RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 ACAP3Q96P50 834 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 MSTO1Q9BUK6 570 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 MRIQ9BWK5 157 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 NRAPQ86VF7 1730 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 PTPRJQ12913 1337 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 ARHGAP42A6NI28 874 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 VNN1O95497 513 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 C4BPAP04003 597 aaKnown RBP11.78□□□□□ -0.52
SYNE1-237ENST00000539504 MMP8P22894 467 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 CDKN2BP42772 138 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 RAB27AP51159 221 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 ALDH18A1P54886 795 aaKnown RBP11.78□□□□□ -0.52
SYNE1-237ENST00000539504 IRX4P78413 519 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 NCOA4Q13772 614 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 PSMD6Q15008 389 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 LRRC36Q1X8D7 754 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 IZUMO2Q6UXV1 221 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 PPP1R14CQ8TAE6 165 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 ATP6V0A1Q93050 837 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 TMEM143Q96AN5 459 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 FAM136AQ96C01 138 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 MECRQ9BV79 373 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 SSU72Q9NP77 194 aaKnown RBP11.78□□□□□ -0.52
SYNE1-237ENST00000539504 SNCAIPQ9Y6H5 919 aa11.78□□□□□ -0.52
SYNE1-237ENST00000539504 TRIM49D1C9J1S8 452 aa11.77□□□□□ -0.52
SYNE1-237ENST00000539504 SPECC1L-ADORA2AF8WAN1 911 aa11.77□□□□□ -0.52
SYNE1-237ENST00000539504 TMEM63AO94886 807 aa11.77□□□□□ -0.52
SYNE1-237ENST00000539504 GSTA2P09210 222 aa11.77□□□□□ -0.52
SYNE1-237ENST00000539504 TBXAS1P24557 533 aaPredicted RBP11.77□□□□□ -0.52
SYNE1-237ENST00000539504 CAP2P40123 477 aa11.77□□□□□ -0.52
SYNE1-237ENST00000539504 EIF3EP60228 445 aaKnown RBP11.77□□□□□ -0.52
SYNE1-237ENST00000539504 CFAP157Q5JU67 520 aa11.77□□□□□ -0.52
SYNE1-237ENST00000539504 ZBTB41Q5SVQ8 909 aa11.77□□□□□ -0.52
SYNE1-237ENST00000539504 CIAPIN1Q6FI81 312 aa11.77□□□□□ -0.52
SYNE1-237ENST00000539504 GPAT2Q6NUI2 795 aa11.77□□□□□ -0.52
SYNE1-237ENST00000539504 PHC3Q8NDX5 983 aa11.77□□□□□ -0.52
SYNE1-237ENST00000539504 DCAKDQ8WVC6 231 aa11.77□□□□□ -0.52
SYNE1-237ENST00000539504 HSPH1Q92598 858 aa11.77□□□□□ -0.52
SYNE1-237ENST00000539504 NDE1Q9NXR1 346 aa11.77□□□□□ -0.52
SYNE1-237ENST00000539504 KLRG2A4D1S0 409 aaPredicted RBP11.77□□□□□ -0.53
SYNE1-237ENST00000539504 KBTBD13C9JR72 458 aa11.77□□□□□ -0.53
SYNE1-237ENST00000539504 NEK3P51956 506 aa11.77□□□□□ -0.53
SYNE1-237ENST00000539504 ZNF252P-AS1Q0IIN9 211 aa11.77□□□□□ -0.53
SYNE1-237ENST00000539504 PIGHQ14442 188 aaPredicted RBP11.77□□□□□ -0.53
SYNE1-237ENST00000539504 HADHQ16836 314 aaKnown RBP11.77□□□□□ -0.53
SYNE1-237ENST00000539504 OR52E8Q6IFG1 317 aa11.77□□□□□ -0.53
SYNE1-237ENST00000539504 NIPA1Q7RTP0 329 aa11.77□□□□□ -0.53
SYNE1-237ENST00000539504 UNC45BQ8IWX7 931 aa11.77□□□□□ -0.53
SYNE1-237ENST00000539504 CDAN1Q8IWY9 1227 aa11.77□□□□□ -0.53
SYNE1-237ENST00000539504 KCTD6Q8NC69 237 aa11.77□□□□□ -0.53
SYNE1-237ENST00000539504 MCPH1Q8NEM0 835 aa11.77□□□□□ -0.53
SYNE1-237ENST00000539504 OR5B17Q8NGF7 314 aa11.77□□□□□ -0.53
SYNE1-237ENST00000539504 DEPTORQ8TB45 409 aa11.77□□□□□ -0.53
SYNE1-237ENST00000539504 APOPT1Q96IL0 206 aa11.77□□□□□ -0.53
SYNE1-237ENST00000539504 WDR35Q9P2L0 1181 aa11.77□□□□□ -0.53
SYNE1-237ENST00000539504 ZNF212Q9UDV6 495 aa11.77□□□□□ -0.53
SYNE1-237ENST00000539504 MCF2LO15068 1137 aa11.77□□□□□ -0.53
SYNE1-237ENST00000539504 NPM3O75607 178 aaKnown RBP11.77□□□□□ -0.53
SYNE1-237ENST00000539504 RBP3P10745 1247 aa11.77□□□□□ -0.53
SYNE1-237ENST00000539504 PGM5Q15124 567 aa11.77□□□□□ -0.53
SYNE1-237ENST00000539504 DARS2Q6PI48 645 aaKnown RBP11.77□□□□□ -0.53
SYNE1-237ENST00000539504 SCUBE1Q8IWY4 988 aa11.77□□□□□ -0.53
SYNE1-237ENST00000539504 SAMD3Q8N6K7 520 aa11.77□□□□□ -0.53
SYNE1-237ENST00000539504 CEP120Q8N960 986 aa11.77□□□□□ -0.53
SYNE1-237ENST00000539504 SKA1Q96BD8 255 aa11.77□□□□□ -0.53
SYNE1-237ENST00000539504 TARS2Q9BW92 718 aaKnown RBP11.77□□□□□ -0.53
SYNE1-237ENST00000539504 ZNRF3Q9ULT6 936 aa11.77□□□□□ -0.53
SYNE1-237ENST00000539504 SCAF8Q9UPN6 1271 aaKnown RBP11.77□□□□□ -0.53
SYNE1-237ENST00000539504 K7ERI5 159 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 LGR5O75473 907 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 FAM155BO75949 473 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 DLDP09622 509 aaKnown RBP11.76□□□□□ -0.53
SYNE1-237ENST00000539504 RARBP10826 455 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 LRRC38Q5VT99 294 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 PPP1R2P3Q6NXS1 205 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 PRPF39Q86UA1 669 aaKnown RBP11.76□□□□□ -0.53
SYNE1-237ENST00000539504 SLC35B2Q8TB61 432 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 RNF217Q8TC41 542 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 SRPK1Q96SB4 655 aaKnown RBP11.76□□□□□ -0.53
SYNE1-237ENST00000539504 KCNK13Q9HB14 408 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 ASB3Q9Y575 518 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 STRCQ7RTU9 1775 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 TCRBV9S1A1TA0A576 114 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 ZNF862O60290 1169 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 DGAT1O75907 488 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 WEE2P0C1S8 567 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 DLGAP5Q15398 846 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 C15orf39Q6ZRI6 1047 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 TMPRSS6Q8IU80 811 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 KBTBD2Q8IY47 623 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 EMC1Q8N766 993 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 TTC13Q8NBP0 860 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 RBM15BQ8NDT2 890 aaKnown RBP11.76□□□□□ -0.53
SYNE1-237ENST00000539504 CLEC4DQ8WXI8 215 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 MTBPQ96DY7 904 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 SMYD3Q9H7B4 428 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 FARP1Q9Y4F1 1045 aaPredicted RBP11.76□□□□□ -0.53
SYNE1-237ENST00000539504 FOCADQ5VW36 1801 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 H7C0C1 242 aa11.76□□□□□ -0.53
SYNE1-237ENST00000539504 OPHN1O60890 802 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms