RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 GSTCDQ8NEC7 633 aa7.21□□□□□ -1.26
LIMA1-204ENST00000549064 GAB3Q8WWW8 586 aa7.21□□□□□ -1.26
LIMA1-204ENST00000549064 IRF7Q92985 503 aa7.21□□□□□ -1.26
LIMA1-204ENST00000549064 TCEAL4Q96EI5 215 aa7.21□□□□□ -1.26
LIMA1-204ENST00000549064 LOXL4Q96JB6 756 aa7.21□□□□□ -1.26
LIMA1-204ENST00000549064 ZFP14Q9HCL3 533 aa7.21□□□□□ -1.26
LIMA1-204ENST00000549064 KRT82Q9NSB4 513 aa7.21□□□□□ -1.26
LIMA1-204ENST00000549064 GDE1Q9NZC3 331 aa7.21□□□□□ -1.26
LIMA1-204ENST00000549064 KLK13Q9UKR3 277 aa7.21□□□□□ -1.26
LIMA1-204ENST00000549064 STARD13Q9Y3M8 1113 aa7.21□□□□□ -1.26
LIMA1-204ENST00000549064 ASCC3Q8N3C0 2202 aaKnown RBP7.21□□□□□ -1.26
LIMA1-204ENST00000549064 ITPR1Q14643 2758 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 IGSF10Q6WRI0 2623 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 ARID2Q68CP9 1835 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 CELSR3Q9NYQ7 3312 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 CCDC69A6NI79 296 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 SLC38A8A6NNN8 435 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 HIP1O00291 1037 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 SH2B2O14492 632 aaPredicted RBP7.2□□□□□ -1.26
LIMA1-204ENST00000549064 PRC1O43663 620 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 EXTL3O43909 919 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 MAFO75444 373 aaPredicted RBP7.2□□□□□ -1.26
LIMA1-204ENST00000549064 TADA2AO75478 443 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 POU2F2P09086 479 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 SRGAP2CP0DJJ0 459 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 CCDC192P0DO97 292 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 PSMC3P17980 439 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 AKAP5P24588 427 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 IGFBP6P24592 240 aaPredicted RBP7.2□□□□□ -1.26
LIMA1-204ENST00000549064 OR1D2P34982 312 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 VIPR2P41587 438 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 CCR2P41597 374 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 SETQ01105 290 aaPredicted RBP7.2□□□□□ -1.26
LIMA1-204ENST00000549064 COL28A1Q2UY09 1125 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 SLC10A6Q3KNW5 377 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 PLEKHG6Q3KR16 790 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 PRSS36Q5K4E3 855 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 PLA2G4FQ68DD2 849 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 PKN3Q6P5Z2 889 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 C12orf40Q86WS4 652 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 MICU3Q86XE3 530 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 CACTIN-AS1Q8N1I8 211 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 DEFB124Q8NES8 71 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 TTC8Q8TAM2 541 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 LENG9Q96B70 501 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 CPB2Q96IY4 423 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 ZSWIM3Q96MP5 696 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 TTPALQ9BTX7 342 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 SPATA9Q9BWV2 254 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 LRRC2Q9BYS8 371 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 UNC45AQ9H3U1 944 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 NXF3Q9H4D5 531 aaKnown RBP7.2□□□□□ -1.26
LIMA1-204ENST00000549064 VPS45Q9NRW7 570 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 POLR3BQ9NW08 1133 aaPredicted RBP7.2□□□□□ -1.26
LIMA1-204ENST00000549064 DDX56Q9NY93 547 aaKnown RBP7.2□□□□□ -1.26
LIMA1-204ENST00000549064 SLC12A7Q9Y666 1083 aa7.2□□□□□ -1.26
LIMA1-204ENST00000549064 HELZ2Q9BYK8 2649 aaKnown RBP7.2□□□□□ -1.26
LIMA1-204ENST00000549064 SF3B1O75533 1304 aaKnown RBP eCLIP7.2□□□□□ -1.26
LIMA1-204ENST00000549064 MAST4O15021 2626 aa7.19□□□□□ -1.26
LIMA1-204ENST00000549064 THADAQ6YHU6 1953 aa7.19□□□□□ -1.26
LIMA1-204ENST00000549064 LNP1A1A4G5 178 aa7.19□□□□□ -1.26
LIMA1-204ENST00000549064 WDR27A2RRH5 827 aa7.19□□□□□ -1.26
LIMA1-204ENST00000549064 CASTOR2A6NHX0 329 aa7.19□□□□□ -1.26
LIMA1-204ENST00000549064 ARNTLO00327 626 aa7.19□□□□□ -1.26
LIMA1-204ENST00000549064 MSH4O15457 936 aa7.19□□□□□ -1.26
LIMA1-204ENST00000549064 SUSD5O60279 629 aa7.19□□□□□ -1.26
LIMA1-204ENST00000549064 PGRP06401 933 aa7.19□□□□□ -1.26
LIMA1-204ENST00000549064 GJA1P17302 382 aa7.19□□□□□ -1.26
LIMA1-204ENST00000549064 POLR2BP30876 1174 aaKnown RBP7.19□□□□□ -1.26
LIMA1-204ENST00000549064 LRRC32Q14392 662 aa7.19□□□□□ -1.26
LIMA1-204ENST00000549064 HSP90AA2PQ14568 343 aaPredicted RBP7.19□□□□□ -1.26
LIMA1-204ENST00000549064 NCAPHQ15003 741 aa7.19□□□□□ -1.26
LIMA1-204ENST00000549064 XKR3Q5GH77 459 aa7.19□□□□□ -1.26
LIMA1-204ENST00000549064 DAB2IPQ5VWQ8 1189 aa7.19□□□□□ -1.26
LIMA1-204ENST00000549064 CASC1Q6TDU7 716 aa7.19□□□□□ -1.26
LIMA1-204ENST00000549064 SRGAP1Q7Z6B7 1085 aa7.19□□□□□ -1.26
LIMA1-204ENST00000549064 CDR2LQ86X02 465 aaPredicted RBP7.19□□□□□ -1.26
LIMA1-204ENST00000549064 PROSER1Q86XN7 944 aa7.19□□□□□ -1.26
LIMA1-204ENST00000549064 FANCBQ8NB91 859 aa7.19□□□□□ -1.26
LIMA1-204ENST00000549064 CNNM3Q8NE01 707 aa7.19□□□□□ -1.26
LIMA1-204ENST00000549064 ZSWIM2Q8NEG5 633 aa7.19□□□□□ -1.26
LIMA1-204ENST00000549064 NANOS1Q8WY41 292 aaKnown RBP7.19□□□□□ -1.26
LIMA1-204ENST00000549064 TMEM143Q96AN5 459 aa7.19□□□□□ -1.26
LIMA1-204ENST00000549064 RSPRY1Q96DX4 576 aa7.19□□□□□ -1.26
LIMA1-204ENST00000549064 KLHDC7BQ96G42 594 aa7.19□□□□□ -1.26
LIMA1-204ENST00000549064 UBN1Q9NPG3 1134 aa7.19□□□□□ -1.26
LIMA1-204ENST00000549064 TRPV5Q9NQA5 729 aa7.19□□□□□ -1.26
LIMA1-204ENST00000549064 NEUROG3Q9Y4Z2 214 aa7.19□□□□□ -1.26
LIMA1-204ENST00000549064 PCDHGA5Q9Y5G8 931 aa7.19□□□□□ -1.26
LIMA1-204ENST00000549064 CACNA1EQ15878 2313 aa7.19□□□□□ -1.26
LIMA1-204ENST00000549064 ABCA7Q8IZY2 2146 aa7.19□□□□□ -1.26
LIMA1-204ENST00000549064 TRIP11Q15643 1979 aa7.19□□□□□ -1.26
LIMA1-204ENST00000549064 PCNX2A6NKB5 2137 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 PATE3B3GLJ2 98 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 TNFRSF10CO14798 259 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 ZNF263O14978 683 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 DCLK1O15075 740 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 EDIL3O43854 480 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 TSPAN1O60635 241 aa7.18□□□□□ -1.26
LIMA1-204ENST00000549064 GAS7O60861 476 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms