RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 LAYNQ6UX15 382 aa14.83□□□□□ -0.04
LIMS1-215ENST00000544547 ACAD11Q709F0 780 aa14.83□□□□□ -0.04
LIMS1-215ENST00000544547 CBWD2Q8IUF1 395 aa14.83□□□□□ -0.04
LIMS1-215ENST00000544547 PPIL6Q8IXY8 311 aa14.83□□□□□ -0.04
LIMS1-215ENST00000544547 SEPT12Q8IYM1 358 aa14.83□□□□□ -0.04
LIMS1-215ENST00000544547 ETNPPLQ8TBG4 499 aa14.83□□□□□ -0.04
LIMS1-215ENST00000544547 TUBGCP5Q96RT8 1024 aa14.83□□□□□ -0.04
LIMS1-215ENST00000544547 DOLKQ9UPQ8 538 aa14.83□□□□□ -0.04
LIMS1-215ENST00000544547 LRRC42Q9Y546 428 aa14.83□□□□□ -0.04
LIMS1-215ENST00000544547 NALCNQ8IZF0 1738 aa14.83□□□□□ -0.04
LIMS1-215ENST00000544547 GOLGA8QA0A0J9YX86 632 aa14.83□□□□□ -0.04
LIMS1-215ENST00000544547 GOLGA8OA6NCC3 632 aa14.83□□□□□ -0.04
LIMS1-215ENST00000544547 TISP43B9A030 160 aa14.83□□□□□ -0.04
LIMS1-215ENST00000544547 GOLGA8NF8WBI6 632 aa14.83□□□□□ -0.04
LIMS1-215ENST00000544547 AKAP10O43572 662 aa14.83□□□□□ -0.04
LIMS1-215ENST00000544547 NELFEP18615 380 aaKnown RBP14.83□□□□□ -0.04
LIMS1-215ENST00000544547 AMPD1P23109 780 aa14.83□□□□□ -0.04
LIMS1-215ENST00000544547 TUBP50607 506 aa14.83□□□□□ -0.04
LIMS1-215ENST00000544547 NEK3P51956 506 aa14.83□□□□□ -0.04
LIMS1-215ENST00000544547 WDR4P57081 412 aaKnown RBP14.83□□□□□ -0.04
LIMS1-215ENST00000544547 CPNE8Q86YQ8 564 aa14.83□□□□□ -0.04
LIMS1-215ENST00000544547 USP13Q92995 863 aaPredicted RBP14.83□□□□□ -0.04
LIMS1-215ENST00000544547 CDHR1Q96JP9 859 aa14.83□□□□□ -0.04
LIMS1-215ENST00000544547 NMUR2Q9GZQ4 415 aa14.83□□□□□ -0.04
LIMS1-215ENST00000544547 PALMDQ9NP74 551 aa14.83□□□□□ -0.04
LIMS1-215ENST00000544547 ZNF277Q9NRM2 450 aaPredicted RBP14.83□□□□□ -0.04
LIMS1-215ENST00000544547 SLC17A7Q9P2U7 560 aa14.83□□□□□ -0.04
LIMS1-215ENST00000544547 AKT3Q9Y243 479 aa14.83□□□□□ -0.04
LIMS1-215ENST00000544547 KCNN4O15554 427 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 CHN2P52757 468 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 ITKQ08881 620 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 TBL3Q12788 808 aaKnown RBP14.82□□□□□ -0.04
LIMS1-215ENST00000544547 SUPT20HL1Q3ZLR7 823 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 SATL1Q86VE3 508 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 NRBF2Q96F24 287 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 PHF12Q96QT6 1004 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 KIFC3Q9BVG8 833 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 MRC1P22897 1456 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 ABCC6O95255 1503 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 RPL10AP62906 217 aaKnown RBP14.82□□□□□ -0.04
LIMS1-215ENST00000544547 FAAP100Q0VG06 881 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 KRT27Q7Z3Y8 459 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 TTC7BQ86TV6 843 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 C7orf31Q8N865 590 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 SPATA18Q8TC71 538 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 GTSE1Q9NYZ3 720 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 SAE1Q9UBE0 346 aaPredicted RBP14.82□□□□□ -0.04
LIMS1-215ENST00000544547 ZNF229Q9UJW7 825 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 MROH7Q68CQ1 1323 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 MSH4O15457 936 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 ECHS1P30084 290 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 ABCD1P33897 745 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 NCKAP1LP55160 1127 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 TSPY1Q01534 308 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 PTK6Q13882 451 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 Q3C1V9 767 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 SLC10A5Q5PT55 438 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 SLC51AQ86UW1 340 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 HAS1Q92839 578 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 TOPORSQ9NS56 1045 aaPredicted RBP14.82□□□□□ -0.04
LIMS1-215ENST00000544547 POLLQ9UGP5 575 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 LRRC37A3O60309 1634 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 GTPBP10A4D1E9 387 aaKnown RBP14.82□□□□□ -0.04
LIMS1-215ENST00000544547 DNALI1O14645 258 aaPredicted RBP14.82□□□□□ -0.04
LIMS1-215ENST00000544547 FAM58BPP0C7Q3 252 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 ACOT2P49753 483 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 ATP13A4Q4VNC1 1196 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 RINLQ6ZS11 566 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 PATL1Q86TB9 770 aaKnown RBP14.82□□□□□ -0.04
LIMS1-215ENST00000544547 ULK2Q8IYT8 1036 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 DDI1Q8WTU0 396 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 CYGBQ8WWM9 190 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 HDAC11Q96DB2 347 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 KCTD10Q9H3F6 313 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 PPCSQ9HAB8 311 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 TMCO1Q9UM00 188 aa14.82□□□□□ -0.04
LIMS1-215ENST00000544547 SLIT3O75094 1523 aa14.81□□□□□ -0.04
LIMS1-215ENST00000544547 TM9SF1O15321 606 aa14.81□□□□□ -0.04
LIMS1-215ENST00000544547 OSBPP22059 807 aa14.81□□□□□ -0.04
LIMS1-215ENST00000544547 CCNA1P78396 465 aa14.81□□□□□ -0.04
LIMS1-215ENST00000544547 PLOD1Q02809 727 aaPredicted RBP14.81□□□□□ -0.04
LIMS1-215ENST00000544547 TRIM16LQ309B1 348 aa14.81□□□□□ -0.04
LIMS1-215ENST00000544547 EMC10Q5UCC4 262 aa14.81□□□□□ -0.04
LIMS1-215ENST00000544547 PLEKHA7Q6IQ23 1121 aa14.81□□□□□ -0.04
LIMS1-215ENST00000544547 POTEAQ6S8J7 498 aa14.81□□□□□ -0.04
LIMS1-215ENST00000544547 DENND5BQ6ZUT9 1274 aa14.81□□□□□ -0.04
LIMS1-215ENST00000544547 CYLDQ9NQC7 956 aa14.81□□□□□ -0.04
LIMS1-215ENST00000544547 TDRKHQ9Y2W6 561 aaKnown RBP14.81□□□□□ -0.04
LIMS1-215ENST00000544547 TOPAZ1Q8N9V7 1692 aa14.81□□□□□ -0.04
LIMS1-215ENST00000544547 SPDYE16A6NNV3 312 aaPredicted RBP14.81□□□□□ -0.04
LIMS1-215ENST00000544547 S100BP04271 92 aaPredicted RBP14.81□□□□□ -0.04
LIMS1-215ENST00000544547 FGRP09769 529 aa14.81□□□□□ -0.04
LIMS1-215ENST00000544547 SMARCA1P28370 1054 aa14.81□□□□□ -0.04
LIMS1-215ENST00000544547 MLH1P40692 756 aa14.81□□□□□ -0.04
LIMS1-215ENST00000544547 EIF2B2P49770 351 aaKnown RBP14.81□□□□□ -0.04
LIMS1-215ENST00000544547 BCAR1P56945 870 aa14.81□□□□□ -0.04
LIMS1-215ENST00000544547 STX1BP61266 288 aa14.81□□□□□ -0.04
LIMS1-215ENST00000544547 SPDYE2Q495Y8 402 aa14.81□□□□□ -0.04
LIMS1-215ENST00000544547 TTC39BQ5VTQ0 682 aaPredicted RBP14.81□□□□□ -0.04
LIMS1-215ENST00000544547 CLVS1Q8IUQ0 354 aaPredicted RBP14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms