RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 BICDL2A1A5D9 508 aa13.44□□□□□ -0.26
CLSTN3-208ENST00000538933 K7ERI5 159 aa13.44□□□□□ -0.26
CLSTN3-208ENST00000538933 PODXLO00592 558 aa13.44□□□□□ -0.26
CLSTN3-208ENST00000538933 RNF40O75150 1001 aa13.44□□□□□ -0.26
CLSTN3-208ENST00000538933 EGFP01133 1207 aa13.44□□□□□ -0.26
CLSTN3-208ENST00000538933 PRCPP42785 496 aa13.44□□□□□ -0.26
CLSTN3-208ENST00000538933 PLCB2Q00722 1185 aa13.44□□□□□ -0.26
CLSTN3-208ENST00000538933 EHHADHQ08426 723 aa13.44□□□□□ -0.26
CLSTN3-208ENST00000538933 PAK1Q13153 545 aa13.44□□□□□ -0.26
CLSTN3-208ENST00000538933 MAPK6Q16659 721 aa13.44□□□□□ -0.26
CLSTN3-208ENST00000538933 DCAF4L1Q3SXM0 396 aa13.44□□□□□ -0.26
CLSTN3-208ENST00000538933 ZC2HC1CQ53FD0 456 aaPredicted RBP13.44□□□□□ -0.26
CLSTN3-208ENST00000538933 PMS2CLQ68D20 193 aa13.44□□□□□ -0.26
CLSTN3-208ENST00000538933 ZNF720Q7Z2F6 126 aa13.44□□□□□ -0.26
CLSTN3-208ENST00000538933 GUF1Q8N442 669 aaKnown RBP13.44□□□□□ -0.26
CLSTN3-208ENST00000538933 BPIFB1Q8TDL5 484 aa13.44□□□□□ -0.26
CLSTN3-208ENST00000538933 NELFBQ8WX92 580 aa13.44□□□□□ -0.26
CLSTN3-208ENST00000538933 EZH1Q92800 747 aaPredicted RBP13.44□□□□□ -0.26
CLSTN3-208ENST00000538933 DHTKD1Q96HY7 919 aaPredicted RBP13.44□□□□□ -0.26
CLSTN3-208ENST00000538933 ACCSQ96QU6 501 aa13.44□□□□□ -0.26
CLSTN3-208ENST00000538933 HPS4Q9NQG7 708 aa13.44□□□□□ -0.26
CLSTN3-208ENST00000538933 SPAARA0A1B0GVQ0 90 aa13.43□□□□□ -0.26
CLSTN3-208ENST00000538933 BECN2A8MW95 431 aa13.43□□□□□ -0.26
CLSTN3-208ENST00000538933 MATR3P43243 847 aaKnown RBP eCLIP13.43□□□□□ -0.26
CLSTN3-208ENST00000538933 TPM4P67936 248 aa13.43□□□□□ -0.26
CLSTN3-208ENST00000538933 GRSF1Q12849 480 aaKnown RBP eCLIP13.43□□□□□ -0.26
CLSTN3-208ENST00000538933 COL28A1Q2UY09 1125 aa13.43□□□□□ -0.26
CLSTN3-208ENST00000538933 UAP1L1Q3KQV9 507 aa13.43□□□□□ -0.26
CLSTN3-208ENST00000538933 CT47A1Q5JQC4 288 aaPredicted RBP13.43□□□□□ -0.26
CLSTN3-208ENST00000538933 C11orf57Q6ZUT1 292 aaPredicted RBP13.43□□□□□ -0.26
CLSTN3-208ENST00000538933 SYT13Q7L8C5 426 aa13.43□□□□□ -0.26
CLSTN3-208ENST00000538933 HS2ST1Q7LGA3 356 aa13.43□□□□□ -0.26
CLSTN3-208ENST00000538933 CEP120Q8N960 986 aa13.43□□□□□ -0.26
CLSTN3-208ENST00000538933 TMEM161BQ8NDZ6 487 aa13.43□□□□□ -0.26
CLSTN3-208ENST00000538933 NTPCRQ9BSD7 190 aaKnown RBP13.43□□□□□ -0.26
CLSTN3-208ENST00000538933 ST6GALNAC4Q9H4F1 302 aa13.43□□□□□ -0.26
CLSTN3-208ENST00000538933 GKN1Q9NS71 199 aa13.43□□□□□ -0.26
CLSTN3-208ENST00000538933 INVSQ9Y283 1065 aa13.43□□□□□ -0.26
CLSTN3-208ENST00000538933 SMTNL1A8MU46 457 aa13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 UPK3BL1B0FP48 263 aa13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 UPK3BL2E5RIL1 263 aa13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 GOLGA6L19H0YKK7 550 aa13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 DPYSL4O14531 572 aa13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 CALUO43852 315 aaPredicted RBP13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 OAZ2O95190 189 aa13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 APBB3O95704 486 aa13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 KCNE1P15382 129 aa13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 BMP6P22004 513 aa13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 RPL9P32969 192 aaKnown RBP13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 ZNF165P49910 485 aa13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 LIG4P49917 911 aa13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 GALK1P51570 392 aa13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 CASP5P51878 434 aa13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 STX17P56962 302 aa13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 GTF2BQ00403 316 aa13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 DUSP4Q13115 394 aa13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 SEMA3BQ13214 749 aa13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 RUNX3Q13761 415 aa13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 KNOP1Q1ED39 458 aaKnown RBP13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 COBLL1Q53SF7 1204 aa13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 GPR158Q5T848 1215 aa13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 NAIF1Q69YI7 327 aaPredicted RBP13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 ZNF280DQ6N043 979 aa13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 DNAJB7Q7Z6W7 309 aaPredicted RBP13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 GLIS3Q8NEA6 775 aa13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 ZNF507Q8TCN5 953 aa13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 SCFD1Q8WVM8 642 aa13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 C18orf25Q96B23 403 aaPredicted RBP13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 FUCA2Q9BTY2 467 aa13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 FGFBP2Q9BYJ0 223 aa13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 TMEM134Q9H6X4 195 aa13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 ARHGAP28Q9P2N2 729 aa13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 EVLQ9UI08 416 aaPredicted RBP13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 TBX20Q9UMR3 447 aa13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 OBSL1O75147 1896 aa13.42□□□□□ -0.26
CLSTN3-208ENST00000538933 CEP192Q8TEP8 1941 aa13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 PPP1R3GB7ZBB8 358 aa13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 HNRNPDLO14979 420 aaKnown RBP13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 OR4Q2P0C623 313 aa13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 CPB1P15086 417 aa13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 CD44P16070 742 aaKnown RBP13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 BCKDHBP21953 392 aa13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 ERCC5P28715 1186 aaPredicted RBP13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 GRM5P41594 1212 aa13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 EPHB3P54753 998 aa13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 FAM193AP78312 1265 aa13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 SIM1P81133 766 aaPredicted RBP13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 ATF7IP2Q5U623 682 aa13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 CENPPQ6IPU0 288 aa13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 EPM2AIP1Q7L775 607 aaPredicted RBP13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 RAB44Q7Z6P3 723 aaPredicted RBP13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 CHCHD4Q8N4Q1 142 aa13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 APPL2Q8NEU8 664 aa13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 GOLGA5Q8TBA6 731 aa13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 PSMG2Q969U7 264 aa13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 FIZ1Q96SL8 496 aa13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 SLC46A2Q9BY10 475 aa13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 MRPL4Q9BYD3 311 aaKnown RBP13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 SMG9Q9H0W8 520 aaKnown RBP13.41□□□□□ -0.26
CLSTN3-208ENST00000538933 ATXN3LQ9H3M9 355 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms