RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-210ENST00000534172 WNT3P56703 355 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 SOX8P57073 446 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 NOMO3P69849 1222 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 POU5F1Q01860 360 aaKnown RBP4.1□□□□□ -1.75
CSMD3-210ENST00000534172 CNGA2Q16280 664 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 USP39Q53GS9 565 aaKnown RBP4.1□□□□□ -1.75
CSMD3-210ENST00000534172 KLHDC7AQ5VTJ3 777 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 FAM160B1Q5W0V3 765 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 METRNLQ641Q3 311 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 SESTD1Q86VW0 696 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 ZFPM1Q8IX07 1006 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 COLGALT2Q8IYK4 626 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 OR56A1Q8NGH5 318 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 ZNF622Q969S3 477 aaKnown RBP eCLIP4.1□□□□□ -1.75
CSMD3-210ENST00000534172 PHACTR3Q96KR7 559 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 TMEM74BQ9NUR3 256 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 FZD1Q9UP38 647 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 USP15Q9Y4E8 981 aaPredicted RBP4.1□□□□□ -1.75
CSMD3-210ENST00000534172 POLR1AO95602 1720 aaPredicted RBP4.1□□□□□ -1.75
CSMD3-210ENST00000534172 B8ZZF3 427 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 MYO1CO00159 1063 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 MATN4O95460 622 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 GPANK1O95872 356 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 PARP1P09874 1014 aaKnown RBP4.1□□□□□ -1.75
CSMD3-210ENST00000534172 HARSP12081 509 aaKnown RBP4.1□□□□□ -1.75
CSMD3-210ENST00000534172 BRAFP15056 766 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 LAG3P18627 525 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 PDIA3P30101 505 aaKnown RBP4.1□□□□□ -1.75
CSMD3-210ENST00000534172 HSPA7P48741 367 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 TAP1Q03518 808 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 RAB32Q13637 225 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 CSRP2Q16527 193 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 MPEG1Q2M385 716 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 LMBRD2Q68DH5 695 aaPredicted RBP4.1□□□□□ -1.75
CSMD3-210ENST00000534172 GGT6Q6P531 493 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 MZT2AQ6P582 158 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 CLNKQ7Z7G1 428 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 SLC17A8Q8NDX2 589 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 SLC25A43Q8WUT9 341 aaPredicted RBP4.1□□□□□ -1.75
CSMD3-210ENST00000534172 C1orf43Q9BWL3 253 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 IMPG2Q9BZV3 1241 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 CPNE7Q9UBL6 633 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 CPA4Q9UI42 421 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 MYRFQ9Y2G1 1151 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 MTO1Q9Y2Z2 717 aaKnown RBP4.1□□□□□ -1.75
CSMD3-210ENST00000534172 LRRFIP2Q9Y608 721 aaKnown RBP4.1□□□□□ -1.75
CSMD3-210ENST00000534172 VWDEQ8N2E2 1590 aa4.1□□□□□ -1.75
CSMD3-210ENST00000534172 SPATA31A3Q5VYP0 1347 aa4.09□□□□□ -1.75
CSMD3-210ENST00000534172 CHD4Q14839 1912 aa4.09□□□□□ -1.75
CSMD3-210ENST00000534172 FAM135BQ49AJ0 1406 aa4.09□□□□□ -1.75
CSMD3-210ENST00000534172 ERICH3Q5RHP9 1530 aa4.09□□□□□ -1.75
CSMD3-210ENST00000534172 CCDC195A0A1B0GUA6 201 aa4.09□□□□□ -1.75
CSMD3-210ENST00000534172 TCERG1O14776 1098 aaKnown RBP4.09□□□□□ -1.75
CSMD3-210ENST00000534172 FFAR2O15552 330 aa4.09□□□□□ -1.75
CSMD3-210ENST00000534172 ERN1O75460 977 aaKnown RBP4.09□□□□□ -1.75
CSMD3-210ENST00000534172 RHOBTB3O94955 611 aa4.09□□□□□ -1.75
CSMD3-210ENST00000534172 CFIP05156 583 aa4.09□□□□□ -1.75
CSMD3-210ENST00000534172 TNFAIP3P21580 790 aa4.09□□□□□ -1.75
CSMD3-210ENST00000534172 DDIT3P35638 169 aa4.09□□□□□ -1.75
CSMD3-210ENST00000534172 CASP2P42575 452 aa4.09□□□□□ -1.75
CSMD3-210ENST00000534172 DDX10Q13206 875 aaKnown RBP4.09□□□□□ -1.75
CSMD3-210ENST00000534172 FOXE3Q13461 319 aa4.09□□□□□ -1.75
CSMD3-210ENST00000534172 USP37Q86T82 979 aa4.09□□□□□ -1.75
CSMD3-210ENST00000534172 PPP1R3BQ86XI6 285 aa4.09□□□□□ -1.75
CSMD3-210ENST00000534172 SYT12Q8IV01 421 aa4.09□□□□□ -1.75
CSMD3-210ENST00000534172 MAPKAPK5Q8IW41 473 aa4.09□□□□□ -1.75
CSMD3-210ENST00000534172 IPCEF1Q8WWN9 437 aaPredicted RBP4.09□□□□□ -1.75
CSMD3-210ENST00000534172 MYEOVQ96EZ4 313 aa4.09□□□□□ -1.75
CSMD3-210ENST00000534172 MRGPRX1Q96LB2 322 aa4.09□□□□□ -1.75
CSMD3-210ENST00000534172 NELL2Q99435 816 aa4.09□□□□□ -1.75
CSMD3-210ENST00000534172 HEPHQ9BQS7 1158 aa4.09□□□□□ -1.75
CSMD3-210ENST00000534172 COLEC11Q9BWP8 271 aa4.09□□□□□ -1.75
CSMD3-210ENST00000534172 KRTAP3-1Q9BYR8 98 aa4.09□□□□□ -1.75
CSMD3-210ENST00000534172 TRIM54Q9BYV2 358 aa4.09□□□□□ -1.75
CSMD3-210ENST00000534172 DPH1Q9BZG8 443 aa4.09□□□□□ -1.75
CSMD3-210ENST00000534172 GALNT9Q9HCQ5 603 aa4.09□□□□□ -1.75
CSMD3-210ENST00000534172 SLAMF7Q9NQ25 335 aa4.09□□□□□ -1.75
CSMD3-210ENST00000534172 AKIP1Q9NQ31 210 aa4.09□□□□□ -1.75
CSMD3-210ENST00000534172 ZSCAN32Q9NX65 697 aa4.09□□□□□ -1.75
CSMD3-210ENST00000534172 ZNF785A8K8V0 405 aa4.09□□□□□ -1.76
CSMD3-210ENST00000534172 WNT10BO00744 389 aa4.09□□□□□ -1.76
CSMD3-210ENST00000534172 RNASEH2AO75792 299 aaKnown RBP4.09□□□□□ -1.76
CSMD3-210ENST00000534172 SBK3P0C264 359 aa4.09□□□□□ -1.76
CSMD3-210ENST00000534172 NPR1P16066 1061 aa4.09□□□□□ -1.76
CSMD3-210ENST00000534172 SUMO3P55854 103 aaPredicted RBP4.09□□□□□ -1.76
CSMD3-210ENST00000534172 GALNT1Q10472 559 aaPredicted RBP4.09□□□□□ -1.76
CSMD3-210ENST00000534172 TBX2Q13207 712 aaPredicted RBP4.09□□□□□ -1.76
CSMD3-210ENST00000534172 SLC35G1Q2M3R5 365 aa4.09□□□□□ -1.76
CSMD3-210ENST00000534172 MAATS1Q7Z4T9 603 aa4.09□□□□□ -1.76
CSMD3-210ENST00000534172 ANKRD18AQ8IVF6 992 aa4.09□□□□□ -1.76
CSMD3-210ENST00000534172 TMEM132CQ8N3T6 1108 aa4.09□□□□□ -1.76
CSMD3-210ENST00000534172 SDR16C5Q8N3Y7 309 aa4.09□□□□□ -1.76
CSMD3-210ENST00000534172 ZNF276Q8N554 614 aa4.09□□□□□ -1.76
CSMD3-210ENST00000534172 CELF5Q8N6W0 485 aaKnown RBP4.09□□□□□ -1.76
CSMD3-210ENST00000534172 NGDNQ8NEJ9 315 aaKnown RBP4.09□□□□□ -1.76
CSMD3-210ENST00000534172 HAS1Q92839 578 aa4.09□□□□□ -1.76
CSMD3-210ENST00000534172 KLHL32Q96NJ5 620 aa4.09□□□□□ -1.76
CSMD3-210ENST00000534172 ZNF518BQ9C0D4 1074 aa4.09□□□□□ -1.76
CSMD3-210ENST00000534172 SERHLQ9NQF3 203 aa4.09□□□□□ -1.76
CSMD3-210ENST00000534172 CEP72Q9P209 647 aa4.09□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms