RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 A0A0U1RQF3 1178 aa15.1■□□□□ 0.01
VPS33A-209ENST00000544349 KBTBD13C9JR72 458 aa15.1■□□□□ 0.01
VPS33A-209ENST00000544349 M0QYV0 167 aa15.1■□□□□ 0.01
VPS33A-209ENST00000544349 ARVCFO00192 962 aa15.1■□□□□ 0.01
VPS33A-209ENST00000544349 PROSCO94903 275 aa15.1■□□□□ 0.01
VPS33A-209ENST00000544349 GJB6O95452 261 aa15.1■□□□□ 0.01
VPS33A-209ENST00000544349 THP07101 528 aa15.1■□□□□ 0.01
VPS33A-209ENST00000544349 GPD2P43304 727 aa15.1■□□□□ 0.01
VPS33A-209ENST00000544349 AFF1P51825 1210 aaKnown RBP15.1■□□□□ 0.01
VPS33A-209ENST00000544349 CORO7P57737 925 aa15.1■□□□□ 0.01
VPS33A-209ENST00000544349 LILRA4P59901 499 aa15.1■□□□□ 0.01
VPS33A-209ENST00000544349 MTMR3Q13615 1198 aa15.1■□□□□ 0.01
VPS33A-209ENST00000544349 LLGL1Q15334 1064 aa15.1■□□□□ 0.01
VPS33A-209ENST00000544349 STILQ15468 1287 aa15.1■□□□□ 0.01
VPS33A-209ENST00000544349 SIX1Q15475 284 aaPredicted RBP15.1■□□□□ 0.01
VPS33A-209ENST00000544349 TRAF7Q6Q0C0 670 aa15.1■□□□□ 0.01
VPS33A-209ENST00000544349 LCLAT1Q6UWP7 414 aa15.1■□□□□ 0.01
VPS33A-209ENST00000544349 DPH6Q7L8W6 267 aa15.1■□□□□ 0.01
VPS33A-209ENST00000544349 LIMS2Q7Z4I7 341 aa15.1■□□□□ 0.01
VPS33A-209ENST00000544349 ACOT1Q86TX2 421 aa15.1■□□□□ 0.01
VPS33A-209ENST00000544349 C12orf29Q8N999 325 aa15.1■□□□□ 0.01
VPS33A-209ENST00000544349 OR6B3Q8NGW1 331 aa15.1■□□□□ 0.01
VPS33A-209ENST00000544349 ADAM2Q99965 735 aa15.1■□□□□ 0.01
VPS33A-209ENST00000544349 TSPAN16Q9UKR8 245 aa15.1■□□□□ 0.01
VPS33A-209ENST00000544349 ARL5CA6NH57 179 aa15.09■□□□□ 0.01
VPS33A-209ENST00000544349 GOLGA6L10A6NI86 522 aa15.09■□□□□ 0.01
VPS33A-209ENST00000544349 RPL21P46778 160 aaKnown RBP15.09■□□□□ 0.01
VPS33A-209ENST00000544349 RPL7AP62424 266 aaKnown RBP15.09■□□□□ 0.01
VPS33A-209ENST00000544349 DHX34Q14147 1143 aaKnown RBP15.09■□□□□ 0.01
VPS33A-209ENST00000544349 CYP4A22Q5TCH4 519 aa15.09■□□□□ 0.01
VPS33A-209ENST00000544349 SEL1L2Q5TEA6 688 aa15.09■□□□□ 0.01
VPS33A-209ENST00000544349 DNAJC24Q6P3W2 148 aa15.09■□□□□ 0.01
VPS33A-209ENST00000544349 C3orf20Q8ND61 904 aa15.09■□□□□ 0.01
VPS33A-209ENST00000544349 FBXO25Q8TCJ0 367 aa15.09■□□□□ 0.01
VPS33A-209ENST00000544349 KBTBD7Q8WVZ9 684 aa15.09■□□□□ 0.01
VPS33A-209ENST00000544349 UNC93B1Q9H1C4 597 aa15.09■□□□□ 0.01
VPS33A-209ENST00000544349 TSPYL2Q9H2G4 693 aaPredicted RBP15.09■□□□□ 0.01
VPS33A-209ENST00000544349 FAM187AA6NFU0 413 aa15.08■□□□□ 0.01
VPS33A-209ENST00000544349 TMEM191CA6NGB0 347 aa15.08■□□□□ 0.01
VPS33A-209ENST00000544349 A8MXQ7 604 aa15.08■□□□□ 0.01
VPS33A-209ENST00000544349 SHBGP04278 402 aa15.08■□□□□ 0.01
VPS33A-209ENST00000544349 MDH1P40925 334 aaKnown RBP15.08■□□□□ 0.01
VPS33A-209ENST00000544349 SEC24CP53992 1094 aa15.08■□□□□ 0.01
VPS33A-209ENST00000544349 PLTPP55058 493 aa15.08■□□□□ 0.01
VPS33A-209ENST00000544349 PPP1R15BQ5SWA1 713 aa15.08■□□□□ 0.01
VPS33A-209ENST00000544349 PPP1R26Q5T8A7 1209 aaPredicted RBP15.08■□□□□ 0.01
VPS33A-209ENST00000544349 APPL2Q8NEU8 664 aa15.08■□□□□ 0.01
VPS33A-209ENST00000544349 UBA3Q8TBC4 463 aa15.08■□□□□ 0.01
VPS33A-209ENST00000544349 CPXM1Q96SM3 734 aa15.08■□□□□ 0.01
VPS33A-209ENST00000544349 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.08■□□□□ 0.01
VPS33A-209ENST00000544349 BCCIPQ9P287 314 aaKnown RBP eCLIP15.08■□□□□ 0.01
VPS33A-209ENST00000544349 TJP2Q9UDY2 1190 aa15.08■□□□□ 0.01
VPS33A-209ENST00000544349 SLC12A6Q9UHW9 1150 aa15.08■□□□□ 0.01
VPS33A-209ENST00000544349 PTPN22Q9Y2R2 807 aa15.08■□□□□ 0.01
VPS33A-209ENST00000544349 NDUFAB1O14561 156 aa15.08■□□□□ 0
VPS33A-209ENST00000544349 FGFR1P11362 822 aa15.08■□□□□ 0
VPS33A-209ENST00000544349 SCNN1GP51170 649 aa15.08■□□□□ 0
VPS33A-209ENST00000544349 GSCP56915 257 aaPredicted RBP15.08■□□□□ 0
VPS33A-209ENST00000544349 RWDD2BP57060 319 aa15.08■□□□□ 0
VPS33A-209ENST00000544349 TAP1Q03518 808 aa15.08■□□□□ 0
VPS33A-209ENST00000544349 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.08■□□□□ 0
VPS33A-209ENST00000544349 MAGOHBQ96A72 148 aaKnown RBP15.08■□□□□ 0
VPS33A-209ENST00000544349 RSAD1Q9HA92 442 aa15.08■□□□□ 0
VPS33A-209ENST00000544349 WDR35Q9P2L0 1181 aa15.08■□□□□ 0
VPS33A-209ENST00000544349 IP6K2Q9UHH9 426 aa15.08■□□□□ 0
VPS33A-209ENST00000544349 HUS1O60921 280 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 ERBB2P04626 1255 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 PFKMP08237 780 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 RARAP10276 462 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 SKIP12755 728 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 CHRNA3P32297 505 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 MAN1A1P33908 653 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 GNL1P36915 607 aaPredicted RBP15.07■□□□□ 0
VPS33A-209ENST00000544349 GABRB2P47870 512 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 CDK7P50613 346 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 CLUL1Q15846 466 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 GOLGA7BQ2TAP0 167 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 KRT71Q3SY84 523 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 DAB2IPQ5VWQ8 1189 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 CCDC137Q6PK04 289 aaKnown RBP15.07■□□□□ 0
VPS33A-209ENST00000544349 SLC13A5Q86YT5 568 aaPredicted RBP15.07■□□□□ 0
VPS33A-209ENST00000544349 CRYBG2Q8N1P7 616 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 TOP6BLQ8N6T0 577 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 PGBD4Q96DM1 585 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 MCEEQ96PE7 176 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 BEGAINQ9BUH8 593 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 RASSF4Q9H2L5 321 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 SNX25Q9H3E2 840 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 DPEP3Q9H4B8 488 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 PCYOX1Q9UHG3 505 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.07■□□□□ 0
VPS33A-209ENST00000544349 FAM169AQ9Y6X4 670 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 SIGLEC16A6NMB1 481 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 DNM1LO00429 736 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 HCRTO43612 131 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 LMO2P25791 158 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 KCNJ1P48048 391 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 PSMC1P62191 440 aaKnown RBP15.07■□□□□ 0
VPS33A-209ENST00000544349 ZNF268Q14587 947 aaPredicted RBP15.07■□□□□ 0
VPS33A-209ENST00000544349 MBTPS1Q14703 1052 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms