RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 DMAP1Q9NPF5 467 aaPredicted RBP18.58■□□□□ 0.56
CLSTN3-210ENST00000540931 CD207Q9UJ71 328 aa18.58■□□□□ 0.56
CLSTN3-210ENST00000540931 CEP83Q9Y592 693 aa18.58■□□□□ 0.56
CLSTN3-210ENST00000540931 MYO7AQ13402 2215 aa18.57■□□□□ 0.56
CLSTN3-210ENST00000540931 F8VZ95 297 aa18.57■□□□□ 0.56
CLSTN3-210ENST00000540931 PTPN2P17706 415 aa18.57■□□□□ 0.56
CLSTN3-210ENST00000540931 GRIK1P39086 918 aa18.57■□□□□ 0.56
CLSTN3-210ENST00000540931 PPP3CCP48454 512 aa18.57■□□□□ 0.56
CLSTN3-210ENST00000540931 TSR1Q2NL82 804 aaKnown RBP18.57■□□□□ 0.56
CLSTN3-210ENST00000540931 DPY19L2P1Q6NXN4 242 aa18.57■□□□□ 0.56
CLSTN3-210ENST00000540931 PPP1R2P3Q6NXS1 205 aa18.57■□□□□ 0.56
CLSTN3-210ENST00000540931 ANKRD52Q8NB46 1076 aa18.57■□□□□ 0.56
CLSTN3-210ENST00000540931 MRFAP1L1Q96HT8 127 aa18.57■□□□□ 0.56
CLSTN3-210ENST00000540931 PGLYRP2Q96PD5 576 aa18.57■□□□□ 0.56
CLSTN3-210ENST00000540931 TMEM209Q96SK2 561 aa18.57■□□□□ 0.56
CLSTN3-210ENST00000540931 SEPT5Q99719 369 aaPredicted RBP18.57■□□□□ 0.56
CLSTN3-210ENST00000540931 DPEP3Q9H4B8 488 aa18.57■□□□□ 0.56
CLSTN3-210ENST00000540931 PIDD1Q9HB75 910 aa18.57■□□□□ 0.56
CLSTN3-210ENST00000540931 YIPF1Q9Y548 306 aa18.57■□□□□ 0.56
CLSTN3-210ENST00000540931 FHOD1Q9Y613 1164 aa18.57■□□□□ 0.56
CLSTN3-210ENST00000540931 BRWD1Q9NSI6 2320 aa18.56■□□□□ 0.56
CLSTN3-210ENST00000540931 CCDC195A0A1B0GUA6 201 aa18.56■□□□□ 0.56
CLSTN3-210ENST00000540931 ZNF197O14709 1029 aa18.56■□□□□ 0.56
CLSTN3-210ENST00000540931 ATP2C2O75185 946 aa18.56■□□□□ 0.56
CLSTN3-210ENST00000540931 NOL4O94818 638 aa18.56■□□□□ 0.56
CLSTN3-210ENST00000540931 RTN3O95197 1032 aaPredicted RBP18.56■□□□□ 0.56
CLSTN3-210ENST00000540931 SETSIPP0DME0 302 aa18.56■□□□□ 0.56
CLSTN3-210ENST00000540931 FERP16591 822 aa18.56■□□□□ 0.56
CLSTN3-210ENST00000540931 GNA15P30679 374 aa18.56■□□□□ 0.56
CLSTN3-210ENST00000540931 SOX5P35711 763 aa18.56■□□□□ 0.56
CLSTN3-210ENST00000540931 PBX1P40424 430 aa18.56■□□□□ 0.56
CLSTN3-210ENST00000540931 PDE6CP51160 858 aa18.56■□□□□ 0.56
CLSTN3-210ENST00000540931 BCAT1P54687 386 aa18.56■□□□□ 0.56
CLSTN3-210ENST00000540931 PABPC1LQ4VXU2 614 aaKnown RBP18.56■□□□□ 0.56
CLSTN3-210ENST00000540931 LCLAT1Q6UWP7 414 aa18.56■□□□□ 0.56
CLSTN3-210ENST00000540931 GPR149Q86SP6 731 aa18.56■□□□□ 0.56
CLSTN3-210ENST00000540931 FAM35AQ86V20 835 aa18.56■□□□□ 0.56
CLSTN3-210ENST00000540931 SLC2A14Q8TDB8 520 aa18.56■□□□□ 0.56
CLSTN3-210ENST00000540931 SYN2Q92777 582 aaPredicted RBP18.56■□□□□ 0.56
CLSTN3-210ENST00000540931 MSLNLQ96KJ4 702 aa18.56■□□□□ 0.56
CLSTN3-210ENST00000540931 DUSP16Q9BY84 665 aa18.56■□□□□ 0.56
CLSTN3-210ENST00000540931 B3GNT5Q9BYG0 378 aa18.56■□□□□ 0.56
CLSTN3-210ENST00000540931 FBXO44Q9H4M3 255 aa18.56■□□□□ 0.56
CLSTN3-210ENST00000540931 CSNK1G1Q9HCP0 422 aa18.56■□□□□ 0.56
CLSTN3-210ENST00000540931 AVENQ9NQS1 362 aaPredicted RBP18.56■□□□□ 0.56
CLSTN3-210ENST00000540931 LUC7L2Q9Y383 392 aaKnown RBP18.56■□□□□ 0.56
CLSTN3-210ENST00000540931 BZW2Q9Y6E2 419 aaKnown RBP18.56■□□□□ 0.56
CLSTN3-210ENST00000540931 ATG2AQ2TAZ0 1938 aa18.56■□□□□ 0.56
CLSTN3-210ENST00000540931 SOBPA7XYQ1 873 aa18.55■□□□□ 0.56
CLSTN3-210ENST00000540931 FOXN3O00409 490 aaPredicted RBP18.55■□□□□ 0.56
CLSTN3-210ENST00000540931 AP1G2O75843 785 aa18.55■□□□□ 0.56
CLSTN3-210ENST00000540931 MICAL2O94851 1124 aa18.55■□□□□ 0.56
CLSTN3-210ENST00000540931 GLP2RO95838 553 aa18.55■□□□□ 0.56
CLSTN3-210ENST00000540931 NPR3P17342 541 aa18.55■□□□□ 0.56
CLSTN3-210ENST00000540931 BDNFP23560 247 aa18.55■□□□□ 0.56
CLSTN3-210ENST00000540931 GTF2F1P35269 517 aaKnown RBP eCLIP18.55■□□□□ 0.56
CLSTN3-210ENST00000540931 KRT9P35527 623 aa18.55■□□□□ 0.56
CLSTN3-210ENST00000540931 JAM2P57087 298 aa18.55■□□□□ 0.56
CLSTN3-210ENST00000540931 BST2Q10589 180 aaKnown RBP18.55■□□□□ 0.56
CLSTN3-210ENST00000540931 TWF1Q12792 350 aa18.55■□□□□ 0.56
CLSTN3-210ENST00000540931 SMAD4Q13485 552 aaKnown RBP18.55■□□□□ 0.56
CLSTN3-210ENST00000540931 LEXMQ3ZCV2 418 aa18.55■□□□□ 0.56
CLSTN3-210ENST00000540931 CYP4A22Q5TCH4 519 aa18.55■□□□□ 0.56
CLSTN3-210ENST00000540931 GAS2L3Q86XJ1 694 aa18.55■□□□□ 0.56
CLSTN3-210ENST00000540931 FUKQ8N0W3 1084 aa18.55■□□□□ 0.56
CLSTN3-210ENST00000540931 SMRP1Q8NCR6 262 aa18.55■□□□□ 0.56
CLSTN3-210ENST00000540931 KAT5Q92993 513 aa18.55■□□□□ 0.56
CLSTN3-210ENST00000540931 PSMG2Q969U7 264 aa18.55■□□□□ 0.56
CLSTN3-210ENST00000540931 ELMO3Q96BJ8 720 aa18.55■□□□□ 0.56
CLSTN3-210ENST00000540931 NOX5Q96PH1 765 aa18.55■□□□□ 0.56
CLSTN3-210ENST00000540931 TWNKQ96RR1 684 aa18.55■□□□□ 0.56
CLSTN3-210ENST00000540931 MIS12Q9H081 205 aa18.55■□□□□ 0.56
CLSTN3-210ENST00000540931 CYLDQ9NQC7 956 aa18.55■□□□□ 0.56
CLSTN3-210ENST00000540931 TMLHEQ9NVH6 421 aa18.55■□□□□ 0.56
CLSTN3-210ENST00000540931 CLEC1BQ9P126 229 aa18.55■□□□□ 0.56
CLSTN3-210ENST00000540931 HMGXB4Q9UGU5 601 aa18.55■□□□□ 0.56
CLSTN3-210ENST00000540931 CLUHO75153 1309 aa18.54■□□□□ 0.56
CLSTN3-210ENST00000540931 GOLGA6L6A8MZA4 724 aa18.54■□□□□ 0.56
CLSTN3-210ENST00000540931 SEC24AO95486 1093 aa18.54■□□□□ 0.56
CLSTN3-210ENST00000540931 SPATA31D3P0C874 917 aa18.54■□□□□ 0.56
CLSTN3-210ENST00000540931 CYP2F1P24903 491 aa18.54■□□□□ 0.56
CLSTN3-210ENST00000540931 ZBED6P86452 979 aa18.54■□□□□ 0.56
CLSTN3-210ENST00000540931 PPP1R26Q5T8A7 1209 aaPredicted RBP18.54■□□□□ 0.56
CLSTN3-210ENST00000540931 GJB7Q6PEY0 223 aa18.54■□□□□ 0.56
CLSTN3-210ENST00000540931 SPATA31D4Q6ZUB0 917 aa18.54■□□□□ 0.56
CLSTN3-210ENST00000540931 DENND5BQ6ZUT9 1274 aa18.54■□□□□ 0.56
CLSTN3-210ENST00000540931 SCN4BQ8IWT1 228 aa18.54■□□□□ 0.56
CLSTN3-210ENST00000540931 C12orf29Q8N999 325 aa18.54■□□□□ 0.56
CLSTN3-210ENST00000540931 MSANTD4Q8NCY6 345 aa18.54■□□□□ 0.56
CLSTN3-210ENST00000540931 STK32AQ8WU08 396 aa18.54■□□□□ 0.56
CLSTN3-210ENST00000540931 ZNF606Q8WXB4 792 aa18.54■□□□□ 0.56
CLSTN3-210ENST00000540931 SMG7Q92540 1137 aaKnown RBP18.54■□□□□ 0.56
CLSTN3-210ENST00000540931 TRMT2BQ96GJ1 504 aaKnown RBP18.54■□□□□ 0.56
CLSTN3-210ENST00000540931 ZNF518BQ9C0D4 1074 aa18.54■□□□□ 0.56
CLSTN3-210ENST00000540931 GPR88Q9GZN0 384 aa18.54■□□□□ 0.56
CLSTN3-210ENST00000540931 PDCL3Q9H2J4 239 aa18.54■□□□□ 0.56
CLSTN3-210ENST00000540931 NLRC4Q9NPP4 1024 aa18.54■□□□□ 0.56
CLSTN3-210ENST00000540931 FAM49BQ9NUQ9 324 aa18.54■□□□□ 0.56
CLSTN3-210ENST00000540931 CAPN11Q9UMQ6 739 aa18.54■□□□□ 0.56
CLSTN3-210ENST00000540931 PCDHGC3Q9UN70 934 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms