RNA–Protein interactions for RNA: ENST00000541005.1

LTBR-208, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 583 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-208ENST00000541005 TADA3O75528 432 aa13.95□□□□□ -0.18
LTBR-208ENST00000541005 F11P03951 625 aa13.95□□□□□ -0.18
LTBR-208ENST00000541005 BDNFP23560 247 aa13.95□□□□□ -0.18
LTBR-208ENST00000541005 DDX6P26196 483 aaKnown RBP eCLIP13.95□□□□□ -0.18
LTBR-208ENST00000541005 FMO5P49326 533 aa13.95□□□□□ -0.18
LTBR-208ENST00000541005 NDST1P52848 882 aa13.95□□□□□ -0.18
LTBR-208ENST00000541005 TAF12Q16514 161 aa13.95□□□□□ -0.18
LTBR-208ENST00000541005 ARHGAP15Q53QZ3 475 aa13.95□□□□□ -0.18
LTBR-208ENST00000541005 STXBP5Q5T5C0 1151 aa13.95□□□□□ -0.18
LTBR-208ENST00000541005 SDHAF4Q5VUM1 108 aa13.95□□□□□ -0.18
LTBR-208ENST00000541005 TANGO2Q6ICL3 276 aa13.95□□□□□ -0.18
LTBR-208ENST00000541005 TRIM59Q8IWR1 403 aa13.95□□□□□ -0.18
LTBR-208ENST00000541005 TTC39CQ8N584 583 aa13.95□□□□□ -0.18
LTBR-208ENST00000541005 PBXIP1Q96AQ6 731 aa13.95□□□□□ -0.18
LTBR-208ENST00000541005 E2F7Q96AV8 911 aa13.95□□□□□ -0.18
LTBR-208ENST00000541005 MED15Q96RN5 788 aa13.95□□□□□ -0.18
LTBR-208ENST00000541005 ZNF518BQ9C0D4 1074 aa13.95□□□□□ -0.18
LTBR-208ENST00000541005 ATXN3LQ9H3M9 355 aa13.95□□□□□ -0.18
LTBR-208ENST00000541005 TASP1Q9H6P5 420 aa13.95□□□□□ -0.18
LTBR-208ENST00000541005 TMEM30AQ9NV96 361 aa13.95□□□□□ -0.18
LTBR-208ENST00000541005 NCANO14594 1321 aa13.94□□□□□ -0.18
LTBR-208ENST00000541005 GOLGA6L22H0YM25 854 aa13.94□□□□□ -0.18
LTBR-208ENST00000541005 P4HA2O15460 535 aa13.94□□□□□ -0.18
LTBR-208ENST00000541005 FGFR1OPO95684 399 aaKnown RBP13.94□□□□□ -0.18
LTBR-208ENST00000541005 ANXA13P27216 316 aa13.94□□□□□ -0.18
LTBR-208ENST00000541005 GRIK1P39086 918 aa13.94□□□□□ -0.18
LTBR-208ENST00000541005 STX17P56962 302 aa13.94□□□□□ -0.18
LTBR-208ENST00000541005 CCDC40Q4G0X9 1142 aa13.94□□□□□ -0.18
LTBR-208ENST00000541005 GPR158Q5T848 1215 aa13.94□□□□□ -0.18
LTBR-208ENST00000541005 RBM43Q6ZSC3 357 aaKnown RBP13.94□□□□□ -0.18
LTBR-208ENST00000541005 PAQR9Q6ZVX9 377 aa13.94□□□□□ -0.18
LTBR-208ENST00000541005 ACOT1Q86TX2 421 aa13.94□□□□□ -0.18
LTBR-208ENST00000541005 FAM35AQ86V20 835 aa13.94□□□□□ -0.18
LTBR-208ENST00000541005 SCN4BQ8IWT1 228 aa13.94□□□□□ -0.18
LTBR-208ENST00000541005 FUKQ8N0W3 1084 aa13.94□□□□□ -0.18
LTBR-208ENST00000541005 STKLD1Q8NE28 680 aa13.94□□□□□ -0.18
LTBR-208ENST00000541005 ST13P5Q8NFI4 369 aaPredicted RBP13.94□□□□□ -0.18
LTBR-208ENST00000541005 GPT2Q8TD30 523 aa13.94□□□□□ -0.18
LTBR-208ENST00000541005 DEPDC1BQ8WUY9 529 aa13.94□□□□□ -0.18
LTBR-208ENST00000541005 SMARCD1Q96GM5 515 aa13.94□□□□□ -0.18
LTBR-208ENST00000541005 TTLL2Q9BWV7 592 aa13.94□□□□□ -0.18
LTBR-208ENST00000541005 PLA2G2FQ9BZM2 168 aa13.94□□□□□ -0.18
LTBR-208ENST00000541005 SLITRK6Q9H5Y7 841 aa13.94□□□□□ -0.18
LTBR-208ENST00000541005 OBP2AQ9NY56 170 aa13.94□□□□□ -0.18
LTBR-208ENST00000541005 EHD2Q9NZN4 543 aa13.94□□□□□ -0.18
LTBR-208ENST00000541005 CACNA1IQ9P0X4 2223 aa13.94□□□□□ -0.18
LTBR-208ENST00000541005 F8VP50 259 aa13.93□□□□□ -0.18
LTBR-208ENST00000541005 CLDN5O00501 218 aa13.93□□□□□ -0.18
LTBR-208ENST00000541005 PDGFBP01127 241 aaPredicted RBP13.93□□□□□ -0.18
LTBR-208ENST00000541005 CFHP08603 1231 aa13.93□□□□□ -0.18
LTBR-208ENST00000541005 TRIM21P19474 475 aaKnown RBP13.93□□□□□ -0.18
LTBR-208ENST00000541005 CACNA2D1P54289 1103 aa13.93□□□□□ -0.18
LTBR-208ENST00000541005 GPC5P78333 572 aa13.93□□□□□ -0.18
LTBR-208ENST00000541005 CYP4F8P98187 520 aa13.93□□□□□ -0.18
LTBR-208ENST00000541005 PFKPQ01813 784 aa13.93□□□□□ -0.18
LTBR-208ENST00000541005 WDR44Q5JSH3 913 aa13.93□□□□□ -0.18
LTBR-208ENST00000541005 VITQ6UXI7 678 aa13.93□□□□□ -0.18
LTBR-208ENST00000541005 DENND5BQ6ZUT9 1274 aa13.93□□□□□ -0.18
LTBR-208ENST00000541005 SUGP1Q8IWZ8 645 aaKnown RBP13.93□□□□□ -0.18
LTBR-208ENST00000541005 WHAMMQ8TF30 809 aa13.93□□□□□ -0.18
LTBR-208ENST00000541005 DNASE1L2Q92874 299 aa13.93□□□□□ -0.18
LTBR-208ENST00000541005 TWNKQ96RR1 684 aa13.93□□□□□ -0.18
LTBR-208ENST00000541005 NT5C1AQ9BXI3 368 aa13.93□□□□□ -0.18
LTBR-208ENST00000541005 SRRTQ9BXP5 876 aaKnown RBP13.93□□□□□ -0.18
LTBR-208ENST00000541005 DMAP1Q9NPF5 467 aaPredicted RBP13.93□□□□□ -0.18
LTBR-208ENST00000541005 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.93□□□□□ -0.18
LTBR-208ENST00000541005 ARHGEF3Q9NR81 526 aa13.93□□□□□ -0.18
LTBR-208ENST00000541005 FBXL21Q9UKT6 434 aa13.93□□□□□ -0.18
LTBR-208ENST00000541005 ARIH1Q9Y4X5 557 aaPredicted RBP13.93□□□□□ -0.18
LTBR-208ENST00000541005 COL4A3Q01955 1670 aa13.93□□□□□ -0.18
LTBR-208ENST00000541005 FANCMQ8IYD8 2048 aa13.92□□□□□ -0.18
LTBR-208ENST00000541005 KRBA1A5PL33 1030 aa13.92□□□□□ -0.18
LTBR-208ENST00000541005 CCDC192P0DO97 292 aa13.92□□□□□ -0.18
LTBR-208ENST00000541005 CCDC130P13994 396 aa13.92□□□□□ -0.18
LTBR-208ENST00000541005 NPR3P17342 541 aa13.92□□□□□ -0.18
LTBR-208ENST00000541005 PFKLP17858 780 aa13.92□□□□□ -0.18
LTBR-208ENST00000541005 PSMC3P17980 439 aa13.92□□□□□ -0.18
LTBR-208ENST00000541005 COL9A1P20849 921 aa13.92□□□□□ -0.18
LTBR-208ENST00000541005 ERCC5P28715 1186 aaPredicted RBP13.92□□□□□ -0.18
LTBR-208ENST00000541005 VIPR2P41587 438 aa13.92□□□□□ -0.18
LTBR-208ENST00000541005 FCHO2Q0JRZ9 810 aa13.92□□□□□ -0.18
LTBR-208ENST00000541005 DPCR1Q3MIW9 517 aa13.92□□□□□ -0.18
LTBR-208ENST00000541005 CT47A1Q5JQC4 288 aaPredicted RBP13.92□□□□□ -0.18
LTBR-208ENST00000541005 CWF19L1Q69YN2 538 aaKnown RBP13.92□□□□□ -0.18
LTBR-208ENST00000541005 MON1AQ86VX9 555 aa13.92□□□□□ -0.18
LTBR-208ENST00000541005 ARID3BQ8IVW6 561 aaPredicted RBP13.92□□□□□ -0.18
LTBR-208ENST00000541005 MFSD6LQ8IWD5 586 aa13.92□□□□□ -0.18
LTBR-208ENST00000541005 CMTM8Q8IZV2 173 aa13.92□□□□□ -0.18
LTBR-208ENST00000541005 SIX5Q8N196 739 aa13.92□□□□□ -0.18
LTBR-208ENST00000541005 MRPS31Q92665 395 aaKnown RBP13.92□□□□□ -0.18
LTBR-208ENST00000541005 RSPRY1Q96DX4 576 aa13.92□□□□□ -0.18
LTBR-208ENST00000541005 HNRNPABQ99729 332 aaKnown RBP13.92□□□□□ -0.18
LTBR-208ENST00000541005 ARID3AQ99856 593 aa13.92□□□□□ -0.18
LTBR-208ENST00000541005 SLC46A2Q9BY10 475 aa13.92□□□□□ -0.18
LTBR-208ENST00000541005 DNAI2Q9GZS0 605 aa13.92□□□□□ -0.18
LTBR-208ENST00000541005 KCNH6Q9H252 994 aa13.92□□□□□ -0.18
LTBR-208ENST00000541005 CSNK1G1Q9HCP0 422 aa13.92□□□□□ -0.18
LTBR-208ENST00000541005 TRPV5Q9NQA5 729 aa13.92□□□□□ -0.18
LTBR-208ENST00000541005 KRT82Q9NSB4 513 aa13.92□□□□□ -0.18
LTBR-208ENST00000541005 MAGED2Q9UNF1 606 aaPredicted RBP13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms