RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 PLEKHH3Q7Z736 793 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 CACNA2D3Q8IZS8 1091 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 MAML3Q96JK9 1138 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 SYT17Q9BSW7 474 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 HEMGNQ9BXL5 484 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 SSU72Q9NP77 194 aaKnown RBP10.36□□□□□ -0.75
SS18-205ENST00000542420 NXF1Q9UBU9 619 aaKnown RBP10.36□□□□□ -0.75
SS18-205ENST00000542420 SLC24A2Q9UI40 661 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 DNPEPQ9ULA0 475 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 ZNF148Q9UQR1 794 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 Q9Y3F1 56 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 NRCAMQ92823 1304 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 CCL15-CCL14A0A0B4J2E2 113 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 LRRD1A4D1F6 860 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 MBLAC1A4D2B0 266 aaPredicted RBP10.36□□□□□ -0.75
SS18-205ENST00000542420 BTBD19C9JJ37 291 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 GPD1P21695 349 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 STIP1P31948 543 aaKnown RBP10.36□□□□□ -0.75
SS18-205ENST00000542420 MAGEA4P43358 317 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 ZBTB6Q15916 424 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 CCL15Q16663 113 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 P3H1Q32P28 736 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 LACTB2Q53H82 288 aaPredicted RBP10.36□□□□□ -0.75
SS18-205ENST00000542420 C2CD6Q53TS8 623 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 SLC27A1Q6PCB7 646 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 DLK2Q6UY11 383 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 PPP1R21Q6ZMI0 780 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 SCARA5Q6ZMJ2 495 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 CENPUQ71F23 418 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 GPR142Q7Z601 462 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 CCDC25Q86WR0 208 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 OTUD6BQ8N6M0 293 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 BEST2Q8NFU1 509 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 EPS8L3Q8TE67 593 aaKnown RBP10.36□□□□□ -0.75
SS18-205ENST00000542420 SNX27Q96L92 541 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 CPXM1Q96SM3 734 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 TINF2Q9BSI4 451 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 SMYD3Q9H7B4 428 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 SYNCQ9H7C4 482 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 PPANQ9NQ55 473 aaKnown RBP10.36□□□□□ -0.75
SS18-205ENST00000542420 CYTH4Q9UIA0 394 aa10.36□□□□□ -0.75
SS18-205ENST00000542420 FARP1Q9Y4F1 1045 aaPredicted RBP10.36□□□□□ -0.75
SS18-205ENST00000542420 DCDC2CA8MYV0 355 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 E7ESA3 106 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 PPP1R12AO14974 1030 aaPredicted RBP10.35□□□□□ -0.75
SS18-205ENST00000542420 TRUB2O95900 331 aaKnown RBP10.35□□□□□ -0.75
SS18-205ENST00000542420 CYP2C8P10632 490 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 YBX3P16989 372 aaKnown RBP eCLIP10.35□□□□□ -0.75
SS18-205ENST00000542420 CYP3A5P20815 502 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 HNRNPH1P31943 449 aaKnown RBP10.35□□□□□ -0.75
SS18-205ENST00000542420 PNPLA4P41247 253 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 RPL34P49207 117 aaKnown RBP10.35□□□□□ -0.75
SS18-205ENST00000542420 ACVR2BQ13705 512 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 PKDCCQ504Y2 493 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 MARCH8Q5T0T0 291 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 TTC19Q6DKK2 380 aaPredicted RBP10.35□□□□□ -0.75
SS18-205ENST00000542420 PIGWQ7Z7B1 504 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 EXOC3L1Q86VI1 746 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 PPIL6Q8IXY8 311 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 KIAA0319LQ8IZA0 1049 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 ANKS4BQ8N8V4 417 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 OR6J1Q8NGC5 347 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 NLRP7Q8WX94 980 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 ARHGEF2Q92974 986 aaKnown RBP10.35□□□□□ -0.75
SS18-205ENST00000542420 RBM15Q96T37 977 aaKnown RBP eCLIP10.35□□□□□ -0.75
SS18-205ENST00000542420 ADAMTS10Q9H324 1103 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 KDM4CQ9H3R0 1056 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 GBA2Q9HCG7 927 aaPredicted RBP10.35□□□□□ -0.75
SS18-205ENST00000542420 CNTN3Q9P232 1028 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 AGAP1Q9UPQ3 857 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 SCN1AP35498 2009 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 TLDC2A0PJX2 215 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 A6NJR5 290 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 C2CD4BA6NLJ0 364 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 M0QYV0 167 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 F2P00734 622 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 CD4P01730 458 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 ADCYAP1R1P41586 468 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 ARSEP51690 589 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 YARSP54577 528 aaKnown RBP10.35□□□□□ -0.75
SS18-205ENST00000542420 ZNF394Q53GI3 561 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 BOLA3Q53S33 107 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 XKR4Q5GH76 650 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 NOTUMQ6P988 496 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 ARHGEF18Q6ZSZ5 1173 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 CPLX4Q7Z7G2 160 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 PHLDB2Q86SQ0 1253 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 MAP7D3Q8IWC1 876 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 TMEM192Q8IY95 271 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 GRAMD1AQ96CP6 724 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 SEC16BQ96JE7 1060 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 SELENOSQ9BQE4 189 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 SLC4A5Q9BY07 1137 aa10.35□□□□□ -0.75
SS18-205ENST00000542420 METTL5Q9NRN9 209 aaKnown RBP10.35□□□□□ -0.75
SS18-205ENST00000542420 DDX20Q9UHI6 824 aaKnown RBP10.35□□□□□ -0.75
SS18-205ENST00000542420 UBQLN1Q9UMX0 589 aaKnown RBP10.35□□□□□ -0.75
SS18-205ENST00000542420 SPAG6O75602 509 aa10.34□□□□□ -0.75
SS18-205ENST00000542420 GSTA1P08263 222 aa10.34□□□□□ -0.75
SS18-205ENST00000542420 SMPD1P17405 629 aa10.34□□□□□ -0.75
SS18-205ENST00000542420 TGM2P21980 687 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms