RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 ZC3H3Q8IXZ2 948 aaKnown RBP15.77■□□□□ 0.12
USP28-204ENST00000537642 DTWD2Q8NBA8 298 aa15.77■□□□□ 0.12
USP28-204ENST00000537642 PJA1Q8NG27 643 aa15.77■□□□□ 0.12
USP28-204ENST00000537642 TAS1R2Q8TE23 839 aa15.77■□□□□ 0.12
USP28-204ENST00000537642 IRF7Q92985 503 aa15.77■□□□□ 0.12
USP28-204ENST00000537642 SPATA17Q96L03 361 aa15.77■□□□□ 0.12
USP28-204ENST00000537642 B3GNT5Q9BYG0 378 aa15.77■□□□□ 0.12
USP28-204ENST00000537642 GTPBP4Q9BZE4 634 aaKnown RBP15.77■□□□□ 0.12
USP28-204ENST00000537642 SMG9Q9H0W8 520 aaKnown RBP15.77■□□□□ 0.12
USP28-204ENST00000537642 MMRN2Q9H8L6 949 aa15.77■□□□□ 0.12
USP28-204ENST00000537642 TRPV5Q9NQA5 729 aa15.77■□□□□ 0.12
USP28-204ENST00000537642 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.77■□□□□ 0.127e-6■■■■■ 74.5
USP28-204ENST00000537642 TMEM30AQ9NV96 361 aa15.77■□□□□ 0.12
USP28-204ENST00000537642 DLGAP2Q9P1A6 1054 aa15.77■□□□□ 0.12
USP28-204ENST00000537642 SIT1Q9Y3P8 196 aa15.77■□□□□ 0.12
USP28-204ENST00000537642 KIF26AQ9ULI4 1882 aaPredicted RBP15.76■□□□□ 0.11
USP28-204ENST00000537642 TRIM49BA6NDI0 452 aa15.76■□□□□ 0.11
USP28-204ENST00000537642 H0Y858 1186 aa15.76■□□□□ 0.11
USP28-204ENST00000537642 ARNTLO00327 626 aa15.76■□□□□ 0.11
USP28-204ENST00000537642 CLDN5O00501 218 aa15.76■□□□□ 0.11
USP28-204ENST00000537642 DPYSL4O14531 572 aa15.76■□□□□ 0.11
USP28-204ENST00000537642 ZNF263O14978 683 aa15.76■□□□□ 0.11
USP28-204ENST00000537642 LRRN2O75325 713 aa15.76■□□□□ 0.11
USP28-204ENST00000537642 EPB41P11171 864 aaKnown RBP15.76■□□□□ 0.11
USP28-204ENST00000537642 P4HA1P13674 534 aa15.76■□□□□ 0.11
USP28-204ENST00000537642 GLULP15104 373 aa15.76■□□□□ 0.11
USP28-204ENST00000537642 CD44P16070 742 aaKnown RBP15.76■□□□□ 0.11
USP28-204ENST00000537642 DDX6P26196 483 aaKnown RBP eCLIP15.76■□□□□ 0.11
USP28-204ENST00000537642 GRIK1P39086 918 aa15.76■□□□□ 0.11
USP28-204ENST00000537642 ASPAP45381 313 aa15.76■□□□□ 0.11
USP28-204ENST00000537642 TXNDC8Q6A555 127 aa15.76■□□□□ 0.11
USP28-204ENST00000537642 YAF2Q8IY57 180 aa15.76■□□□□ 0.11
USP28-204ENST00000537642 CMTM8Q8IZV2 173 aa15.76■□□□□ 0.11
USP28-204ENST00000537642 MAB21L3Q8N8X9 362 aa15.76■□□□□ 0.11
USP28-204ENST00000537642 MRPS31Q92665 395 aaKnown RBP15.76■□□□□ 0.11
USP28-204ENST00000537642 TSG101Q99816 390 aa15.76■□□□□ 0.11
USP28-204ENST00000537642 ZNF518BQ9C0D4 1074 aa15.76■□□□□ 0.11
USP28-204ENST00000537642 APOBEC3GQ9HC16 384 aaKnown RBP15.76■□□□□ 0.11
USP28-204ENST00000537642 TMEM8AQ9HCN3 771 aa15.76■□□□□ 0.11
USP28-204ENST00000537642 OBP2AQ9NY56 170 aa15.76■□□□□ 0.11
USP28-204ENST00000537642 ZMYM5Q9UJ78 669 aa15.76■□□□□ 0.11
USP28-204ENST00000537642 MTF2Q9Y483 593 aaPredicted RBP15.76■□□□□ 0.11
USP28-204ENST00000537642 F8VP50 259 aa15.75■□□□□ 0.11
USP28-204ENST00000537642 TRIM66O15016 1216 aa15.75■□□□□ 0.11
USP28-204ENST00000537642 CHADO15335 359 aa15.75■□□□□ 0.11
USP28-204ENST00000537642 BMP6P22004 513 aa15.75■□□□□ 0.11
USP28-204ENST00000537642 ANXA13P27216 316 aa15.75■□□□□ 0.11
USP28-204ENST00000537642 GTF2H1P32780 548 aa15.75■□□□□ 0.11
USP28-204ENST00000537642 USP46P62068 366 aa15.75■□□□□ 0.11
USP28-204ENST00000537642 NOP14P78316 857 aaKnown RBP15.75■□□□□ 0.11
USP28-204ENST00000537642 FKBP3Q00688 224 aaKnown RBP15.75■□□□□ 0.11
USP28-204ENST00000537642 LRRC63Q05C16 580 aa15.75■□□□□ 0.11
USP28-204ENST00000537642 UBXN2BQ14CS0 331 aa15.75■□□□□ 0.11
USP28-204ENST00000537642 MON1AQ86VX9 555 aa15.75■□□□□ 0.11
USP28-204ENST00000537642 C8orf48Q96LL4 319 aa15.75■□□□□ 0.11
USP28-204ENST00000537642 CEP295NLQ96MC4 621 aa15.75■□□□□ 0.11
USP28-204ENST00000537642 PHOX2BQ99453 314 aa15.75■□□□□ 0.11
USP28-204ENST00000537642 BCO2Q9BYV7 579 aa15.75■□□□□ 0.11
USP28-204ENST00000537642 ELOVL4Q9GZR5 314 aa15.75■□□□□ 0.11
USP28-204ENST00000537642 LTB4R2Q9NPC1 389 aa15.75■□□□□ 0.11
USP28-204ENST00000537642 FAM86C1Q9NVL1 165 aa15.75■□□□□ 0.11
USP28-204ENST00000537642 HMGXB4Q9UGU5 601 aa15.75■□□□□ 0.11
USP28-204ENST00000537642 CCL26Q9Y258 94 aa15.75■□□□□ 0.11
USP28-204ENST00000537642 CACNA1IQ9P0X4 2223 aa15.75■□□□□ 0.11
USP28-204ENST00000537642 MYH10P35580 1976 aa15.75■□□□□ 0.11
USP28-204ENST00000537642 FAM170BA6NMN3 283 aa15.74■□□□□ 0.11
USP28-204ENST00000537642 SOBPA7XYQ1 873 aa15.74■□□□□ 0.11
USP28-204ENST00000537642 SLC16A3O15427 465 aaKnown RBP15.74■□□□□ 0.11
USP28-204ENST00000537642 CCNE1P24864 410 aa15.74■□□□□ 0.11
USP28-204ENST00000537642 TARSP26639 723 aaKnown RBP15.74■□□□□ 0.11
USP28-204ENST00000537642 NDST1P52848 882 aa15.74■□□□□ 0.11
USP28-204ENST00000537642 ORC1Q13415 861 aa15.74■□□□□ 0.11
USP28-204ENST00000537642 KRT39Q6A163 491 aa15.74■□□□□ 0.11
USP28-204ENST00000537642 DENND5BQ6ZUT9 1274 aa15.74■□□□□ 0.11
USP28-204ENST00000537642 PAQR9Q6ZVX9 377 aa15.74■□□□□ 0.11
USP28-204ENST00000537642 ACOT1Q86TX2 421 aa15.74■□□□□ 0.11
USP28-204ENST00000537642 CELF5Q8N6W0 485 aaKnown RBP15.74■□□□□ 0.11
USP28-204ENST00000537642 BPIFB1Q8TDL5 484 aa15.74■□□□□ 0.11
USP28-204ENST00000537642 SEMA4DQ92854 862 aa15.74■□□□□ 0.11
USP28-204ENST00000537642 USP13Q92995 863 aaPredicted RBP15.74■□□□□ 0.11
USP28-204ENST00000537642 ZFYVE19Q96K21 471 aa15.74■□□□□ 0.11
USP28-204ENST00000537642 TNIP3Q96KP6 325 aa15.74■□□□□ 0.11
USP28-204ENST00000537642 TTLL2Q9BWV7 592 aa15.74■□□□□ 0.11
USP28-204ENST00000537642 OSBPL6Q9BZF3 934 aa15.74■□□□□ 0.11
USP28-204ENST00000537642 IMPG2Q9BZV3 1241 aa15.74■□□□□ 0.11
USP28-204ENST00000537642 IRF2BPLQ9H1B7 796 aa15.74■□□□□ 0.11
USP28-204ENST00000537642 PPP1R3GB7ZBB8 358 aa15.73■□□□□ 0.11
USP28-204ENST00000537642 PSMA7O14818 248 aa15.73■□□□□ 0.11
USP28-204ENST00000537642 AVPR1AP37288 418 aa15.73■□□□□ 0.11
USP28-204ENST00000537642 ANP32AP39687 249 aaKnown RBP15.73■□□□□ 0.11
USP28-204ENST00000537642 MXI1P50539 228 aa15.73■□□□□ 0.11
USP28-204ENST00000537642 UBE2HP62256 183 aa15.73■□□□□ 0.11
USP28-204ENST00000537642 STIM1Q13586 685 aa15.73■□□□□ 0.11
USP28-204ENST00000537642 MORC3Q14149 939 aa15.73■□□□□ 0.11
USP28-204ENST00000537642 ARHGAP29Q52LW3 1261 aa15.73■□□□□ 0.11
USP28-204ENST00000537642 ZNF852Q6ZMS4 543 aa15.73■□□□□ 0.11
USP28-204ENST00000537642 FAM35AQ86V20 835 aa15.73■□□□□ 0.11
USP28-204ENST00000537642 UNC93AQ86WB7 457 aa15.73■□□□□ 0.11
USP28-204ENST00000537642 FUKQ8N0W3 1084 aa15.73■□□□□ 0.11
USP28-204ENST00000537642 ZNF687Q8N1G0 1237 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms