RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 BCO2Q9BYV7 579 aa11.38□□□□□ -0.59
CD44-227ENST00000528086 MFSD1Q9H3U5 465 aa11.38□□□□□ -0.59
CD44-227ENST00000528086 LTB4R2Q9NPC1 389 aa11.38□□□□□ -0.59
CD44-227ENST00000528086 CIZ1Q9ULV3 898 aaPredicted RBP11.38□□□□□ -0.59
CD44-227ENST00000528086 ZFHX2Q9C0A1 2572 aaPredicted RBP11.38□□□□□ -0.59
CD44-227ENST00000528086 MYO16Q9Y6X6 1858 aa11.38□□□□□ -0.59
CD44-227ENST00000528086 KANSL1LA0AUZ9 987 aa11.37□□□□□ -0.59
CD44-227ENST00000528086 C2orf78A6NCI8 922 aa11.37□□□□□ -0.59
CD44-227ENST00000528086 F8VP50 259 aa11.37□□□□□ -0.59
CD44-227ENST00000528086 BEST1O76090 585 aa11.37□□□□□ -0.59
CD44-227ENST00000528086 HOXC13P31276 330 aa11.37□□□□□ -0.59
CD44-227ENST00000528086 SOX9P48436 509 aa11.37□□□□□ -0.59
CD44-227ENST00000528086 AP3M2P53677 418 aa11.37□□□□□ -0.59
CD44-227ENST00000528086 PRKCQQ04759 706 aa11.37□□□□□ -0.59
CD44-227ENST00000528086 ENPEPQ07075 957 aa11.37□□□□□ -0.59
CD44-227ENST00000528086 TNK2Q07912 1038 aa11.37□□□□□ -0.59
CD44-227ENST00000528086 BIRC3Q13489 604 aa11.37□□□□□ -0.59
CD44-227ENST00000528086 TRPC3Q13507 836 aa11.37□□□□□ -0.59
CD44-227ENST00000528086 ZNF699Q32M78 642 aa11.37□□□□□ -0.59
CD44-227ENST00000528086 CBWD6Q4V339 395 aa11.37□□□□□ -0.59
CD44-227ENST00000528086 CBWD3Q5JTY5 395 aa11.37□□□□□ -0.59
CD44-227ENST00000528086 CBWD5Q5RIA9 395 aa11.37□□□□□ -0.59
CD44-227ENST00000528086 TXNDC11Q6PKC3 985 aa11.37□□□□□ -0.59
CD44-227ENST00000528086 TPRG1Q6ZUI0 275 aa11.37□□□□□ -0.59
CD44-227ENST00000528086 SPATA2LQ8IUW3 424 aaPredicted RBP11.37□□□□□ -0.59
CD44-227ENST00000528086 SCN4BQ8IWT1 228 aa11.37□□□□□ -0.59
CD44-227ENST00000528086 CMTM8Q8IZV2 173 aa11.37□□□□□ -0.59
CD44-227ENST00000528086 MAB21L3Q8N8X9 362 aa11.37□□□□□ -0.59
CD44-227ENST00000528086 C12orf29Q8N999 325 aa11.37□□□□□ -0.59
CD44-227ENST00000528086 B3GALNT2Q8NCR0 500 aa11.37□□□□□ -0.59
CD44-227ENST00000528086 FAM200AQ8TCP9 573 aa11.37□□□□□ -0.59
CD44-227ENST00000528086 SYAP1Q96A49 352 aaPredicted RBP11.37□□□□□ -0.59
CD44-227ENST00000528086 CLDN23Q96B33 292 aa11.37□□□□□ -0.59
CD44-227ENST00000528086 SPATA17Q96L03 361 aa11.37□□□□□ -0.59
CD44-227ENST00000528086 KCNK16Q96T55 309 aa11.37□□□□□ -0.59
CD44-227ENST00000528086 TTLL2Q9BWV7 592 aa11.37□□□□□ -0.59
CD44-227ENST00000528086 GPR88Q9GZN0 384 aa11.37□□□□□ -0.59
CD44-227ENST00000528086 TRPV5Q9NQA5 729 aa11.37□□□□□ -0.59
CD44-227ENST00000528086 HPS4Q9NQG7 708 aa11.37□□□□□ -0.59
CD44-227ENST00000528086 MAGEC2Q9UBF1 373 aaPredicted RBP11.37□□□□□ -0.59
CD44-227ENST00000528086 MAGED2Q9UNF1 606 aaPredicted RBP11.37□□□□□ -0.59
CD44-227ENST00000528086 RIF1Q5UIP0 2472 aaKnown RBP11.36□□□□□ -0.59
CD44-227ENST00000528086 TNFRSF10BO14763 440 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 PHACTR2O75167 634 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 CSH1P0DML2 217 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 CSH2P0DML3 217 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 CDC25CP30307 473 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 PSMC2P35998 433 aaKnown RBP11.36□□□□□ -0.59
CD44-227ENST00000528086 NDST1P52848 882 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 NUBP1P53384 320 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 PTPN5P54829 565 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 RPL10AP62906 217 aaKnown RBP11.36□□□□□ -0.59
CD44-227ENST00000528086 TNNC1P63316 161 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 INCA1Q0VD86 236 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 MORC3Q14149 939 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 GAS6Q14393 721 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 VEPH1Q14D04 833 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 ZNF667Q5HYK9 610 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 NAIF1Q69YI7 327 aaPredicted RBP11.36□□□□□ -0.59
CD44-227ENST00000528086 TTI2Q6NXR4 508 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 VSTM1Q6UX27 236 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 ACOT1Q86TX2 421 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 ALYREFQ86V81 257 aaKnown RBP11.36□□□□□ -0.59
CD44-227ENST00000528086 MON1AQ86VX9 555 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 CRYBG2Q8N1P7 616 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 DEPDC1BQ8WUY9 529 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 DNASE1L2Q92874 299 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 TATDN2Q93075 761 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 SMOQ99835 787 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 ARID3AQ99856 593 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 FAM83CQ9BQN1 747 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 ELOVL4Q9GZR5 314 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 RNF38Q9H0F5 515 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 SNX25Q9H3E2 840 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 SLITRK6Q9H5Y7 841 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 BRD9Q9H8M2 597 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 GTSE1Q9NYZ3 720 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 IL37Q9NZH6 218 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 FRMD4BQ9Y2L6 1034 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 SIT1Q9Y3P8 196 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 GPR179Q6PRD1 2367 aa11.36□□□□□ -0.59
CD44-227ENST00000528086 FAM170BA6NMN3 283 aa11.35□□□□□ -0.59
CD44-227ENST00000528086 A8MXQ7 604 aa11.35□□□□□ -0.59
CD44-227ENST00000528086 HHLA1C9JL84 531 aa11.35□□□□□ -0.59
CD44-227ENST00000528086 CHADO15335 359 aa11.35□□□□□ -0.59
CD44-227ENST00000528086 CCDC130P13994 396 aa11.35□□□□□ -0.59
CD44-227ENST00000528086 NOP14P78316 857 aaKnown RBP11.35□□□□□ -0.59
CD44-227ENST00000528086 PFKPQ01813 784 aa11.35□□□□□ -0.59
CD44-227ENST00000528086 CYP27A1Q02318 531 aa11.35□□□□□ -0.59
CD44-227ENST00000528086 ANGPT1Q15389 498 aa11.35□□□□□ -0.59
CD44-227ENST00000528086 SGSM1Q2NKQ1 1148 aa11.35□□□□□ -0.59
CD44-227ENST00000528086 TRIM68Q6AZZ1 485 aa11.35□□□□□ -0.59
CD44-227ENST00000528086 C4orf50Q6ZRC1 276 aa11.35□□□□□ -0.59
CD44-227ENST00000528086 INTS8Q75QN2 995 aaKnown RBP11.35□□□□□ -0.59
CD44-227ENST00000528086 FAM35AQ86V20 835 aa11.35□□□□□ -0.59
CD44-227ENST00000528086 SCAMP5Q8TAC9 235 aa11.35□□□□□ -0.59
CD44-227ENST00000528086 TTC8Q8TAM2 541 aa11.35□□□□□ -0.59
CD44-227ENST00000528086 SMARCE1Q969G3 411 aa11.35□□□□□ -0.59
CD44-227ENST00000528086 SLC35C1Q96A29 364 aa11.35□□□□□ -0.59
CD44-227ENST00000528086 C8orf48Q96LL4 319 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms