13473 410 aa15□□□□□ -0.01
PTCH1-226ENST00000553011 HMGA1P17096 107 aaKnown RBP15□□□□□ -0.01
PTCH1-226ENST00000553011 ADORA2BP29275 332 aa15□□□□□ -0.01
PTCH1-226ENST00000553011 GRIK1P39086 918 aa15□□□□□ -0.01
PTCH1-226ENST00000553011 RAD23BP54727 409 aa15□□□□□ -0.01
PTCH1-226ENST00000553011 APBA1Q02410 837 aa15□□□□□ -0.01
PTCH1-226ENST00000553011 KRT31Q15323 416 aa15□□□□□ -0.01
PTCH1-226ENST00000553011 TAF12Q16514 161 aa15□□□□□ -0.01
PTCH1-226ENST00000553011 PHLDB3Q6NSJ2 640 aa15□□□□□ -0.01
PTCH1-226ENST00000553011 TRIM65Q6PJ69 517 aa15□□□□□ -0.01
PTCH1-226ENST00000553011 GBP6Q6ZN66 633 aa15□□□□□ -0.01
PTCH1-226ENST00000553011 GAREM2Q75VX8 874 aa15□□□□□ -0.01
PTCH1-226ENST00000553011 PLCD3Q8N3E9 789 aa15□□□□□ -0.01
PTCH1-226ENST00000553011 TTC39CQ8N584 583 aa15□□□□□ -0.01
PTCH1-226ENST00000553011 SLC4A11Q8NBS3 891 aa15□□□□□ -0.01
PTCH1-226ENST00000553011 LEMD2Q8NC56 503 aa15□□□□□ -0.01
PTCH1-226ENST00000553011 SLC2A14Q8TDB8 520 aa15□□□□□ -0.01
PTCH1-226ENST00000553011 MCRS1Q96EZ8 462 aa15□□□□□ -0.01
PTCH1-226ENST00000553011 NAT10Q9H0A0 1025 aaKnown RBP15□□□□□ -0.01
PTCH1-226ENST00000553011 HSD3B7Q9H2F3 369 aa15□□□□□ -0.01
PTCH1-226ENST00000553011 CDH7Q9ULB5 785 aa15□□□□□ -0.01
PTCH1-226ENST00000553011 NUP210Q8TEM1 1887 aaPredicted RBP14.99□□□□□ -0.01
PTCH1-226ENST00000553011 ATP8B3O60423 1300 aa14.99□□□□□ -0.01
PTCH1-226ENST00000553011 A0A1W2PRU2 124 aa14.99□□□□□ -0.01
PTCH1-226ENST00000553011 GTPBP10A4D1E9 387 aaKnown RBP14.99□□□□□ -0.01
PTCH1-226ENST00000553011 TNFRSF10AO00220 468 aa14.99□□□□□ -0.01
PTCH1-226ENST00000553011 DLL1O00548 723 aa14.99□□□□□ -0.01
PTCH1-226ENST00000553011 ZNF197O14709 1029 aa14.99□□□□□ -0.01
PTCH1-226ENST00000553011 TRIM66O15016 1216 aa14.99□□□□□ -0.01
PTCH1-226ENST00000553011 AP1G2O75843 785 aa14.99□□□□□ -0.01
PTCH1-226ENST00000553011 ASGR2P07307 311 aa14.99□□□□□ -0.01
PTCH1-226ENST00000553011 CSH1P0DML2 217 aa14.99□□□□□ -0.01
PTCH1-226ENST00000553011 CSH2P0DML3 217 aa14.99□□□□□ -0.01
PTCH1-226ENST00000553011 ZNF18P17022 549 aa14.99□□□□□ -0.01
PTCH1-226ENST00000553011 ACO1P21399 889 aaKnown RBP14.99□□□□□ -0.01
PTCH1-226ENST00000553011 PON1P27169 355 aa14.99□□□□□ -0.01
PTCH1-226ENST00000553011 ANXA13P27216 316 aa14.99□□□□□ -0.01
PTCH1-226ENST00000553011 GABRR2P28476 465 aa14.99□□□□□ -0.01
PTCH1-226ENST00000553011 YWHAEP62258 255 aaKnown RBP14.99□□□□□ -0.01
PTCH1-226ENST00000553011 TEAD2Q15562 447 aa14.99□□□□□ -0.01
PTCH1-226ENST00000553011 EXOC3L4Q17RC7 722 aa14.99□□□□□ -0.01
PTCH1-226ENST00000553011 ZSCAN23Q3MJ62 389 aa14.99□□□□□ -0.01
PTCH1-226ENST00000553011 GJB7Q6PEY0 223 aa14.99□□□□□ -0.01
PTCH1-226ENST00000553011 DHX40Q8IX18 779 aaKnown RBP14.99□□□□□ -0.01
PTCH1-226ENST00000553011 CYFIP2Q96F07 1278 aa14.99□□□□□ -0.01
PTCH1-226ENST00000553011 SMARCD1Q96GM5 515 aa14.99□□□□□ -0.01
PTCH1-226ENST00000553011 TMEM176AQ96HP8 235 aa14.99□□□□□ -0.01
PTCH1-226ENST00000553011 C8orf48Q96LL4 319 aa14.99□□□□□ -0.01
PTCH1-226ENST00000553011 HEXIM2Q96MH2 286 aaKnown RBP14.99□□□□□ -0.01
PTCH1-226ENST00000553011 KREMEN1Q96MU8 473 aa14.99□□□□□ -0.01
PTCH1-226ENST00000553011 KCNK16Q96T55 309 aa14.99□□□□□ -0.01
PTCH1-226ENST00000553011 BPIFA3Q9BQP9 254 aa14.99□□□□□ -0.01
PTCH1-226ENST00000553011 VPS16Q9H269 839 aa14.99□□□□□ -0.01
PTCH1-226ENST00000553011 FAM124BQ9H5Z6 455 aaPredicted RBP14.99□□□□□ -0.01
PTCH1-226ENST00000553011 IL21Q9HBE4 155 aa14.99□□□□□ -0.01
PTCH1-226ENST00000553011 KRT82Q9NSB4 513 aa14.99□□□□□ -0.01
PTCH1-226ENST00000553011 EPS15L1Q9UBC2 864 aa14.99□□□□□ -0.01
PTCH1-226ENST00000553011 MUTYHQ9UIF7 546 aa14.99□□□□□ -0.01
PTCH1-226ENST00000553011 MAGED2Q9UNF1 606 aaPredicted RBP14.99□□□□□ -0.01
PTCH1-226ENST00000553011 TECTAO75443 2155 aa14.99□□□□□ -0.01
PTCH1-226ENST00000553011 TRIOO75962 3097 aa14.99□□□□□ -0.01
PTCH1-226ENST00000553011 NOL4O94818 638 aa14.98□□□□□ -0.01
PTCH1-226ENST00000553011 TRIM21P19474 475 aaKnown RBP14.98□□□□□ -0.01
PTCH1-226ENST00000553011 ZNF165P49910 485 aa14.98□□□□□ -0.01
PTCH1-226ENST00000553011 GCNT1Q02742 428 aa14.98□□□□□ -0.01
PTCH1-226ENST00000553011 STXBP5Q5T5C0 1151 aa14.98□□□□□ -0.01
PTCH1-226ENST00000553011 PPP1R26Q5T8A7 1209 aaPredicted RBP14.98□□□□□ -0.01
PTCH1-226ENST00000553011 TMEM270Q6UE05 265 aa14.98□□□□□ -0.01
PTCH1-226ENST00000553011 ZMIZ2Q8NF64 920 aa14.98□□□□□ -0.01
PTCH1-226ENST00000553011 SPATA17Q96L03 361 aa14.98□□□□□ -0.01
PTCH1-226ENST00000553011 HNRNPABQ99729 332 aaKnown RBP14.98□□□□□ -0.01
PTCH1-226ENST00000553011 SMOQ99835 787 aa14.98□□□□□ -0.01
PTCH1-226ENST00000553011 ATXN3LQ9H3M9 355 aa14.98□□□□□ -0.01
PTCH1-226ENST00000553011 SIX2Q9NPC8 291 aa14.98□□□□□ -0.01
PTCH1-226ENST00000553011 UBE2TQ9NPD8 197 aaPredicted RBP14.98□□□□□ -0.01
PTCH1-226ENST00000553011 PCDHB4Q9Y5E5 795 aa14.98□□□□□ -0.01
PTCH1-226ENST00000553011 RNF225M0QZC1 329 aaPredicted RBP14.97□□□□□ -0.01
PTCH1-226ENST00000553011 BEST1O76090 585 aa14.97□□□□□ -0.01
PTCH1-226ENST00000553011 MICAL2O94851 1124 aa14.97□□□□□ -0.01
PTCH1-226ENST00000553011 F11P03951 625 aa14.97□□□□□ -0.01
PTCH1-226ENST00000553011 CDK11BP21127 795 aaKnown RBP14.97□□□□□ -0.01
PTCH1-226ENST00000553011 COPB1P53618 953 aaKnown RBP14.97□□□□□ -0.01
PTCH1-226ENST00000553011 USP46P62068 366 aa14.97□□□□□ -0.01
PTCH1-226ENST00000553011 CYP4F8P98187 520 aa14.97□□□□□ -0.01
PTCH1-226ENST00000553011 KCNMA1Q12791 1236 aa14.97□□□□□ -0.01
PTCH1-226ENST00000553011 IQCB1Q15051 598 aa14.97□□□□□ -0.01
PTCH1-226ENST00000553011 DPY19L2P1Q6NXN4 242 aa14.97□□□□□ -0.01
PTCH1-226ENST00000553011 TMEM150AQ86TG1 271 aa14.97□□□□□ -0.01
PTCH1-226ENST00000553011 RSAD2Q8WXG1 361 aa14.97□□□□□ -0.01
PTCH1-226ENST00000553011 ZSWIM3Q96MP5 696 aa14.97□□□□□ -0.01
PTCH1-226ENST00000553011 DNAI2Q9GZS0 605 aa14.97□□□□□ -0.01
PTCH1-226ENST00000553011 KCNK12Q9HB15 430 aa14.97□□□□□ -0.01
PTCH1-226ENST00000553011 DMAP1Q9NPF5 467 aaPredicted RBP14.97□□□□□ -0.01
PTCH1-226ENST00000553011 GDE1Q9NZC3 331 aa14.97□□□□□ -0.01
PTCH1-226ENST00000553011 LIMA1Q9UHB6 759 aaKnown RBP14.97□□□□□ -0.01
PTCH1-226ENST00000553011 AJAP1Q9UKB5 411 aaPredicted RBP14.97□□□□□ -0.01
PTCH1-226ENST00000553011 ZFP37Q9Y6Q3 630 aaPredicted RBP14.97□□□□□ -0.01
PTCH1-226ENST00000553011 HELZP42694 1942 aaKnown RBP14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms