RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 GPR25O00155 361 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 RDXP35241 583 aaKnown RBP13.81□□□□□ -0.2
LDLR-203ENST00000535915 SLC26A2P50443 739 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 SATB1Q01826 763 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 PTPN11Q06124 597 aaPredicted RBP13.81□□□□□ -0.2
LDLR-203ENST00000535915 MTFR1Q15390 333 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 CCDC142Q17RM4 750 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 JADE1Q6IE81 842 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 BBS12Q6ZW61 710 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 DPH6Q7L8W6 267 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 RFX6Q8HWS3 928 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 PPIL6Q8IXY8 311 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 C4orf33Q8N1A6 199 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 GBP7Q8N8V2 638 aaPredicted RBP13.81□□□□□ -0.2
LDLR-203ENST00000535915 SLC4A11Q8NBS3 891 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 HSPH1Q92598 858 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 PPP1R16BQ96T49 567 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 MMP19Q99542 508 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 ADAM33Q9BZ11 813 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 FARP1Q9Y4F1 1045 aaPredicted RBP13.81□□□□□ -0.2
LDLR-203ENST00000535915 TRIP11Q15643 1979 aa13.8□□□□□ -0.2
LDLR-203ENST00000535915 PCNTO95613 3336 aa13.8□□□□□ -0.2
LDLR-203ENST00000535915 ZSWIM8A7E2V4 1837 aa13.8□□□□□ -0.2
LDLR-203ENST00000535915 ITGBL1O95965 494 aaPredicted RBP13.8□□□□□ -0.2
LDLR-203ENST00000535915 STAG3L1P0CL83 205 aa13.8□□□□□ -0.2
LDLR-203ENST00000535915 GAD2Q05329 585 aa13.8□□□□□ -0.2
LDLR-203ENST00000535915 Q3C1V9 767 aa13.8□□□□□ -0.2
LDLR-203ENST00000535915 CGB2Q6NT52 195 aa13.8□□□□□ -0.2
LDLR-203ENST00000535915 CCDC62Q6P9F0 684 aa13.8□□□□□ -0.2
LDLR-203ENST00000535915 SULF1Q8IWU6 871 aa13.8□□□□□ -0.2
LDLR-203ENST00000535915 DCPSQ96C86 337 aaKnown RBP13.8□□□□□ -0.2
LDLR-203ENST00000535915 CLMNQ96JQ2 1002 aa13.8□□□□□ -0.2
LDLR-203ENST00000535915 KLHL14Q9P2G3 628 aa13.8□□□□□ -0.2
LDLR-203ENST00000535915 PRKAG3Q9UGI9 489 aa13.8□□□□□ -0.2
LDLR-203ENST00000535915 M0QYV0 167 aa13.8□□□□□ -0.2
LDLR-203ENST00000535915 HGSO14964 777 aaPredicted RBP13.8□□□□□ -0.2
LDLR-203ENST00000535915 MGRN1O60291 552 aa13.8□□□□□ -0.2
LDLR-203ENST00000535915 RNF8O76064 485 aa13.8□□□□□ -0.2
LDLR-203ENST00000535915 MICAL2O94851 1124 aa13.8□□□□□ -0.2
LDLR-203ENST00000535915 ASMTLO95671 621 aa13.8□□□□□ -0.2
LDLR-203ENST00000535915 IREB2P48200 963 aaKnown RBP13.8□□□□□ -0.2
LDLR-203ENST00000535915 ZNF268Q14587 947 aaPredicted RBP13.8□□□□□ -0.2
LDLR-203ENST00000535915 ANKRD22Q5VYY1 191 aa13.8□□□□□ -0.2
LDLR-203ENST00000535915 PYROXD1Q8WU10 500 aa13.8□□□□□ -0.2
LDLR-203ENST00000535915 CPT1BQ92523 772 aa13.8□□□□□ -0.2
LDLR-203ENST00000535915 TMEM176AQ96HP8 235 aa13.8□□□□□ -0.2
LDLR-203ENST00000535915 CALN1Q9BXU9 219 aa13.8□□□□□ -0.2
LDLR-203ENST00000535915 FRMD8P1Q9BZ68 369 aaPredicted RBP13.8□□□□□ -0.2
LDLR-203ENST00000535915 ELOVL4Q9GZR5 314 aa13.8□□□□□ -0.2
LDLR-203ENST00000535915 RNPEPQ9H4A4 650 aa13.8□□□□□ -0.2
LDLR-203ENST00000535915 ECT2Q9H8V3 914 aa13.8□□□□□ -0.2
LDLR-203ENST00000535915 PDGFCQ9NRA1 345 aa13.8□□□□□ -0.2
LDLR-203ENST00000535915 PRMT7Q9NVM4 692 aaPredicted RBP13.8□□□□□ -0.2
LDLR-203ENST00000535915 SENP1Q9P0U3 644 aa13.8□□□□□ -0.2
LDLR-203ENST00000535915 CFAP73A6NFT4 308 aa13.79□□□□□ -0.2
LDLR-203ENST00000535915 PRPF4O43172 522 aaKnown RBP eCLIP13.79□□□□□ -0.26e-9■■□□□ 13.2
LDLR-203ENST00000535915 CA4P22748 312 aa13.79□□□□□ -0.2
LDLR-203ENST00000535915 MIPP30301 263 aa13.79□□□□□ -0.2
LDLR-203ENST00000535915 RPL22P35268 128 aaKnown RBP13.79□□□□□ -0.2
LDLR-203ENST00000535915 PHKA2P46019 1235 aa13.79□□□□□ -0.2
LDLR-203ENST00000535915 ARL4CP56559 192 aa13.79□□□□□ -0.2
LDLR-203ENST00000535915 SPARCL1Q14515 664 aa13.79□□□□□ -0.2
LDLR-203ENST00000535915 TAF5Q15542 800 aa13.79□□□□□ -0.2
LDLR-203ENST00000535915 NLGN2Q8NFZ4 835 aa13.79□□□□□ -0.2
LDLR-203ENST00000535915 GRAMD1AQ96CP6 724 aa13.79□□□□□ -0.2
LDLR-203ENST00000535915 RMDN2Q96LZ7 410 aa13.79□□□□□ -0.2
LDLR-203ENST00000535915 IFT122Q9HBG6 1241 aa13.79□□□□□ -0.2
LDLR-203ENST00000535915 PSMC3IPQ9P2W1 217 aaPredicted RBP13.79□□□□□ -0.2
LDLR-203ENST00000535915 RBPJLQ9UBG7 517 aa13.79□□□□□ -0.2
LDLR-203ENST00000535915 SLC24A2Q9UI40 661 aa13.79□□□□□ -0.2
LDLR-203ENST00000535915 CILPO75339 1184 aa13.79□□□□□ -0.2
LDLR-203ENST00000535915 SSTR1P30872 391 aa13.79□□□□□ -0.2
LDLR-203ENST00000535915 PHBP35232 272 aa13.79□□□□□ -0.2
LDLR-203ENST00000535915 RPA3P35244 121 aaPredicted RBP13.79□□□□□ -0.2
LDLR-203ENST00000535915 GPX6P59796 221 aa13.79□□□□□ -0.2
LDLR-203ENST00000535915 NCALDP61601 193 aa13.79□□□□□ -0.2
LDLR-203ENST00000535915 DNAJC3Q13217 504 aa13.79□□□□□ -0.2
LDLR-203ENST00000535915 GALNTL6Q49A17 601 aa13.79□□□□□ -0.2
LDLR-203ENST00000535915 FNBP1LQ5T0N5 605 aa13.79□□□□□ -0.2
LDLR-203ENST00000535915 FAM102AQ5T9C2 384 aaPredicted RBP13.79□□□□□ -0.2
LDLR-203ENST00000535915 PNMA8AQ86V59 439 aaPredicted RBP13.79□□□□□ -0.2
LDLR-203ENST00000535915 UNC45BQ8IWX7 931 aa13.79□□□□□ -0.2
LDLR-203ENST00000535915 FITM2Q8N6M3 262 aa13.79□□□□□ -0.2
LDLR-203ENST00000535915 CPB2Q96IY4 423 aa13.79□□□□□ -0.2
LDLR-203ENST00000535915 HEXIM2Q96MH2 286 aaKnown RBP13.79□□□□□ -0.2
LDLR-203ENST00000535915 ADPGKQ9BRR6 497 aa13.79□□□□□ -0.2
LDLR-203ENST00000535915 RXFP1Q9HBX9 757 aa13.79□□□□□ -0.2
LDLR-203ENST00000535915 USP18Q9UMW8 372 aa13.79□□□□□ -0.2
LDLR-203ENST00000535915 SMG5Q9UPR3 1016 aaKnown RBP13.79□□□□□ -0.2
LDLR-203ENST00000535915 KAT6AQ92794 2004 aa13.79□□□□□ -0.2
LDLR-203ENST00000535915 DNAJC25-GNG10A0A024R161 153 aa13.78□□□□□ -0.2
LDLR-203ENST00000535915 A0A087WZ62 844 aa13.78□□□□□ -0.2
LDLR-203ENST00000535915 GEMIN4P57678 1058 aaKnown RBP13.78□□□□□ -0.2
LDLR-203ENST00000535915 EIF3EP60228 445 aaKnown RBP13.78□□□□□ -0.2
LDLR-203ENST00000535915 BNIP1Q12981 228 aa13.78□□□□□ -0.2
LDLR-203ENST00000535915 MTM1Q13496 603 aa13.78□□□□□ -0.2
LDLR-203ENST00000535915 TTLL4Q14679 1199 aa13.78□□□□□ -0.2
LDLR-203ENST00000535915 TAZQ16635 292 aa13.78□□□□□ -0.2
LDLR-203ENST00000535915 MSS51Q4VC12 460 aa13.78□□□□□ -0.2
LDLR-203ENST00000535915 FAM228AQ86W67 206 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms