RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 CCDC26Q8TAB7 109 aa13.73□□□□□ -0.21
SCAF11-208ENST00000546534 KCNN1Q92952 543 aa13.73□□□□□ -0.21
SCAF11-208ENST00000546534 MARVELD3Q96A59 401 aa13.73□□□□□ -0.21
SCAF11-208ENST00000546534 PNMA5Q96PV4 448 aa13.73□□□□□ -0.21
SCAF11-208ENST00000546534 FNBP1Q96RU3 617 aa13.73□□□□□ -0.21
SCAF11-208ENST00000546534 MSTO1Q9BUK6 570 aa13.73□□□□□ -0.21
SCAF11-208ENST00000546534 CCSER1Q9C0I3 900 aa13.73□□□□□ -0.21
SCAF11-208ENST00000546534 TMEM206Q9H813 350 aa13.73□□□□□ -0.21
SCAF11-208ENST00000546534 LARSQ9P2J5 1176 aaKnown RBP13.73□□□□□ -0.21
SCAF11-208ENST00000546534 ASCC3Q8N3C0 2202 aaKnown RBP13.72□□□□□ -0.21
SCAF11-208ENST00000546534 DENND4CQ5VZ89 1909 aa13.72□□□□□ -0.21
SCAF11-208ENST00000546534 KIAA1549LQ6ZVL6 1849 aa13.72□□□□□ -0.21
SCAF11-208ENST00000546534 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.72□□□□□ -0.21
SCAF11-208ENST00000546534 NOL4O94818 638 aa13.72□□□□□ -0.21
SCAF11-208ENST00000546534 CAPNS1P04632 268 aa13.72□□□□□ -0.21
SCAF11-208ENST00000546534 CKMP06732 381 aa13.72□□□□□ -0.21
SCAF11-208ENST00000546534 PTGER3P43115 390 aa13.72□□□□□ -0.21
SCAF11-208ENST00000546534 NEK4P51957 841 aa13.72□□□□□ -0.21
SCAF11-208ENST00000546534 ZC2HC1CQ53FD0 456 aaPredicted RBP13.72□□□□□ -0.21
SCAF11-208ENST00000546534 ARSHQ5FYA8 562 aa13.72□□□□□ -0.21
SCAF11-208ENST00000546534 HYIQ5T013 277 aa13.72□□□□□ -0.21
SCAF11-208ENST00000546534 SLC39A4Q6P5W5 647 aa13.72□□□□□ -0.21
SCAF11-208ENST00000546534 DTHD1Q6ZMT9 781 aa13.72□□□□□ -0.21
SCAF11-208ENST00000546534 LPCAT2Q7L5N7 544 aa13.72□□□□□ -0.21
SCAF11-208ENST00000546534 SYT12Q8IV01 421 aa13.72□□□□□ -0.21
SCAF11-208ENST00000546534 TMEFF1Q8IYR6 380 aa13.72□□□□□ -0.21
SCAF11-208ENST00000546534 FRMD1Q8N878 549 aa13.72□□□□□ -0.21
SCAF11-208ENST00000546534 ARL14EPQ8N8R7 260 aaPredicted RBP13.72□□□□□ -0.21
SCAF11-208ENST00000546534 SH3RF2Q8TEC5 729 aa13.72□□□□□ -0.21
SCAF11-208ENST00000546534 LRRC15Q8TF66 581 aa13.72□□□□□ -0.21
SCAF11-208ENST00000546534 TRMT2BQ96GJ1 504 aaKnown RBP13.72□□□□□ -0.21
SCAF11-208ENST00000546534 EPAS1Q99814 870 aa13.72□□□□□ -0.21
SCAF11-208ENST00000546534 ASB7Q9H672 318 aa13.72□□□□□ -0.21
SCAF11-208ENST00000546534 DPP3Q9NY33 737 aa13.72□□□□□ -0.21
SCAF11-208ENST00000546534 KCND2Q9NZV8 630 aa13.72□□□□□ -0.21
SCAF11-208ENST00000546534 GCNT4Q9P109 453 aa13.72□□□□□ -0.21
SCAF11-208ENST00000546534 UXTQ9UBK9 157 aaPredicted RBP13.72□□□□□ -0.21
SCAF11-208ENST00000546534 ANK1P16157 1881 aa13.72□□□□□ -0.21
SCAF11-208ENST00000546534 TRAV19A0A0A6YYK7 116 aa13.71□□□□□ -0.21
SCAF11-208ENST00000546534 FAM221BA6H8Z2 402 aa13.71□□□□□ -0.21
SCAF11-208ENST00000546534 C2orf78A6NCI8 922 aa13.71□□□□□ -0.21
SCAF11-208ENST00000546534 KPNA7A9QM74 516 aa13.71□□□□□ -0.21
SCAF11-208ENST00000546534 UPK3BL1B0FP48 263 aa13.71□□□□□ -0.21
SCAF11-208ENST00000546534 UPK3BL2E5RIL1 263 aa13.71□□□□□ -0.21
SCAF11-208ENST00000546534 PLA2G4BP0C869 781 aa13.71□□□□□ -0.21
SCAF11-208ENST00000546534 CYP2F1P24903 491 aa13.71□□□□□ -0.21
SCAF11-208ENST00000546534 PRPHP41219 470 aa13.71□□□□□ -0.21
SCAF11-208ENST00000546534 ACOT2P49753 483 aa13.71□□□□□ -0.21
SCAF11-208ENST00000546534 RPL10AP62906 217 aaKnown RBP13.71□□□□□ -0.21
SCAF11-208ENST00000546534 FAM193AP78312 1265 aa13.71□□□□□ -0.21
SCAF11-208ENST00000546534 TSPY1Q01534 308 aa13.71□□□□□ -0.21
SCAF11-208ENST00000546534 NFE2Q16621 373 aaPredicted RBP13.71□□□□□ -0.21
SCAF11-208ENST00000546534 GAB4Q2WGN9 574 aa13.71□□□□□ -0.21
SCAF11-208ENST00000546534 PROSER1Q86XN7 944 aa13.71□□□□□ -0.21
SCAF11-208ENST00000546534 CCDC83Q8IWF9 413 aa13.71□□□□□ -0.21
SCAF11-208ENST00000546534 CHCHD4Q8N4Q1 142 aa13.71□□□□□ -0.21
SCAF11-208ENST00000546534 MYRFLQ96LU7 910 aa13.71□□□□□ -0.21
SCAF11-208ENST00000546534 MBD1Q9UIS9 605 aaPredicted RBP13.71□□□□□ -0.21
SCAF11-208ENST00000546534 C2CD2Q9Y426 696 aa13.71□□□□□ -0.21
SCAF11-208ENST00000546534 CACNA1EQ15878 2313 aa13.71□□□□□ -0.21
SCAF11-208ENST00000546534 MYO16Q9Y6X6 1858 aa13.71□□□□□ -0.21
SCAF11-208ENST00000546534 ZNF638Q14966 1978 aaKnown RBP13.71□□□□□ -0.22
SCAF11-208ENST00000546534 ATXN2Q99700 1313 aaKnown RBP13.7□□□□□ -0.22
SCAF11-208ENST00000546534 OBSL1O75147 1896 aa13.7□□□□□ -0.22
SCAF11-208ENST00000546534 SCN1AP35498 2009 aa13.7□□□□□ -0.22
SCAF11-208ENST00000546534 ANKRD63C9JTQ0 380 aa13.7□□□□□ -0.22
SCAF11-208ENST00000546534 H0Y626 953 aa13.7□□□□□ -0.22
SCAF11-208ENST00000546534 K7ENM7 598 aa13.7□□□□□ -0.22
SCAF11-208ENST00000546534 LAD1O00515 517 aa13.7□□□□□ -0.22
SCAF11-208ENST00000546534 ALDH1A2O94788 518 aa13.7□□□□□ -0.22
SCAF11-208ENST00000546534 TRIM16O95361 564 aa13.7□□□□□ -0.22
SCAF11-208ENST00000546534 NFATC1O95644 943 aa13.7□□□□□ -0.22
SCAF11-208ENST00000546534 MRPS21P82921 87 aaKnown RBP13.7□□□□□ -0.22
SCAF11-208ENST00000546534 CCDC142Q17RM4 750 aa13.7□□□□□ -0.22
SCAF11-208ENST00000546534 SV2CQ496J9 727 aa13.7□□□□□ -0.22
SCAF11-208ENST00000546534 SOWAHCQ53LP3 525 aaPredicted RBP13.7□□□□□ -0.22
SCAF11-208ENST00000546534 SLC23A3Q6PIS1 610 aa13.7□□□□□ -0.22
SCAF11-208ENST00000546534 C19orf48Q6RUI8 117 aa13.7□□□□□ -0.22
SCAF11-208ENST00000546534 SFTPA1Q8IWL2 248 aa13.7□□□□□ -0.22
SCAF11-208ENST00000546534 ALLCQ8N6M5 410 aa13.7□□□□□ -0.22
SCAF11-208ENST00000546534 IL17RCQ8NAC3 791 aa13.7□□□□□ -0.22
SCAF11-208ENST00000546534 LEO1Q8WVC0 666 aaPredicted RBP13.7□□□□□ -0.22
SCAF11-208ENST00000546534 REEP2Q9BRK0 252 aa13.7□□□□□ -0.22
SCAF11-208ENST00000546534 ABCB6Q9NP58 842 aa13.7□□□□□ -0.22
SCAF11-208ENST00000546534 FSCN3Q9NQT6 498 aa13.7□□□□□ -0.22
SCAF11-208ENST00000546534 ODF2LQ9ULJ1 636 aa13.7□□□□□ -0.22
SCAF11-208ENST00000546534 PCDHGA10Q9Y5H3 936 aa13.7□□□□□ -0.22
SCAF11-208ENST00000546534 DSPP15924 2871 aaKnown RBP13.69□□□□□ -0.22
SCAF11-208ENST00000546534 PCNX2A6NKB5 2137 aa13.69□□□□□ -0.22
SCAF11-208ENST00000546534 WDFY3Q8IZQ1 3526 aa13.69□□□□□ -0.22
SCAF11-208ENST00000546534 TISP43B9A030 160 aa13.69□□□□□ -0.22
SCAF11-208ENST00000546534 SGK1O00141 431 aa13.69□□□□□ -0.22
SCAF11-208ENST00000546534 KLF8O95600 359 aaPredicted RBP13.69□□□□□ -0.22
SCAF11-208ENST00000546534 CFIP05156 583 aa13.69□□□□□ -0.22
SCAF11-208ENST00000546534 TCF3P15923 654 aa13.69□□□□□ -0.22
SCAF11-208ENST00000546534 HDCP19113 662 aa13.69□□□□□ -0.22
SCAF11-208ENST00000546534 ITPKAP23677 461 aa13.69□□□□□ -0.22
SCAF11-208ENST00000546534 RDXP35241 583 aaKnown RBP13.69□□□□□ -0.22
SCAF11-208ENST00000546534 ZXDBP98169 803 aa13.69□□□□□ -0.22
SCAF11-208ENST00000546534 MESP2Q0VG99 397 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms