RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 PPP6R2O75170 966 aa12.15□□□□□ -0.46
VPS28-214ENST00000531032 ATP2C2O75185 946 aa12.15□□□□□ -0.46
VPS28-214ENST00000531032 EGFP01133 1207 aa12.15□□□□□ -0.46
VPS28-214ENST00000531032 TNNC2P02585 160 aa12.15□□□□□ -0.46
VPS28-214ENST00000531032 TCF3P15923 654 aa12.15□□□□□ -0.46
VPS28-214ENST00000531032 DRD1P21728 446 aa12.15□□□□□ -0.46
VPS28-214ENST00000531032 WARSP23381 471 aaKnown RBP12.15□□□□□ -0.46
VPS28-214ENST00000531032 GJA4P35212 333 aa12.15□□□□□ -0.46
VPS28-214ENST00000531032 GALK1P51570 392 aa12.15□□□□□ -0.46
VPS28-214ENST00000531032 PSMC1P62191 440 aaKnown RBP12.15□□□□□ -0.46
VPS28-214ENST00000531032 STK38Q15208 465 aa12.15□□□□□ -0.46
VPS28-214ENST00000531032 MAPRE1Q15691 268 aaKnown RBP12.15□□□□□ -0.46
VPS28-214ENST00000531032 FBXO43Q4G163 708 aa12.15□□□□□ -0.46
VPS28-214ENST00000531032 VSTM1Q6UX27 236 aa12.15□□□□□ -0.46
VPS28-214ENST00000531032 EPM2AIP1Q7L775 607 aaPredicted RBP12.15□□□□□ -0.46
VPS28-214ENST00000531032 WDR49Q8IV35 697 aa12.15□□□□□ -0.46
VPS28-214ENST00000531032 SCN4BQ8IWT1 228 aa12.15□□□□□ -0.46
VPS28-214ENST00000531032 CPA6Q8N4T0 437 aa12.15□□□□□ -0.46
VPS28-214ENST00000531032 FSIP1Q8NA03 581 aa12.15□□□□□ -0.46
VPS28-214ENST00000531032 ATP2A3Q93084 1043 aa12.15□□□□□ -0.46
VPS28-214ENST00000531032 HPS3Q969F9 1004 aa12.15□□□□□ -0.46
VPS28-214ENST00000531032 MYLPFQ96A32 169 aa12.15□□□□□ -0.46
VPS28-214ENST00000531032 EXOC4Q96A65 974 aa12.15□□□□□ -0.46
VPS28-214ENST00000531032 LOXL4Q96JB6 756 aa12.15□□□□□ -0.46
VPS28-214ENST00000531032 SPATA17Q96L03 361 aa12.15□□□□□ -0.46
VPS28-214ENST00000531032 CYP2S1Q96SQ9 504 aa12.15□□□□□ -0.46
VPS28-214ENST00000531032 P2RY13Q9BPV8 354 aa12.15□□□□□ -0.46
VPS28-214ENST00000531032 KIAA1586Q9HCI6 787 aa12.15□□□□□ -0.46
VPS28-214ENST00000531032 FBRSL1Q9HCM7 1045 aaKnown RBP12.15□□□□□ -0.46
VPS28-214ENST00000531032 TRPC7Q9HCX4 862 aa12.15□□□□□ -0.46
VPS28-214ENST00000531032 CRTAC1Q9NQ79 661 aa12.15□□□□□ -0.46
VPS28-214ENST00000531032 DUS2Q9NX74 493 aaKnown RBP12.15□□□□□ -0.46
VPS28-214ENST00000531032 SLC8A2Q9UPR5 921 aa12.15□□□□□ -0.46
VPS28-214ENST00000531032 R3HCC1Q9Y3T6 440 aaKnown RBP12.15□□□□□ -0.46
VPS28-214ENST00000531032 EML5Q05BV3 1969 aa12.15□□□□□ -0.46
VPS28-214ENST00000531032 KIAA1549LQ6ZVL6 1849 aa12.15□□□□□ -0.46
VPS28-214ENST00000531032 MYO16Q9Y6X6 1858 aa12.14□□□□□ -0.47
VPS28-214ENST00000531032 C2orf78A6NCI8 922 aa12.14□□□□□ -0.47
VPS28-214ENST00000531032 K7ELQ4 463 aaPredicted RBP12.14□□□□□ -0.47
VPS28-214ENST00000531032 SPTLC2O15270 562 aa12.14□□□□□ -0.47
VPS28-214ENST00000531032 TGFB1I1O43294 461 aa12.14□□□□□ -0.47
VPS28-214ENST00000531032 RPP40O75818 363 aaKnown RBP12.14□□□□□ -0.47
VPS28-214ENST00000531032 AKAP3O75969 853 aa12.14□□□□□ -0.47
VPS28-214ENST00000531032 CKMP06732 381 aa12.14□□□□□ -0.47
VPS28-214ENST00000531032 PFKLP17858 780 aa12.14□□□□□ -0.47
VPS28-214ENST00000531032 LMO2P25791 158 aa12.14□□□□□ -0.47
VPS28-214ENST00000531032 RAP1GAPP47736 663 aa12.14□□□□□ -0.47
VPS28-214ENST00000531032 SNRNP35Q16560 246 aaKnown RBP12.14□□□□□ -0.47
VPS28-214ENST00000531032 EML3Q32P44 896 aa12.14□□□□□ -0.47
VPS28-214ENST00000531032 NAIF1Q69YI7 327 aaPredicted RBP12.14□□□□□ -0.47
VPS28-214ENST00000531032 CACNA2D4Q7Z3S7 1137 aa12.14□□□□□ -0.47
VPS28-214ENST00000531032 CAMKK1Q8N5S9 505 aa12.14□□□□□ -0.47
VPS28-214ENST00000531032 ARL14EPQ8N8R7 260 aaPredicted RBP12.14□□□□□ -0.47
VPS28-214ENST00000531032 ZNF507Q8TCN5 953 aa12.14□□□□□ -0.47
VPS28-214ENST00000531032 AGPAT3Q9NRZ7 376 aa12.14□□□□□ -0.47
VPS28-214ENST00000531032 MAGEC2Q9UBF1 373 aaPredicted RBP12.14□□□□□ -0.47
VPS28-214ENST00000531032 ARHGAP26Q9UNA1 814 aa12.14□□□□□ -0.47
VPS28-214ENST00000531032 WNT6Q9Y6F9 365 aa12.14□□□□□ -0.47
VPS28-214ENST00000531032 ATG2BQ96BY7 2078 aa12.14□□□□□ -0.47
VPS28-214ENST00000531032 UBE4BO95155 1302 aa12.13□□□□□ -0.47
VPS28-214ENST00000531032 GDF9O60383 454 aa12.13□□□□□ -0.47
VPS28-214ENST00000531032 EPN2O95208 641 aa12.13□□□□□ -0.47
VPS28-214ENST00000531032 YEATS4O95619 227 aa12.13□□□□□ -0.47
VPS28-214ENST00000531032 BDNFP23560 247 aa12.13□□□□□ -0.47
VPS28-214ENST00000531032 IFNAR2P48551 515 aa12.13□□□□□ -0.47
VPS28-214ENST00000531032 PXNP49023 591 aaPredicted RBP12.13□□□□□ -0.47
VPS28-214ENST00000531032 PDE6CP51160 858 aa12.13□□□□□ -0.47
VPS28-214ENST00000531032 ASIC1P78348 528 aa12.13□□□□□ -0.47
VPS28-214ENST00000531032 AMPD3Q01432 767 aa12.13□□□□□ -0.47
VPS28-214ENST00000531032 EHHADHQ08426 723 aa12.13□□□□□ -0.47
VPS28-214ENST00000531032 KCNB1Q14721 858 aa12.13□□□□□ -0.47
VPS28-214ENST00000531032 PSMD6Q15008 389 aa12.13□□□□□ -0.47
VPS28-214ENST00000531032 FAM26FQ5R3K3 315 aa12.13□□□□□ -0.47
VPS28-214ENST00000531032 SHC4Q6S5L8 630 aa12.13□□□□□ -0.47
VPS28-214ENST00000531032 DENND5BQ6ZUT9 1274 aa12.13□□□□□ -0.47
VPS28-214ENST00000531032 TRAPPC11Q7Z392 1133 aa12.13□□□□□ -0.47
VPS28-214ENST00000531032 IQUBQ8NA54 791 aa12.13□□□□□ -0.47
VPS28-214ENST00000531032 MYCBPAPQ8TBZ2 947 aa12.13□□□□□ -0.47
VPS28-214ENST00000531032 SH3RF2Q8TEC5 729 aa12.13□□□□□ -0.47
VPS28-214ENST00000531032 EZH1Q92800 747 aaPredicted RBP12.13□□□□□ -0.47
VPS28-214ENST00000531032 CD101Q93033 1021 aa12.13□□□□□ -0.47
VPS28-214ENST00000531032 DHX58Q96C10 678 aa12.13□□□□□ -0.47
VPS28-214ENST00000531032 PCED1BQ96HM7 432 aa12.13□□□□□ -0.47
VPS28-214ENST00000531032 CGRRF1Q99675 332 aa12.13□□□□□ -0.47
VPS28-214ENST00000531032 TTLL2Q9BWV7 592 aa12.13□□□□□ -0.47
VPS28-214ENST00000531032 FOXD4L1Q9NU39 408 aa12.13□□□□□ -0.47
VPS28-214ENST00000531032 TRIM66O15016 1216 aa12.12□□□□□ -0.47
VPS28-214ENST00000531032 CUTAO60888 179 aa12.12□□□□□ -0.47
VPS28-214ENST00000531032 TACC1O75410 805 aa12.12□□□□□ -0.47
VPS28-214ENST00000531032 CST3P01034 146 aaPredicted RBP12.12□□□□□ -0.47
VPS28-214ENST00000531032 ADRB1P08588 477 aa12.12□□□□□ -0.47
VPS28-214ENST00000531032 PDGFRBP09619 1106 aa12.12□□□□□ -0.47
VPS28-214ENST00000531032 FAM163BP0C2L3 166 aa12.12□□□□□ -0.47
VPS28-214ENST00000531032 ZNF806P0C7X5 589 aa12.12□□□□□ -0.47
VPS28-214ENST00000531032 CCDC192P0DO97 292 aa12.12□□□□□ -0.47
VPS28-214ENST00000531032 DLATP10515 647 aaKnown RBP12.12□□□□□ -0.47
VPS28-214ENST00000531032 HDCP19113 662 aa12.12□□□□□ -0.47
VPS28-214ENST00000531032 GRIK1P39086 918 aa12.12□□□□□ -0.47
VPS28-214ENST00000531032 LIMK1P53667 647 aa12.12□□□□□ -0.47
VPS28-214ENST00000531032 USP46P62068 366 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms