RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 HIST2H2AA3Q6FI13 130 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 FGD2Q7Z6J4 655 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 STKLD1Q8NE28 680 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 FAM118BQ9BPY3 351 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 NT5C1AQ9BXI3 368 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.32□□□□□ -0.76
COL4A6-208ENST00000538570 SMARCAL1Q9NZC9 954 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 DAPK2Q9UIK4 370 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 SLC39A10Q9ULF5 831 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 PCDHB2Q9Y5E7 798 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 SNAP23O00161 211 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 CHRM3P20309 590 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 PTPN7P35236 360 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 COILP38432 576 aaPredicted RBP10.32□□□□□ -0.76
COL4A6-208ENST00000538570 CACNA2D1P54289 1103 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 MYBPC2Q14324 1141 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 FAM83EQ2M2I3 478 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 TSGA10IPQ3SY00 556 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 SV2CQ496J9 727 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 MROH9Q5TGP6 573 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 UGT3A1Q6NUS8 523 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 COL23A1Q86Y22 540 aaPredicted RBP10.32□□□□□ -0.76
COL4A6-208ENST00000538570 STX12Q86Y82 276 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 MMGT1Q8N4V1 131 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 LRRC39Q96DD0 335 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 FRMD8Q9BZ67 464 aaPredicted RBP10.32□□□□□ -0.76
COL4A6-208ENST00000538570 GPR63Q9BZJ6 419 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 KRCC1Q9NPI7 259 aaPredicted RBP10.32□□□□□ -0.76
COL4A6-208ENST00000538570 F8W810 466 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 TBX3O15119 743 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 EIF3DO15371 548 aaKnown RBP eCLIP10.32□□□□□ -0.76
COL4A6-208ENST00000538570 MAP3K13O43283 966 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 CST8O60676 142 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 SERPINB8P50452 374 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 TUBA1BP68363 451 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 EDRF1Q3B7T1 1238 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 FAM180AQ6UWF9 173 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 TUBA1AQ71U36 451 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 LINC00523Q86TU6 105 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 CELF4Q9BZC1 486 aaKnown RBP10.32□□□□□ -0.76
COL4A6-208ENST00000538570 TMEM8AQ9HCN3 771 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 CACNA2D2Q9NY47 1150 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 EIF3LQ9Y262 564 aaKnown RBP10.32□□□□□ -0.76
COL4A6-208ENST00000538570 HEATR9A2RTY3 570 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 NPM3O75607 178 aaKnown RBP10.32□□□□□ -0.76
COL4A6-208ENST00000538570 GRAP2O75791 330 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 C4BPBP20851 252 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 MZF1P28698 734 aaPredicted RBP10.32□□□□□ -0.76
COL4A6-208ENST00000538570 PTGER2P43116 358 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 NUP107P57740 925 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 SNRPFP62306 86 aaKnown RBP10.32□□□□□ -0.76
COL4A6-208ENST00000538570 SDE2Q6IQ49 451 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 ZNF280DQ6N043 979 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 TRIM65Q6PJ69 517 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 KDM7AQ6ZMT4 941 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 HS6ST3Q8IZP7 471 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 KRT78Q8N1N4 520 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 SYNE4Q8N205 404 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 HNRNPLLQ8WVV9 542 aaKnown RBP10.32□□□□□ -0.76
COL4A6-208ENST00000538570 CELF1Q92879 486 aaKnown RBP10.32□□□□□ -0.76
COL4A6-208ENST00000538570 NOL6Q9H6R4 1146 aaKnown RBP10.32□□□□□ -0.76
COL4A6-208ENST00000538570 SYNDIG1Q9H7V2 258 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 SPASTQ9UBP0 616 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 DOLKQ9UPQ8 538 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 VWA5AO00534 786 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 ATP9AO75110 1047 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 BAIAP3O94812 1187 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 IRF1P10914 325 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 RGS2P41220 211 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 SLC16A1P53985 500 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 ITIH4Q14624 930 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 R3HDM1Q15032 1099 aaKnown RBP10.32□□□□□ -0.76
COL4A6-208ENST00000538570 NDUFA5Q16718 116 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 C3orf20Q8ND61 904 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 FEZF2Q8TBJ5 459 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 SMARCAD1Q9H4L7 1026 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 SOX13Q9UN79 622 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 ZDHHC9Q9Y397 364 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 ADGRL3Q9HAR2 1447 aa10.32□□□□□ -0.76
COL4A6-208ENST00000538570 A2ML1A8K2U0 1454 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 NPEPPSP55786 919 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 FAPQ12884 760 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 GOLGA7BQ2TAP0 167 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 EFHC1Q5JVL4 640 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 C11orf74Q86VG3 221 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 TERB1Q8NA31 727 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 MYCBPAPQ8TBZ2 947 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 ZNF669Q96BR6 464 aaPredicted RBP10.31□□□□□ -0.76
COL4A6-208ENST00000538570 ILKAPQ9H0C8 392 aaPredicted RBP10.31□□□□□ -0.76
COL4A6-208ENST00000538570 METTL5Q9NRN9 209 aaKnown RBP10.31□□□□□ -0.76
COL4A6-208ENST00000538570 SNTNA6NMZ2 147 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 HLA-DRAP01903 254 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 EIF2S1P05198 315 aaKnown RBP10.31□□□□□ -0.76
COL4A6-208ENST00000538570 NCKAP1LP55160 1127 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 SLC29A2Q14542 456 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 FAM71DQ8N9W8 422 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 TFB1MQ8WVM0 346 aaKnown RBP10.31□□□□□ -0.76
COL4A6-208ENST00000538570 ITFG2Q969R8 447 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 VPS9D1Q9Y2B5 631 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 CHD1O14646 1710 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms