RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 EHMT1Q9H9B1 1298 aa13.43□□□□□ -0.26
SFSWAP-209ENST00000540469 PCDH9Q9HC56 1237 aa13.43□□□□□ -0.26
SFSWAP-209ENST00000540469 XPO7Q9UIA9 1087 aaKnown RBP13.43□□□□□ -0.26
SFSWAP-209ENST00000540469 DCAF8L1A6NGE4 600 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 ASLP04424 464 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 POLR2MP0CAP2 368 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 ARP10275 920 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 UQCRBP14927 111 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 PEX2P28328 305 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 RGS2P41220 211 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 ZNF200P98182 395 aaPredicted RBP13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 BST1Q10588 318 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 SFT2D3Q587I9 215 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 BRDTQ58F21 947 aaPredicted RBP13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 TMEM270Q6UE05 265 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 RBM44Q6ZP01 1051 aaKnown RBP13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 NCAPG2Q86XI2 1143 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 TRIM42Q8IWZ5 723 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 GCNAQ96QF7 691 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 HAPLN3Q96S86 360 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 KCNK4Q9NYG8 393 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 SOX13Q9UN79 622 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 IVNS1ABPQ9Y6Y0 642 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 SMIM31A0A1B0GVY4 71 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 TRIM49D1C9J1S8 452 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 E5RJQ4 531 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 TOM1L1O75674 476 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 PABPC4LP0CB38 370 aaKnown RBP13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 VCLP18206 1134 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 ATP2B4P23634 1241 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 TM4SF1P30408 202 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 DLG1Q12959 904 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 MSS51Q4VC12 460 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 CEP55Q53EZ4 464 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 USP6NLQ92738 828 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 CLMNQ96JQ2 1002 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 SERAC1Q96JX3 654 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 SRPK1Q96SB4 655 aaKnown RBP13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 SENP7Q9BQF6 1050 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 ZNF395Q9H8N7 513 aaPredicted RBP13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 NARFQ9UHQ1 456 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 MYH14Q7Z406 1995 aaKnown RBP13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 ZSCAN9O15535 394 aaPredicted RBP13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 CLPTM1O96005 669 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 PENKP01210 267 aaPredicted RBP13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 UNGP13051 313 aaPredicted RBP13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 GYS1P13807 737 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 TCF4P15884 667 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 FUT4P22083 530 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 AOC3Q16853 763 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 PABPC1LQ4VXU2 614 aaKnown RBP13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 HSP90AA5PQ58FG0 334 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 SPOCD1Q6ZMY3 1216 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 LARGE2Q8N3Y3 721 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 PRPF31Q8WWY3 499 aaKnown RBP13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 SLITRK1Q96PX8 696 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 S100A14Q9HCY8 104 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 IP6K2Q9UHH9 426 aa13.42□□□□□ -0.26
SFSWAP-209ENST00000540469 IGLV3-22A0A075B6J6 115 aa13.41□□□□□ -0.26
SFSWAP-209ENST00000540469 TMEM150BA6NC51 233 aa13.41□□□□□ -0.26
SFSWAP-209ENST00000540469 COQ9O75208 318 aa13.41□□□□□ -0.26
SFSWAP-209ENST00000540469 NDUFB10O96000 172 aa13.41□□□□□ -0.26
SFSWAP-209ENST00000540469 GNA15P30679 374 aa13.41□□□□□ -0.26
SFSWAP-209ENST00000540469 CHN2P52757 468 aa13.41□□□□□ -0.26
SFSWAP-209ENST00000540469 INHBCP55103 352 aa13.41□□□□□ -0.26
SFSWAP-209ENST00000540469 MAMLD1Q13495 774 aa13.41□□□□□ -0.26
SFSWAP-209ENST00000540469 NCOA4Q13772 614 aa13.41□□□□□ -0.26
SFSWAP-209ENST00000540469 KBTBD12Q3ZCT8 623 aa13.41□□□□□ -0.26
SFSWAP-209ENST00000540469 FEZF2Q8TBJ5 459 aa13.41□□□□□ -0.26
SFSWAP-209ENST00000540469 FAM163AQ96GL9 167 aaPredicted RBP13.41□□□□□ -0.26
SFSWAP-209ENST00000540469 APOL6Q9BWW8 343 aa13.41□□□□□ -0.26
SFSWAP-209ENST00000540469 TMOD2Q9NZR1 351 aa13.41□□□□□ -0.26
SFSWAP-209ENST00000540469 NDUFA13Q9P0J0 144 aa13.41□□□□□ -0.26
SFSWAP-209ENST00000540469 GAKO14976 1311 aa13.41□□□□□ -0.26
SFSWAP-209ENST00000540469 GRIN3BO60391 1043 aa13.41□□□□□ -0.26
SFSWAP-209ENST00000540469 TRPA1O75762 1119 aa13.41□□□□□ -0.26
SFSWAP-209ENST00000540469 CYP3A4P08684 503 aa13.41□□□□□ -0.26
SFSWAP-209ENST00000540469 C6orf222P0C671 652 aaPredicted RBP13.41□□□□□ -0.26
SFSWAP-209ENST00000540469 ADRA2BP18089 450 aa13.41□□□□□ -0.26
SFSWAP-209ENST00000540469 GPC3P51654 580 aa13.41□□□□□ -0.26
SFSWAP-209ENST00000540469 NFIAQ12857 509 aa13.41□□□□□ -0.26
SFSWAP-209ENST00000540469 PTP4A2Q12974 167 aa13.41□□□□□ -0.26
SFSWAP-209ENST00000540469 MAP3K21Q5TCX8 1036 aa13.41□□□□□ -0.26
SFSWAP-209ENST00000540469 CIAPIN1Q6FI81 312 aa13.41□□□□□ -0.26
SFSWAP-209ENST00000540469 RNF168Q8IYW5 571 aaPredicted RBP13.41□□□□□ -0.26
SFSWAP-209ENST00000540469 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.41□□□□□ -0.26
SFSWAP-209ENST00000540469 MCEEQ96PE7 176 aa13.41□□□□□ -0.26
SFSWAP-209ENST00000540469 YIPF2Q9BWQ6 316 aa13.41□□□□□ -0.26
SFSWAP-209ENST00000540469 TSPYL2Q9H2G4 693 aaPredicted RBP13.41□□□□□ -0.26
SFSWAP-209ENST00000540469 SPATA31A6Q5VVP1 1343 aa13.41□□□□□ -0.26
SFSWAP-209ENST00000540469 PDLIM1O00151 329 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 HNRNPDLO14979 420 aaKnown RBP13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 ZNF862O60290 1169 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 RPL7AP62424 266 aaKnown RBP13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 SMTNL2Q2TAL5 461 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 PDSS2Q86YH6 399 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 EFCAB3Q8N7B9 438 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 FAM172AQ8WUF8 416 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 DCAKDQ8WVC6 231 aa13.4□□□□□ -0.26
SFSWAP-209ENST00000540469 NCSTNQ92542 709 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms