RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 APEX2Q9UBZ4 518 aa15.15■□□□□ 0.02
NUP54-216ENST00000514901 PCDHB4Q9Y5E5 795 aa15.15■□□□□ 0.02
NUP54-216ENST00000514901 CLDN5O00501 218 aa15.14■□□□□ 0.01
NUP54-216ENST00000514901 ACO1P21399 889 aaKnown RBP15.14■□□□□ 0.01
NUP54-216ENST00000514901 GBP2P32456 591 aaPredicted RBP15.14■□□□□ 0.01
NUP54-216ENST00000514901 SSTR3P32745 418 aaPredicted RBP15.14■□□□□ 0.01
NUP54-216ENST00000514901 NTHL1P78549 312 aa15.14■□□□□ 0.01
NUP54-216ENST00000514901 ORC1Q13415 861 aa15.14■□□□□ 0.01
NUP54-216ENST00000514901 PRSS36Q5K4E3 855 aa15.14■□□□□ 0.01
NUP54-216ENST00000514901 ARHGAP17Q68EM7 881 aa15.14■□□□□ 0.01
NUP54-216ENST00000514901 TMEM270Q6UE05 265 aa15.14■□□□□ 0.01
NUP54-216ENST00000514901 PAQR9Q6ZVX9 377 aa15.14■□□□□ 0.01
NUP54-216ENST00000514901 FAM35AQ86V20 835 aa15.14■□□□□ 0.01
NUP54-216ENST00000514901 ARHGEF19Q8IW93 802 aa15.14■□□□□ 0.01
NUP54-216ENST00000514901 C12orf29Q8N999 325 aa15.14■□□□□ 0.01
NUP54-216ENST00000514901 SLC2A14Q8TDB8 520 aa15.14■□□□□ 0.01
NUP54-216ENST00000514901 MYRFLQ96LU7 910 aa15.14■□□□□ 0.01
NUP54-216ENST00000514901 LRRC3Q9BY71 257 aa15.14■□□□□ 0.01
NUP54-216ENST00000514901 GPR88Q9GZN0 384 aa15.14■□□□□ 0.01
NUP54-216ENST00000514901 CBX8Q9HC52 389 aa15.14■□□□□ 0.01
NUP54-216ENST00000514901 GDE1Q9NZC3 331 aa15.14■□□□□ 0.01
NUP54-216ENST00000514901 EPS15L1Q9UBC2 864 aa15.14■□□□□ 0.01
NUP54-216ENST00000514901 ZMYM5Q9UJ78 669 aa15.14■□□□□ 0.01
NUP54-216ENST00000514901 CDH7Q9ULB5 785 aa15.14■□□□□ 0.01
NUP54-216ENST00000514901 CNTN6Q9UQ52 1028 aa15.14■□□□□ 0.01
NUP54-216ENST00000514901 NOTCH4Q99466 2003 aa15.14■□□□□ 0.01
NUP54-216ENST00000514901 SLC38A8A6NNN8 435 aa15.13■□□□□ 0.01
NUP54-216ENST00000514901 LGALS16A8MUM7 142 aa15.13■□□□□ 0.01
NUP54-216ENST00000514901 C2CD4DB7Z1M9 353 aa15.13■□□□□ 0.01
NUP54-216ENST00000514901 F8VP50 259 aa15.13■□□□□ 0.01
NUP54-216ENST00000514901 GOLGA6L19H0YKK7 550 aa15.13■□□□□ 0.01
NUP54-216ENST00000514901 AP1G2O75843 785 aa15.13■□□□□ 0.01
NUP54-216ENST00000514901 NOL4O94818 638 aa15.13■□□□□ 0.01
NUP54-216ENST00000514901 FAM200BP0CF97 657 aa15.13■□□□□ 0.01
NUP54-216ENST00000514901 VDRP11473 427 aa15.13■□□□□ 0.01
NUP54-216ENST00000514901 MYL4P12829 197 aa15.13■□□□□ 0.01
NUP54-216ENST00000514901 VCANP13611 3396 aa15.13■□□□□ 0.01
NUP54-216ENST00000514901 CCDC130P13994 396 aa15.13■□□□□ 0.01
NUP54-216ENST00000514901 RFX1P22670 979 aa15.13■□□□□ 0.01
NUP54-216ENST00000514901 CDC25CP30307 473 aa15.13■□□□□ 0.01
NUP54-216ENST00000514901 GPR15P49685 360 aa15.13■□□□□ 0.01
NUP54-216ENST00000514901 LRSAM1Q6UWE0 723 aa15.13■□□□□ 0.01
NUP54-216ENST00000514901 DENND5BQ6ZUT9 1274 aa15.13■□□□□ 0.01
NUP54-216ENST00000514901 GET4Q7L5D6 327 aaPredicted RBP15.13■□□□□ 0.01
NUP54-216ENST00000514901 TMC8Q8IU68 726 aa15.13■□□□□ 0.01
NUP54-216ENST00000514901 HS6ST3Q8IZP7 471 aa15.13■□□□□ 0.01
NUP54-216ENST00000514901 ITFG1Q8TB96 612 aa15.13■□□□□ 0.01
NUP54-216ENST00000514901 KAT5Q92993 513 aa15.13■□□□□ 0.01
NUP54-216ENST00000514901 NXPE3Q969Y0 559 aa15.13■□□□□ 0.01
NUP54-216ENST00000514901 TRMT2BQ96GJ1 504 aaKnown RBP15.13■□□□□ 0.01
NUP54-216ENST00000514901 KREMEN1Q96MU8 473 aa15.13■□□□□ 0.01
NUP54-216ENST00000514901 GCNAQ96QF7 691 aa15.13■□□□□ 0.01
NUP54-216ENST00000514901 CSNK1G1Q9HCP0 422 aa15.13■□□□□ 0.01
NUP54-216ENST00000514901 DMAP1Q9NPF5 467 aaPredicted RBP15.13■□□□□ 0.01
NUP54-216ENST00000514901 PLCB1Q9NQ66 1216 aa15.13■□□□□ 0.01
NUP54-216ENST00000514901 FAM49BQ9NUQ9 324 aa15.13■□□□□ 0.01
NUP54-216ENST00000514901 COMMD8Q9NX08 183 aa15.13■□□□□ 0.01
NUP54-216ENST00000514901 DAAM1Q9Y4D1 1078 aa15.13■□□□□ 0.01
NUP54-216ENST00000514901 PTPRDP23468 1912 aa15.13■□□□□ 0.01
NUP54-216ENST00000514901 DOCK8Q8NF50 2099 aa15.12■□□□□ 0.01
NUP54-216ENST00000514901 MYO10Q9HD67 2058 aa15.12■□□□□ 0.01
NUP54-216ENST00000514901 BDP1A6H8Y1 2624 aa15.12■□□□□ 0.01
NUP54-216ENST00000514901 SOBPA7XYQ1 873 aa15.12■□□□□ 0.01
NUP54-216ENST00000514901 RTN3O95197 1032 aaPredicted RBP15.12■□□□□ 0.01
NUP54-216ENST00000514901 LAMP2P13473 410 aa15.12■□□□□ 0.01
NUP54-216ENST00000514901 HMGA1P17096 107 aaKnown RBP15.12■□□□□ 0.01
NUP54-216ENST00000514901 SLC8A3P57103 927 aa15.12■□□□□ 0.01
NUP54-216ENST00000514901 KCNMA1Q12791 1236 aa15.12■□□□□ 0.01
NUP54-216ENST00000514901 STILQ15468 1287 aa15.12■□□□□ 0.01
NUP54-216ENST00000514901 SLC5A9Q2M3M2 681 aa15.12■□□□□ 0.01
NUP54-216ENST00000514901 FILIP1LQ4L180 1135 aa15.12■□□□□ 0.01
NUP54-216ENST00000514901 SGO2Q562F6 1265 aa15.12■□□□□ 0.01
NUP54-216ENST00000514901 PPP1R26Q5T8A7 1209 aaPredicted RBP15.12■□□□□ 0.01
NUP54-216ENST00000514901 KLHDC7AQ5VTJ3 777 aa15.12■□□□□ 0.01
NUP54-216ENST00000514901 SDHAF4Q5VUM1 108 aa15.12■□□□□ 0.01
NUP54-216ENST00000514901 NUP93Q8N1F7 819 aa15.12■□□□□ 0.01
NUP54-216ENST00000514901 GPR152Q8TDT2 470 aa15.12■□□□□ 0.01
NUP54-216ENST00000514901 FGF13Q92913 245 aa15.12■□□□□ 0.01
NUP54-216ENST00000514901 MYADMQ96S97 322 aa15.12■□□□□ 0.01
NUP54-216ENST00000514901 DUSP16Q9BY84 665 aa15.12■□□□□ 0.01
NUP54-216ENST00000514901 UBXN6Q9BZV1 441 aa15.12■□□□□ 0.01
NUP54-216ENST00000514901 TSPY26PQ9H489 355 aa15.12■□□□□ 0.01
NUP54-216ENST00000514901 KRT82Q9NSB4 513 aa15.12■□□□□ 0.01
NUP54-216ENST00000514901 MYH10P35580 1976 aa15.11■□□□□ 0.01
NUP54-216ENST00000514901 ATP1A3P13637 1013 aa15.11■□□□□ 0.01
NUP54-216ENST00000514901 KRT5P13647 590 aa15.11■□□□□ 0.01
NUP54-216ENST00000514901 CD19P15391 556 aa15.11■□□□□ 0.01
NUP54-216ENST00000514901 NPR3P17342 541 aa15.11■□□□□ 0.01
NUP54-216ENST00000514901 DDX6P26196 483 aaKnown RBP eCLIP15.11■□□□□ 0.01
NUP54-216ENST00000514901 GABRR2P28476 465 aa15.11■□□□□ 0.01
NUP54-216ENST00000514901 ADORA2BP29275 332 aa15.11■□□□□ 0.01
NUP54-216ENST00000514901 PPP3CCP48454 512 aa15.11■□□□□ 0.01
NUP54-216ENST00000514901 ZNF132P52740 706 aa15.11■□□□□ 0.01
NUP54-216ENST00000514901 UBXN1Q04323 297 aa15.11■□□□□ 0.01
NUP54-216ENST00000514901 ARHGAP15Q53QZ3 475 aa15.11■□□□□ 0.01
NUP54-216ENST00000514901 APTXQ7Z2E3 356 aaKnown RBP15.11■□□□□ 0.01
NUP54-216ENST00000514901 LUZP1Q86V48 1076 aa15.11■□□□□ 0.01
NUP54-216ENST00000514901 ANKRD52Q8NB46 1076 aa15.11■□□□□ 0.01
NUP54-216ENST00000514901 RBBP8NLQ8NC74 664 aaPredicted RBP15.11■□□□□ 0.01
NUP54-216ENST00000514901 TCEAL4Q96EI5 215 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms