RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 KRT6CP48668 564 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 DSTNP60981 165 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 YWHAGP61981 247 aaKnown RBP eCLIP9.88□□□□□ -0.83
CLIP1-214ENST00000540539 DPYSQ14117 519 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 TRIP10Q15642 601 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 INSCQ1MX18 579 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 TRIM16LQ309B1 348 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 ZNF568Q3ZCX4 644 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 SLC9C1Q4G0N8 1177 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 XKR5Q6UX68 686 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 LURAP1LQ8IV03 231 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 CCDC24Q8N4L8 307 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 TNIP2Q8NFZ5 429 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 RPGRQ92834 1020 aaKnown RBP9.88□□□□□ -0.83
CLIP1-214ENST00000540539 MTBPQ96DY7 904 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 WNK4Q96J92 1243 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 AIFM2Q9BRQ8 373 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 TP63Q9H3D4 680 aaPredicted RBP9.88□□□□□ -0.83
CLIP1-214ENST00000540539 FBXO6Q9NRD1 293 aaPredicted RBP9.88□□□□□ -0.83
CLIP1-214ENST00000540539 MTPAPQ9NVV4 582 aaKnown RBP eCLIP9.88□□□□□ -0.83
CLIP1-214ENST00000540539 HEY2Q9UBP5 337 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 A0A087X0T9 212 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 FAM187AA6NFU0 413 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 FAM47DPA6NHR8 397 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 SNTNA6NMZ2 147 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 GOLGA8MH3BSY2 632 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 TLR2O60603 784 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 KLHL2O95198 593 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 FAM228BP0C875 321 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 WEE1P30291 646 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 IREB2P48200 963 aaKnown RBP9.88□□□□□ -0.83
CLIP1-214ENST00000540539 PRKCEQ02156 737 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 CREB5Q02930 508 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 SMU1Q2TAY7 513 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 SGO2Q562F6 1265 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 PRR5LQ6MZQ0 368 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 GALNT7Q86SF2 657 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 CCDC25Q86WR0 208 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 MICU3Q86XE3 530 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 TBC1D15Q8TC07 691 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 SLC16A10Q8TF71 515 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 C7orf43Q8WVR3 580 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 ATP2A3Q93084 1043 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 RUNDC3BQ96NL0 473 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 IMPG2Q9BZV3 1241 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 NAPBQ9H115 298 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 FOXP1Q9H334 677 aaPredicted RBP9.88□□□□□ -0.83
CLIP1-214ENST00000540539 C10orf88Q9H8K7 445 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 ERVK-5Q9HDB9 667 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 PCDH12Q9NPG4 1184 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 ERGIC3Q9Y282 383 aa9.88□□□□□ -0.83
CLIP1-214ENST00000540539 BICDL2A1A5D9 508 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 SYCE1LA8MT33 242 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 TM7SF2O76062 418 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 ZNF23P17027 643 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 CCNCP24863 283 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 GUCY1A2P33402 732 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 BMPR1AP36894 532 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 CTSWP56202 376 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 LRRC63Q05C16 580 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 MAPK7Q13164 816 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 SLC18A3Q16572 532 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 PDK4Q16654 411 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 GRAMD1BQ3KR37 738 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 SLC10A5Q5PT55 438 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 AAGABQ6PD74 315 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 EPM2AIP1Q7L775 607 aaPredicted RBP9.87□□□□□ -0.83
CLIP1-214ENST00000540539 ADAT2Q7Z6V5 191 aaKnown RBP9.87□□□□□ -0.83
CLIP1-214ENST00000540539 GLRX5Q86SX6 157 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 GALNT13Q8IUC8 556 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 KBTBD3Q8NAB2 608 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 GALNT6Q8NCL4 622 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 RFWD2Q8NHY2 731 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.87□□□□□ -0.83
CLIP1-214ENST00000540539 GSDMBQ8TAX9 411 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 ZNF398Q8TD17 642 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 SNX29Q8TEQ0 813 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 WASF1Q92558 559 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 TMA16Q96EY4 203 aaKnown RBP9.87□□□□□ -0.83
CLIP1-214ENST00000540539 CNBD2Q96M20 576 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 CSRNP1Q96S65 589 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 C17orf80Q9BSJ5 609 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 HERC2P3Q9BVR0 1158 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 SLC26A6Q9BXS9 759 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 CDC42EP4Q9H3Q1 356 aaKnown RBP9.87□□□□□ -0.83
CLIP1-214ENST00000540539 GMIPQ9P107 970 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 TBK1Q9UHD2 729 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 ATPIF1Q9UII2 106 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 PLA2G4CQ9UP65 541 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 FAM205CA6NFA0 338 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 B2RBV5 119 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 H3BRJ5 948 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 IDH3BO43837 385 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 ZNF254O75437 659 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 CSF1RP07333 972 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 SRGAP2CP0DJJ0 459 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 SRGAP2BP0DMP2 458 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 FGFR1P11362 822 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 PDE6AP16499 860 aa9.87□□□□□ -0.83
CLIP1-214ENST00000540539 IL32P24001 234 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms