RNA–Protein interactions for RNA: ENST00000540846.6

SMAD3-204, Transcript of SMAD family member 3, humanhuman

TSL 1 (best) BASIC

Gene SMAD3, Length 1,567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-204ENST00000540846 ALG3Q92685 438 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 CLP1Q92989 425 aaKnown RBP13.2□□□□□ -0.3
SMAD3-204ENST00000540846 FAM193BQ96PV7 902 aaPredicted RBP13.2□□□□□ -0.3
SMAD3-204ENST00000540846 TWNKQ96RR1 684 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 RAD9AQ99638 391 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 C11orf70Q9BRQ4 267 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 VN1R3Q9BXE9 311 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 MTIF3Q9H2K0 278 aaKnown RBP13.2□□□□□ -0.3
SMAD3-204ENST00000540846 ADAM28Q9UKQ2 775 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 INSL6Q9Y581 213 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 SCINQ9Y6U3 715 aa13.2□□□□□ -0.3
SMAD3-204ENST00000540846 CCDC66A2RUB6 948 aa13.19□□□□□ -0.3
SMAD3-204ENST00000540846 TMEM110-MUSTN1A8MSY1 372 aa13.19□□□□□ -0.3
SMAD3-204ENST00000540846 NT5C1B-RDH14C9J2C7 533 aa13.19□□□□□ -0.3
SMAD3-204ENST00000540846 CYB561D2O14569 222 aa13.19□□□□□ -0.3
SMAD3-204ENST00000540846 GABRDO14764 452 aa13.19□□□□□ -0.3
SMAD3-204ENST00000540846 MED7O43513 233 aa13.19□□□□□ -0.3
SMAD3-204ENST00000540846 ATP8B1O43520 1251 aa13.19□□□□□ -0.3
SMAD3-204ENST00000540846 ARHGEF15O94989 841 aa13.19□□□□□ -0.3
SMAD3-204ENST00000540846 CYP11A1P05108 521 aa13.19□□□□□ -0.3
SMAD3-204ENST00000540846 CALB1P05937 261 aa13.19□□□□□ -0.3
SMAD3-204ENST00000540846 CLUL1Q15846 466 aa13.19□□□□□ -0.3
SMAD3-204ENST00000540846 ZNF394Q53GI3 561 aa13.19□□□□□ -0.3
SMAD3-204ENST00000540846 WSCD1Q658N2 575 aa13.19□□□□□ -0.3
SMAD3-204ENST00000540846 PLEKHA7Q6IQ23 1121 aa13.19□□□□□ -0.3
SMAD3-204ENST00000540846 KCNT2Q6UVM3 1135 aa13.19□□□□□ -0.3
SMAD3-204ENST00000540846 MMS22LQ6ZRQ5 1243 aa13.19□□□□□ -0.3
SMAD3-204ENST00000540846 OSTM1Q86WC4 334 aa13.19□□□□□ -0.3
SMAD3-204ENST00000540846 COLGALT1Q8NBJ5 622 aa13.19□□□□□ -0.3
SMAD3-204ENST00000540846 SLC4A11Q8NBS3 891 aa13.19□□□□□ -0.3
SMAD3-204ENST00000540846 RNPC3Q96LT9 517 aaKnown RBP13.19□□□□□ -0.3
SMAD3-204ENST00000540846 LRRC1Q9BTT6 524 aa13.19□□□□□ -0.3
SMAD3-204ENST00000540846 GPR62Q9BZJ7 368 aa13.19□□□□□ -0.3
SMAD3-204ENST00000540846 LHX5Q9H2C1 402 aa13.19□□□□□ -0.3
SMAD3-204ENST00000540846 MRPL47Q9HD33 250 aaKnown RBP13.19□□□□□ -0.3
SMAD3-204ENST00000540846 ANAPC7Q9UJX3 599 aa13.19□□□□□ -0.3
SMAD3-204ENST00000540846 TRANK1O15050 2925 aa13.18□□□□□ -0.3
SMAD3-204ENST00000540846 ATG2AQ2TAZ0 1938 aa13.18□□□□□ -0.3
SMAD3-204ENST00000540846 GRXCR1A8MXD5 290 aa13.18□□□□□ -0.3
SMAD3-204ENST00000540846 CCDC188H7C350 402 aa13.18□□□□□ -0.3
SMAD3-204ENST00000540846 HCRTO43612 131 aa13.18□□□□□ -0.3
SMAD3-204ENST00000540846 SPOPO43791 374 aa13.18□□□□□ -0.3
SMAD3-204ENST00000540846 SEC31AO94979 1220 aaKnown RBP13.18□□□□□ -0.3
SMAD3-204ENST00000540846 ALDH2P05091 517 aa13.18□□□□□ -0.3
SMAD3-204ENST00000540846 FAM163BP0C2L3 166 aa13.18□□□□□ -0.3
SMAD3-204ENST00000540846 WARSP23381 471 aaKnown RBP13.18□□□□□ -0.3
SMAD3-204ENST00000540846 SSTR3P32745 418 aaPredicted RBP13.18□□□□□ -0.3
SMAD3-204ENST00000540846 MARCKSL1P49006 195 aa13.18□□□□□ -0.3
SMAD3-204ENST00000540846 PEX5P50542 639 aa13.18□□□□□ -0.3
SMAD3-204ENST00000540846 LONRF2Q1L5Z9 754 aa13.18□□□□□ -0.3
SMAD3-204ENST00000540846 BEND6Q5SZJ8 279 aaPredicted RBP13.18□□□□□ -0.3
SMAD3-204ENST00000540846 ADGRF2Q8IZF7 708 aa13.18□□□□□ -0.3
SMAD3-204ENST00000540846 SLC39A11Q8N1S5 342 aa13.18□□□□□ -0.3
SMAD3-204ENST00000540846 C1orf131Q8NDD1 294 aaKnown RBP13.18□□□□□ -0.3
SMAD3-204ENST00000540846 APPL2Q8NEU8 664 aa13.18□□□□□ -0.3
SMAD3-204ENST00000540846 KRT35Q92764 455 aa13.18□□□□□ -0.3
SMAD3-204ENST00000540846 BTBD6Q96KE9 485 aa13.18□□□□□ -0.3
SMAD3-204ENST00000540846 NAP1L3Q99457 506 aaPredicted RBP13.18□□□□□ -0.3
SMAD3-204ENST00000540846 RTP3Q9BQQ7 232 aa13.18□□□□□ -0.3
SMAD3-204ENST00000540846 ELOVL4Q9GZR5 314 aa13.18□□□□□ -0.3
SMAD3-204ENST00000540846 PRO3102Q9H379 93 aa13.18□□□□□ -0.3
SMAD3-204ENST00000540846 BARX2Q9UMQ3 279 aaPredicted RBP13.18□□□□□ -0.3
SMAD3-204ENST00000540846 FAN1Q9Y2M0 1017 aa13.18□□□□□ -0.3
SMAD3-204ENST00000540846 CEP83Q9Y592 693 aa13.18□□□□□ -0.3
SMAD3-204ENST00000540846 HUS1O60921 280 aa13.17□□□□□ -0.3
SMAD3-204ENST00000540846 CD19P15391 556 aa13.17□□□□□ -0.3
SMAD3-204ENST00000540846 LAG3P18627 525 aa13.17□□□□□ -0.3
SMAD3-204ENST00000540846 TNFRSF8P28908 595 aa13.17□□□□□ -0.3
SMAD3-204ENST00000540846 MAN1A1P33908 653 aa13.17□□□□□ -0.3
SMAD3-204ENST00000540846 BMP8BP34820 402 aa13.17□□□□□ -0.3
SMAD3-204ENST00000540846 SLC1A1P43005 524 aa13.17□□□□□ -0.3
SMAD3-204ENST00000540846 NDST1P52848 882 aa13.17□□□□□ -0.3
SMAD3-204ENST00000540846 RABGGTBP53611 331 aa13.17□□□□□ -0.3
SMAD3-204ENST00000540846 MAMLD1Q13495 774 aa13.17□□□□□ -0.3
SMAD3-204ENST00000540846 LLGL2Q6P1M3 1020 aa13.17□□□□□ -0.3
SMAD3-204ENST00000540846 FUT10Q6P4F1 479 aa13.17□□□□□ -0.3
SMAD3-204ENST00000540846 HDAC7Q8WUI4 952 aa13.17□□□□□ -0.3
SMAD3-204ENST00000540846 IGSF21Q96ID5 467 aa13.17□□□□□ -0.3
SMAD3-204ENST00000540846 ZNF558Q96NG5 402 aa13.17□□□□□ -0.3
SMAD3-204ENST00000540846 COLEC11Q9BWP8 271 aa13.17□□□□□ -0.3
SMAD3-204ENST00000540846 UBE2OQ9C0C9 1292 aaKnown RBP13.17□□□□□ -0.3
SMAD3-204ENST00000540846 PARVAQ9NVD7 372 aa13.17□□□□□ -0.3
SMAD3-204ENST00000540846 STIM2Q9P246 746 aa13.17□□□□□ -0.3
SMAD3-204ENST00000540846 DMGDHQ9UI17 866 aaKnown RBP13.17□□□□□ -0.3
SMAD3-204ENST00000540846 PCDHB8Q9UN66 801 aa13.17□□□□□ -0.3
SMAD3-204ENST00000540846 PCDHA3Q9Y5H8 950 aa13.17□□□□□ -0.3
SMAD3-204ENST00000540846 TIMM13Q9Y5L4 95 aaPredicted RBP13.17□□□□□ -0.3
SMAD3-204ENST00000540846 TCRBV5S1A1TA0A578 114 aa13.16□□□□□ -0.3
SMAD3-204ENST00000540846 TLL1O43897 1013 aa13.16□□□□□ -0.3
SMAD3-204ENST00000540846 PROSCO94903 275 aa13.16□□□□□ -0.3
SMAD3-204ENST00000540846 FGGP02679 453 aa13.16□□□□□ -0.3
SMAD3-204ENST00000540846 VDRP11473 427 aa13.16□□□□□ -0.3
SMAD3-204ENST00000540846 ODC1P11926 461 aa13.16□□□□□ -0.3
SMAD3-204ENST00000540846 TYMPP19971 482 aa13.16□□□□□ -0.3
SMAD3-204ENST00000540846 FGFR3P22607 806 aa13.16□□□□□ -0.3
SMAD3-204ENST00000540846 LMO2P25791 158 aa13.16□□□□□ -0.3
SMAD3-204ENST00000540846 TKTP29401 623 aaKnown RBP13.16□□□□□ -0.3
SMAD3-204ENST00000540846 ALDH7A1P49419 539 aaKnown RBP13.16□□□□□ -0.3
SMAD3-204ENST00000540846 RNASE9P60153 205 aaKnown RBP13.16□□□□□ -0.3
SMAD3-204ENST00000540846 ORC1Q13415 861 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms